C. Reidys

发表

Generic properties of combinatory maps: neutral networks of RNA secondary structures.

P. Schuster, P. Stadler, C. Reidys, 1997, Bulletin of mathematical biology.

Analysis of RNA sequence structure maps by exhaustive enumeration II. Structures of neutral networks and shape space covering

P. Schuster, P. Stadler, I. Hofacker, 1996 .

Analysis of RNA sequence structure maps by exhaustive enumeration I. Neutral networks

P. Schuster, P. Stadler, I. Hofacker, 1995 .

Distance-2-Matchings of Random Graphs

C. Reidys, 2004 .

An Introduction to Sequential Dynamical Systems

Christian M. Reidys, Henning S. Mortveit, C. Reidys, 2007, Universitext.

RNA pseudoknot structures with arclength ≥ 3 and stack-length ≥ σ

C. Reidys, E. Y. Jin, 2019 .

Multiplicity of phenotypes and RNA evolution.

Christian Reidys, Reza Rezazadegan, C. Reidys, 2018, Journal of theoretical biology.

Topological classification and enumeration of RNA structures by genus

R. C. Penner, C. M. Reidys, M. Waterman, 2013, Journal of mathematical biology.

Random k-noncrossing RNA structures

Christian M. Reidys, Hillary S. W. Han, William Y. C. Chen, 2009, Proceedings of the National Academy of Sciences.

Local Connectivity of Neutral Networks

Christian M Reidys, C. Reidys, 2009, Bulletin of mathematical biology.

Neutral networks of sequence to shape maps.

C. Reidys, E. Y. Jin, Jing Qin, 2007, Journal of theoretical biology.

Asymptotic Enumeration of RNA Structures with Pseudoknots

Christian M. Reidys, Emma Y. Jin, C. Reidys, 2007, Bulletin of mathematical biology.

Combinatorics of RNA Structures with Pseudoknots

Christian M. Reidys, Emma Y. Jin, C. Reidys, 2007, Bulletin of mathematical biology.

A COMBINATORIAL FRAMEWORK FOR RNA TERTIARY INTERACTION

Christian M. Reidys, C. Reidys, Jing Qin, 2007, 0710.3523.

Random Induced Subgraphs of Generalizedn-Cubes

Christian M. Reidys, C. Reidys, 1997 .

Garden-of-Eden states and fixed points of monotone dynamical systems

Ricky X. F. Chen, C. Reidys, H. Mortveit, 2018, 1805.03163.

Linear sequential dynamical systems, incidence algebras, and Möbius functions

Christian M. Reidys, Ricky X. F. Chen, C. Reidys, 2018, Linear Algebra and its Applications.

ON k-NONCROSSING PARTITIONS

C. Reidys, E. Y. Jin, Jing Qin, 2007, 0710.5014.

Dynamics of small autocatalytic reaction network IV : Inhomogeneous replicator equations

P. Schuster, P. Stadler, I. Hofacker, 2016 .

C O ] 1 0 N ov 2 01 4 Narayana polynomial and some generalizations

Christian M. Reidys, Ricky X. F. Chen, C. Reidys, 2014 .

$k$-noncrossing RNA structures with arc-length $\ge 3$

C. Reidys, E. Y. Jin, 2007, 0711.2346.

Genetic robustness of let-7 miRNA sequence–structure pairs

Fenix W. D. Huang, C. Barrett, C. Reidys, 2018, RNA.

Replication and mutation on neutral networks

C V Forst, P. Schuster, C. Reidys, 2001, Bulletin of mathematical biology.

Exploration of Artificial Landscapes - Based on Random Graphs

P. Schuster, C. Reidys, S. Kopp, 1996 .

On RNA-RNA interaction structures of fixed topological genus.

Hillary S. W. Han, C. Reidys, B. Fu, 2013, Mathematical biosciences.

Topological recursion for chord diagrams, RNA complexes, and cells in moduli spaces

C. Reidys, R. Penner, J. Andersen, 2012, 1205.0658.

The Rainbow Spectrum of RNA Secondary Structures

Thomas J. X. Li, Christian M. Reidys, C. Reidys, 2018, Bulletin of Mathematical Biology.

On Weighted Simplicial Homology

Thomas J. X. Li, C. Reidys, 2022, 2205.03435.

Michael Waterman's Contributions to Computational Biology and Bioinformatics

P. Pevzner, Fengzhu Sun, C. Reidys, 2022, J. Comput. Biol..

Buying time: detecting Vocs in SARS-CoV-2 via co-evolutionary signals

Thomas J. X. Li, Fenix W. D. Huang, Andrei C. Bura, 2022, bioRxiv.

