J. SantaLucia

发表

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs.

D. Turner, R. Kierzek, T. Xia, 1998, Biochemistry.

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics.

J. SantaLucia, Jr. John SantaLucia, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches.

J. SantaLucia, N. Peyret, P. Seneviratne, 1999, Biochemistry.

The thermodynamics of DNA structural motifs.

J. SantaLucia, D. Hicks, 2004, Annual review of biophysics and biomolecular structure.

Functional group substitutions as probes of hydrogen bonding between GA mismatches in RNA internal loops

D. Turner, R. Kierzek, J. SantaLucia, 1991 .

Improved nearest-neighbor parameters for predicting DNA duplex stability.

J. SantaLucia, P. Seneviratne, H. Allawi, 1996, Biochemistry.

Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects.

J. SantaLucia, H. Allawi, 1998, Biochemistry.

Thermodynamics and NMR of internal G.T mismatches in DNA.

J. SantaLucia, H. Allawi, 1997, Biochemistry.

Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics.

D. Turner, J. SantaLucia, Jr J SantaLucia, 1993, Biochemistry.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.

Katarzyna J Purzycka, K. Weeks, Zhichao Miao, 2017, RNA.

Solution structure of (rGGCAGGCC)2 by two-dimensional NMR and the iterative relaxation matrix approach.

D. Turner, J. SantaLucia, M. Wu, 1996, Biochemistry.

Measuring the thermodynamics of RNA secondary structure formation.

D. Turner, J. SantaLucia, Douglas H. Turner, 1997, Biopolymers.

Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. III. Functional analysis of the 690 loop.

J. SantaLucia, S. Morosyuk, P. Cunningham, 2001, Journal of molecular biology.

AMBER Force Field Parameters for the Naturally Occurring Modified Nucleosides in RNA.

John SantaLucia, Pirro Saro, Raviprasad Aduri, 2007, Journal of chemical theory and computation.

Hachimoji DNA and RNA: A genetic system with eight building blocks

Adam J. Meyer, Nicole A. Leal, S. Benner, 2019, Science.

Determination of RNA structure and thermodynamics.

J. A. Jaeger, I. Tinoco, J. SantaLucia, 1993, Annual review of biochemistry.

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Feng Ding, Kristian Rother, Thomas Hermann, 2012, RNA.

structure prediction : A CASP-like evaluation of RNA three-dimensional RNA-Puzzles

Christopher A. Lavender, K. Weeks, E. Westhof, 2012 .

Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA.

J. SantaLucia, H. Allawi, 1998, Biochemistry.

THE THERMODYNAMICS OF

John SantaLucia, Donald A. Hicks, J. SantaLucia, 2004 .

Thermodynamic parameters for DNA sequences with dangling ends.

J. SantaLucia, N. Peyret, J SantaLucia, 2000, Nucleic acids research.

Thermodynamics of internal C.T mismatches in DNA.

J. SantaLucia, H. Allawi, 1998, Nucleic acids research.

Thermodynamic contributions of single internal rA·dA, rC·dC, rG·dG and rU·dT mismatches in RNA/DNA duplexes

John SantaLucia, Donald A. Hicks, J. SantaLucia, 2010, Nucleic acids research.

In vivo determination of RNA structure-function relationships: analysis of the 790 loop in ribosomal RNA.

J. SantaLucia, P. Cunningham, K Lee, 1997, Journal of molecular biology.

Physical principles and visual-OMP software for optimal PCR design.

John SantaLucia, J. SantaLucia, 2007, Methods in molecular biology.

Investigation of the Yamaguchi esterification mechanism. Synthesis of a lux-s enzyme inhibitor using an improved esterification method.

J. SantaLucia, Ilirian Dhimitruka, 2006, Organic letters.

Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations

J. SantaLucia, R. Aduri, Jun Jiang, 2013, Nucleic acids research.

THE SYNTHESIS OF ANTI-FIXED 3-METHYL-3- DEAZA-2′-DEOXYADENOSINE AND OTHER 3H-IMIDAZO[4,5-c]PYRIDINE ANALOGS

J. SantaLucia, R. Irani, 2002, Nucleosides, nucleotides & nucleic acids.

Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin.

D. Turner, R. Kierzek, J. SantaLucia, 1992, Science.

The synthesis of 5-iodocytidine phosphoramidite for heavy atom derivatization of RNA

J. SantaLucia, R. Irani, 1999 .

Molecular modeling of nucleic acids

Neocles B. Leontis, John SantaLucia, J. SantaLucia, 1997 .

