Mohsen Zakeri

发表

On the Distribution of Lexical Features at Multiple Levels of Analysis

Fatemeh Almodaresi, Lyle H. Ungar, H. Andrew Schwartz, 2017, ACL.

Employees’ relationship management: Realizing competitive advantage through Information Technology

Mohsen Zakeri, Iran Abazari, 2013 .

Accounting for fragments of unexpected origin improves transcript quantification in RNA-seq simulations focused on increased realism

Mohsen Zakeri, C. Soneson, Carl Kingsford, 2021, bioRxiv.

Alignment and mapping methodology influence transcript abundance estimation

Fatemeh Almodaresi, Mohsen Zakeri, M. Love, 2020, Genome biology.

Detecting isoform-level allelic imbalance accounting for inferential uncertainty

Mohsen Zakeri, M. Love, C. Ackert-Bicknell, 2022, bioRxiv.

Alignment and mapping methodology influence transcript abundance estimation

Fatemeh Almodaresi, Charlotte Soneson, Carl Kingsford, 2019, Genome Biology.

AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite

Fatemeh Almodaresi, Mohsen Zakeri, A. Hatzigeorgiou, 2022, Genome Biology.

Alevin-fry unlocks rapid, accurate, and memory-frugal quantification of single-cell RNA-seq data

Mohsen Zakeri, C. Soneson, Robert Patro, 2021, Nature Methods.

PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index

Fatemeh Almodaresi, Mohsen Zakeri, Robert Patro, 2021, Bioinform..

Puffaligner: An Efficient and Accurate Aligner Based on the Pufferfish Index

Fatemeh Almodaresi, Rob Patro, Mohsen Zakeri, 2020 .

Sigmoni: classification of nanopore signal with a compressed pangenome index

B. Langmead, Mohsen Zakeri, S. Kovaka, 2023, bioRxiv.

Towards selective-alignment: Bridging the accuracy gap between alignment-based and alignment-free transcript quantification

Robert Patro, Hirak Sarkar, Laraib Malik, 2017, bioRxiv.

Towards Selective-Alignment: Producing Accurate And Sensitive Alignments Using Quasi-Mapping

Hirak Sarkar, Laraib Malik, Rob Patro, 2017 .

Improved data-driven likelihood factorizations for transcript abundance estimation

Fatemeh Almodaresi, Robert Patro, Avi Srivastava, 2017, Bioinform..

Sigmoni: classification of nanopore signal with a compressed pangenome index

Mohsen Zakeri, S. Kovaka, Omar Y. Ahmed, 2023, bioRxiv.

SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty

Mohsen Zakeri, M. Love, C. Ackert-Bicknell, 2023, Genome Biology.