Narayana polynomials and some generalizations

Ricky X. F. Chen, C. Reidys, 2014, 1411.2530.

Sequence-structure relations of biopolymers.

C. Barrett, C. Reidys, F. Huang, 2017, Bioinformatics.

On RNA-RNA interaction structures of xed

Hillary S. W. Han, C. Reidys, B. Fu, 2014 .

Combinatorics of RNA–RNA interaction

Thomas J. X. Li, C. Reidys, 2010, Journal of mathematical biology.

Combinatorial analysis of interacting RNA molecules.

Thomas J. X. Li, C. Reidys, 2010, Mathematical biosciences.

Syddansk Universitet Combinatorics of RNA-RNA interaction

Thomas J. X. Li, C. Reidys, 2011 .

Loop homology of bi-secondary structures II

Andrei C. Bura, C. Reidys, Qijun He, 2019, Journal of Algebraic Combinatorics.

Statistics of topological RNA structures

Thomas J. X. Li, C. Reidys, 2016, Journal of mathematical biology.

A computational framework for weighted simplicial homology

Thomas J. X. Li, Andrei C. Bura, C. Reidys, 2022, ArXiv.

The arithmetic topology of genetic alignments

Andrei C. Bura, C. Reidys, Qijun He, 2022, Journal of Mathematical Biology.

A combinatorial interpretation of the $\kappa^{\star}_{g}(n)$ coefficients

Thomas J. X. Li, C. Reidys, 2014, 1406.3162.

Rapid threat detection in SARS-CoV-2

C. Reidys, T. Li, F. Huang, 2022, medRxiv.

On 2-regular $k$-noncrossing partitions

C. Reidys, E. Y. Jin, Jing Qin, 2007 .

The topological filtration of γ-structures.

Thomas J. X. Li, C. Reidys, 2012, Mathematical biosciences.

The topological filtration of $\gamma$-structures

Thomas J. X. Li, C. Reidys, 2012 .

D ec 2 01 5 Narayana polynomials and some generalizations

Ricky X. F. Chen, C. Reidys, 2017 .

Random $k$-noncrossing partitions

C. Reidys, Jing Qin, 2009, 0911.2960.

From unicellular fatgraphs to trees

Thomas J. X. Li, C. Reidys, 2018, 1806.03319.

Linear chord diagrams on two intervals

C. Reidys, R. Penner, J. Andersen, 2010, 1010.5857.

Statistics of topological RNA structures

Thomas J. X. Li, C. Reidys, 2016, Journal of Mathematical Biology.

The Rainbow Spectrum of RNA Secondary Structures

Thomas J. X. Li, C. Reidys, 2018, Bulletin of Mathematical Biology.

Neutral Networks of RNA Secondary Structures

Christian M. Reidys, C. Reidys, 1995 .

MOTIFS IN SARS-COV-2 EVOLUTION

Thomas J. X. Li, Andrei C. Bura, C. Reidys, 2023, bioRxiv.

A Boltzmann Sampler for 1-Pairs with Double Filtration

Qijun He, Christopher Barrett, Fenix W Huang, 2019, J. Comput. Biol..

The energy-spectrum of bicompatible sequences

Christian M. Reidys, Christopher L. Barrett, Fenix W. D. Huang, 2019, Algorithms Mol. Biol..

An Efficient Dual Sampling Algorithm with Hamming Distance Filtration

Qijun He, Christopher Barrett, Fenix W Huang, 2017, J. Comput. Biol..

RNA-RNA interaction prediction based on multiple sequence alignments

Christian M. Reidys, Manja Marz, Jing Qin, 2010, Bioinform..

Target prediction and a statistical sampling algorithm for RNA–RNA interaction

Christian M. Reidys, Peter F. Stadler, Fenix W. D. Huang, 2009, Bioinform..

Combinatorial Landscapes

Christian M. Reidys, Peter F. Stadler, P. Stadler, 2002, SIAM Rev..

Topology of RNA-RNA Interaction Structures

Christian M. Reidys, Fenix W. D. Huang, Robert C. Penner, 2011, J. Comput. Biol..

Partition function and base pairing probabilities for RNA-RNA interaction prediction

Christian M. Reidys, Peter F. Stadler, Fenix W. D. Huang, 2009, Bioinform..

Addendum: topology and prediction of RNA pseudoknots

Christian M. Reidys, Peter F. Stadler, Markus E. Nebel, 2012, Bioinform..

Topology and prediction of RNA pseudoknots

Christian M. Reidys, Peter F. Stadler, Markus E. Nebel, 2011, Bioinform..

Evolutionary Dynamics and Optimization: Neutral Networks as Model-Landscapes for RNA Secondary-Structure Folding-Landscapes

Christian M. Reidys, Christian V. Forst, Jacqueline Weber, 1995, ECAL.