Effect of abrasives on flavor release from dentifrices

R. S. Robinson, J. SantaLucia, E. Tavss, 1988 .

Flavor characterization of dentifrices using kinetic headspace gas chromatography

R. S. Robinson, J. SantaLucia, S. G. Wiet, 1988 .

Analysis of flavor absorption into plastic packaging materials using multiple headspace extraction gas chromatography

R. S. Robinson, J. SantaLucia, E. Tavss, 1988 .

Synthesis and NMR of RNA with selective isotopic enrichment in the bases.

I. Tinoco, J. SantaLucia, L. X. Shen, 1995, Nucleic acids research.

Nearest-neighbor thermodynamics of deoxyinosine pairs in DNA duplexes

John SantaLucia, J. SantaLucia, Norman E. Watkins, 2005, Nucleic acids research.

Nearest-neighbor parameters for G.U mismatches: [formula; see text] is destabilizing in the contexts [formula; see text] and [formula; see text] but stabilizing in [formula; see text].

A. E. Walter, D. Turner, R. Kierzek, 1991, Biochemistry.

Effects of GA mismatches on the structure and thermodynamics of RNA internal loops.

D. Turner, R. Kierzek, J. SantaLucia, 1990, Biochemistry.

Comparison of solution conformations and stabilities of modified helix 69 rRNA analogs from bacteria and human.

J. SantaLucia, Jun Jiang, C. Chow, 2012, Biopolymers.

NMR solution structure of a DNA dodecamer containing single G.T mismatches.

J. SantaLucia, H. Allawi, J SantaLucia, 1998, Nucleic acids research.

Statistical mechanical simulation of polymeric DNA melting with MELTSIM

Kenneth A. Marx, Richard D. Blake, J. Knowles, 1999, Bioinform..

Identification and role of functionally important motifs in the 970 loop of Escherichia coli 16S ribosomal RNA.

John SantaLucia, Ashesh A Saraiya, J. SantaLucia, 2008, Journal of molecular biology.

Pseudouridines in rRNA helix 69 play a role in loop stacking interactions.

J. SantaLucia, Yu-Cheng Chang, R. Aduri, 2008, Organic & biomolecular chemistry.

Appendix Q: Recommendations for Developing Molecular Assays for Microbial Pathogen Detection Using Modern In Silico Approaches

Linda C Beck, J. SantaLucia, G. Xie, 2020, Journal of AOAC International.

Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA: analysis of the stem nucleotides.

J. SantaLucia, S. Morosyuk, P. Cunningham, 2000, Journal of molecular biology.

Binding of specific DNA base-pair mismatches by N-methylpurine-DNA glycosylase and its implication in initial damage recognition.

Lawrence J. Clos, J. SantaLucia, S. Mitra, 2002, Journal of molecular biology.

Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs.

D. Turner, R. Kierzek, J. SantaLucia, 1991, Biochemistry.

The RNA Folding Problems: Different Levels of sRNA Structure Prediction

Jun Jiang, Zheng Ouyang, Marcus Wood, 2012 .

Solution structure of RNase P RNA.

N. Pace, J. SantaLucia, J. Tainer, 2011, RNA.

Gut microbiome features are associated with sepsis onset and outcomes

J. SantaLucia, R. Woods, C. Bassis, 2021, bioRxiv.

Development and Characterization of a Highly Specific and Sensitive SYBR Green Reverse Transcriptase PCR Assay for Detection of the 2009 Pandemic H1N1 Influenza Virus on the Basis of Sequence Signatures

Yuriy Fofanov, Stephen Huff, Mark Rojas, 2010, Journal of Clinical Microbiology.

Effect of mismatched complementary strands and 5'-change in sequence context on the thermodynamics and structure of benzo[a]pyrene-modified oligonucleotides.

J. SantaLucia, L. Romano, M. Arghavani, 1998, Biochemistry.

The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches.

D. Turner, S. Holbrook, J. SantaLucia, 1997, Nucleic acids research.

Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. II. NMR solution structure.

J. SantaLucia, S. Morosyuk, P. Cunningham, 2001, Journal of molecular biology.

Measurement of Klebsiella Intestinal Colonization Density To Assess Infection Risk

J. SantaLucia, K. Kaye, Krishna Rao, 2021, bioRxiv.

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Christopher A. Lavender, K. Weeks, A. Serganov, 2012, RNA.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

Katarzyna J Purzycka, K. Weeks, Zhichao Miao, 2017, RNA.

Structures of two RNA octamers containing tandem G.A base pairs.

John SantaLucia, Stephen R Holbrook, D. Turner, 2004, Acta crystallographica. Section D, Biological crystallography.

structure prediction : A CASP-like evaluation of RNA three-dimensional RNA-Puzzles

Christopher A. Lavender, K. Weeks, A. Serganov, 2012 .