Sequence-structure relations of pseudoknot RNA

Christian M. Reidys, Fenix W. D. Huang, Linda Y. M. Li, 2009, BMC Bioinformatics.

Neutrality in fitness landscapes

Christian M. Reidys, Peter F. Stadler, P. Stadler, 2001, Appl. Math. Comput..

Inverse folding of RNA pseudoknot structures

Christian M. Reidys, Linda Y. M. Li, James Z. M. Gao, 2009, Algorithms for Molecular Biology.

Bio-molecular Shapes and Algebraic Structures

Christian M. Reidys, Peter F. Stadler, P. Stadler, 1996, Comput. Chem..

Central and local limit theorems for RNA structures.

Christian M Reidys, C. Reidys, E. Y. Jin, 2007, Journal of theoretical biology.

The evolution of the random reversal graph

Christian M. Reidys, Emma Yu Jin, C. Reidys, 2010, Appl. Math. Comput..

Simulations in Decision Making for Socio-technical Systems

Christian M. Reidys, Roland Thord, Christopher L. Barrett, 1998 .

RNA Secondary Structures Having a Compatible Sequence of Certain Nucleotide Ratios

Thomas J. X. Li, Christian M. Reidys, Christopher L. Barrett, 2016, J. Comput. Biol..

On a lower bound for sorting signed permutations by reversals

Christian M. Reidys, Ricky X. F. Chen, Andrei C. Bura, 2016, 1602.00778.

Enumeration of linear chord diagrams

R. C. Penner, C. M. Reidys, M. Waterman, 2010, 1010.5614.

RNA pseudoknot structures with arc-length >=3 and stack-length >=sigma

Christian M. Reidys, Emma Yu Jin, C. Reidys, 2010, Discret. Appl. Math..

Combinatorial design of pseudoknot RNA

Christian M. Reidys, Emma Y. Jin, C. Reidys, 2009, Adv. Appl. Math..

Large components in random induced subgraphs of n-cubes

Christian M. Reidys, C. Reidys, 2007, Discret. Math..

RNA-LEGO: Combinatorial Design of Pseudoknot RNA

Christian M. Reidys, Emma Y. Jin, C. Reidys, 2007, 0711.1405.

Insights into evolution of RNA-structures

Stephan Kopp, Peter Schuster, Christian Reidys, 1996, Origins of life and evolution of the biosphere.

EVOLUTION AND MUTATION RATES OF SEQUENTIAL DYNAMICAL SYSTEMS

Christian M. Reidys, Henning S. Mortveit, C. Reidys, 2004 .

Neutral networks: a combinatorial perspective

Christian M. Reidys, Stephan Kopp, C. Reidys, 1999, Adv. Complex Syst..

Elements of a theory of computer simulation I: Sequential CA over random graphs

Christian M. Reidys, Christopher L. Barrett, C. Barrett, 1999, Appl. Math. Comput..

Mutation and molecules towards mutation-based computation

C. L. Barrett, C. M. Reidys, C. Barrett, 1997 .

Evolution of random catalytic networks

S. M. Fraser, Christian M. Reidys, C. Reidys, 1997 .

Evolutionary dynamics on random structures

C. M. Reidys, C. Reidys, S. Fraser, 1997 .

Evolutionary optimization of biopolymers and sequence structure maps

Christian M. Reidys, Stephan Kopp, Peter Schuster, 1996 .

Evolution on Random Structures

Christian M. Reidys, C. Reidys, S. Fraser, 1995 .

Efficient Counting and Asymptotics of k-Noncrossing Tangled Diagrams

Doron Zeilberger, Christian M. Reidys, William Y. C. Chen, 2008, Electron. J. Comb..

Crossings and Nestings in Tangled Diagrams

Christian M. Reidys, William Y. C. Chen, Jing Qin, 2007, Electron. J. Comb..

Shapes of Interacting RNA Complexes

Christian M. Reidys, Benjamin M. M. Fu, C. Reidys, 2014, J. Comput. Biol..

Uniform generation of RNA-RNA interaction structures of fixed topological genus

Hillary S. W. Han, C. Reidys, B. Fu, 2013 .

RNA Secondary Structures with Given Motif Specification: Combinatorics and Algorithms

Ricky X. F. Chen, M. Waterman, C. Reidys, 2023, Bulletin of Mathematical Biology.

Weighted Homology of Bi-Structures over Certain Discrete Valuation Rings

Christian M. Reidys, Andrei C. Bura, Qijun He, 2021, Mathematics.

Loop homology of bi-secondary structures

Christian M. Reidys, Andrei C. Bura, Qijun He, 2019, Discret. Math..

On an enhancement of RNA probing data using information theory

Thomas J. X. Li, Christian M. Reidys, C. Reidys, 2019, Algorithms for Molecular Biology.

Random induced subgraphs of Cayley graphs induced by transpositions

Christian M. Reidys, Emma Yu Jin, C. Reidys, 2009, Discret. Math..

Combinatorics of sequential dynamical systems

Christian M. Reidys, C. Reidys, 2008, Discret. Math..

The block spectrum of RNA pseudoknot structures

Thomas J. X. Li, Christian M. Reidys, Christie S. Burris, 2018, Journal of Mathematical Biology.

On Acyclic Orientations and Sequential Dynamical Systems

Christian M. Reidys, C. Reidys, 2001, Adv. Appl. Math..

Discrete, sequential dynamical systems

Christian M. Reidys, Henning S. Mortveit, C. Reidys, 2001, Discret. Math..

Sequential dynamical systems

Christian M. Reidys, Henning S. Mortveit, Chris L. Barrett, 2007, Artificial Life and Robotics.

Elements of a theory of simulation III: equivalence of SDS

Christian M. Reidys, Christopher L. Barrett, Henning S. Mortveit, 2001, Appl. Math. Comput..

Elements of a theory of simulation II: sequential dynamical systems

Christian M. Reidys, Christopher L. Barrett, Henning S. Mortveit, 2000, Appl. Math. Comput..

Science and engineering of large scale socio-technical simulations.

Madhav V. Marathe, Christian M. Reidys, Christopher L. Barrett, 2001 .

Evidence of higher order patterns in information transmission between nucleotide sequences and folded molecular shapes of RNA

Christian M. Reidys, Christopher L. Barrett, Fenix W. D. Huang, 2016, BICT.

D-Chain Tomography of Networks: A New Structure Spectrum and an Application to the SIR Process

Christian M. Reidys, Ricky X. F. Chen, Andrei C. Bura, 2018, SIAM J. Appl. Dyn. Syst..

On Topological RNA Interaction Structures

Christian M. Reidys, Jing Qin, C. Reidys, 2013, J. Comput. Biol..

Random Subgraphs of Cayley Graphs over p-Groups

Christian M. Reidys, C. Reidys, 1997, Eur. J. Comb..

Degeneracy and genetic assimilation in RNA evolution

C. Reidys, Reza Rezazadegan, 2018, BMC Bioinformatics.

Neutral Evolution and Mutation Rates of Sequential Dynamical Systems

C. Reidys, H. Mortveit, 2004, Adv. Complex Syst..

Network tomography: a new structure spectrum for studying network dynamics pdf

Christian M. Reidys, Ricky X. F. Chen, Andrei C. Bura, 2018, ArXiv.

Fatgraph models of RNA structure

Christian M. Reidys, Fenix W. D. Huang, Reza Rezazadegan, 2017 .

On the genus filtration of diagrams over two backbones

C. Reidys, B. Fu, 2013, 1311.0682.

Sequential Dynamical Systems Over Words

Christian M. Reidys, C. Reidys, 2006 .

On the Loop Homology of a Certain Complex of RNA Structures

Thomas J. X. Li, C. Reidys, 2021, Mathematics.

Topological recursion for chord diagrams, RNA complexes, and cells in moduli spaces

C. Reidys, J. Andersen, L. Chekhov, 2012, 1205.0658.

A Combinatorial Identity Concerning Plane Colored Trees and its Applications

Christian M. Reidys, Ricky X. F. Chen, C. Reidys, 2017, J. Integer Seq..

Sequence‐structure relations of biopolymers

Christian M. Reidys, Christopher L. Barrett, Fenix W. D. Huang, 2015, Bioinform..

The block spectrum of RNA pseudoknot structures

Thomas J. X. Li, Christie S. Burris, C. Reidys, 2018, Journal of Mathematical Biology.

ASYMPTOTIC ANALYSIS OF k-NONCROSSING MATCHINGS

Christian M. Reidys, Emma Y. Jin, C. Reidys, 2008, 0803.0848.

Topological language for RNA

Christian M. Reidys, Fenix W. D. Huang, C. Reidys, 2016, Mathematical biosciences.

Generation of RNA pseudoknot structures with topological genus filtration.

C. Reidys, M. Nebel, F. Huang, 2013, Mathematical biosciences.

Loops in Canonical RNA Pseudoknot Structures

C. Reidys, M. Nebel, Rita R. Wang, 2009, J. Comput. Biol..

Stacks in canonical RNA pseudoknot structures.

Hillary S. W. Han, Christian M Reidys, C. Reidys, 2008, Mathematical biosciences.