C. Pleij

发表

NMR structure of a classical pseudoknot: interplay of single- and double-stranded RNA.

C. W. Hilbers, M. Kolk, M. van der Graaf, 1998, Science.

An APL-programmed genetic algorithm for the prediction of RNA secondary structure.

C. Pleij, F. V. van Batenburg, A. Gultyaev, 1995, Journal of theoretical biology.

Prediction of RNA secondary structure, including pseudoknotting, by computer simulation.

J. Abrahams, C. Pleij, M. van den Berg, 1990, Nucleic acids research.

The computer simulation of RNA folding pathways using a genetic algorithm.

C. Pleij, F. V. van Batenburg, A. Gultyaev, 1995, Journal of molecular biology.

An approximation of loop free energy values of RNA H-pseudoknots.

C. Pleij, F. V. van Batenburg, A. Gultyaev, 1999, RNA.

The central pseudoknot in 16S ribosomal RNA is needed for ribosome stability but is not essential for 30S initiation complex formation.

C. Pleij, R. Poot, J. van Duin, 1996, Nucleic acids research.

Hydrodynamic properties of RNA: effect of multivalent cations on the sedimentation behavior of turnip yellow mosaic virus RNA

C. Pleij, H. G. Eecen, J. H. Dierendonck, 1985 .

Structure of the 3′‐hairpin of the TYMV pseudoknot: preformation in RNA folding

C. W. Hilbers, M. Kolk, M. van der Graaf, 1998, The EMBO journal.

Structural parameters affecting the kinetics of RNA hairpin formation

I. Hofacker, C. Flamm, C. Pleij, 2006, Nucleic acids research.

Self-induced structural switches in RNA.

C. Pleij, J. H. A. Nagel, 2002, Biochimie.

The influence of a metastable structure in plasmid primer RNA on antisense RNA binding kinetics.

C. Pleij, F. V. van Batenburg, A. Gultyaev, 1995, Nucleic acids research.

Dynamic competition between alternative structures in viroid RNAs simulated by an RNA folding algorithm.

C. Pleij, F. V. van Batenburg, A. Gultyaev, 1998, Journal of molecular biology.

A new principle of RNA folding based on pseudoknotting.

C. Pleij, L. Bosch, K. Rietveld, 1985, Nucleic acids research.

tRNA‐like structures

C. Pleij, L. Bosch, R. Mans, 1991 .

Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1.

C. Pleij, I. Brierley, S. Inglis, 1994, Nucleic acids research.

Kissing of the two predominant hairpin loops in the coxsackie B virus 3' untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis

C. Pleij, V. Agol, J. Galama, 1997, Journal of virology.

Mutational analysis of the pseudoknot in the tRNA-like structure of turnip yellow mosaic virus RNA. Aminoacylation efficiency and RNA pseudoknot stability.

C. Pleij, L. Bosch, R. Mans, 1992, Journal of molecular biology.

RNA Structure: Pseudoknots

E. Westhof, C. Pleij, A. Gultyaev, 2012 .

Solution structure of the pseudoknot of SRV-1 RNA, involved in ribosomal frameshifting1

C. W. Hilbers, C. Pleij, H. Heus, 2001, Journal of Molecular Biology.

Pseudoknots: A Vital Feature in Viral RNA

C. Pleij, B. Deiman, 1997 .

RNA pseudoknots: structure, detection, and prediction.

C. Pleij, L. Bosch, 1989, Methods in enzymology.

3-D graphics modelling of the tRNA-like 3'-end of turnip yellow mosaic virus RNA: structural and functional implications.

C. Pleij, C. Florentz, R. Giegé, 1987, Journal of biomolecular structure & dynamics.

C. Pleij, L. Bosch, K. Rietveld, 1987 .

Selective Pressures on RNA Hairpins In Vivo and In Vitro

C. Pleij, F. V. van Batenburg, A. Gultyaev, 2002, Journal of Molecular Evolution.

M. Van Montagu, C. Pleij, X. Danthinne, 1991, Virology.

C. Pleij, A. Gultyaev, E. van Batenburg, 1994, The Journal of general virology.

In vivo dynamics of intracistronic transcriptional polarity.

C. Pleij, J. van Duin, M. D. de Smit, 2009, Journal of molecular biology.

Functional analysis of the SRV-1 RNA frameshifting pseudoknot

C. W. Hilbers, C. Pleij, H. Heus, 2010, Nucleic acids research.

Efficient transcription obtained by a new procedure of the tRNA-like structure of turnip yellow mosaic virus by a template-dependent and specific viral RNA polymerase

C. Pleij, K. Séron, B. Deiman, 1997 .

RNA pseudoknots

C. Pleij, 1994, Current Opinion in Structural Biology.

J. Virol. Methods

C. Pleij, K. Séron, B. Deiman, 1997 .

Nonstructural alfalfa mosaic virus RNA-coded proteins present in tobacco leaf tissue.

C. Pleij, L. Bosch, A. Haenni, 1984, Virology.

New Structure Model for the Packaging Signal in the Genome of Group IIa Coronaviruses

C. Pleij, R. Olsthoorn, E. Snijder, 2007, Journal of Virology.

Elongation Factor Tu3 (EF-Tu3) from the Kirromycin Producer Streptomyces ramocissimus Is Resistant to Three Classes of EF-Tu-Specific Inhibitors

M. Bibb, G. V. van Wezel, C. Pleij, 2007, Journal of bacteriology.

Methylation of the conserved A1518-A1519 in Escherichia coli 16S ribosomal RNA by the ksgA methyltransferase is influenced by methylations around the similarly conserved U1512.G1523 base pair in the 3' terminal hairpin.

C. Pleij, J. Ofengand, P. Cunningham, 1994, Biochimie.

A pH-jump approach for investigating secondary structure refolding kinetics in RNA.

C. Pleij, A. Gultyaev, K. Gerdes, 2002, Nucleic acids research.

Protonatable hairpins are conserved in the 5'-untranslated region of tymovirus RNAs.

C. Pleij, P. Michiels, C W Pleij, 1996, Nucleic acids research.

Properties of turnip yellow mosaic virus in cesium chloride solutions: the formation of high-density components.

C. Pleij, L. Bosch, E. Jaspars, 1982, Virology.

Translational studies with turnip yellow mosaic virus RNAs isolated from major and minor virus particles.

C. Pleij, L. Bosch, A. Haenni, 1979, Virology.

Mapping sequences required for productive replication of beet necrotic yellow vein virus RNA 3.

C. Pleij, K. Richards, G. Jonard, 1990, Virology.

Three‐dimensional models of the tRNA‐like 3′ termini of some plant viral RNAs.

C. Pleij, L. Bosch, K. Rietveld, 1983, The EMBO journal.

Properties of the tobacco mosaic virus intermediate length RNA-2 and its translation.

C. Pleij, L. Bosch, A. Haenni, 1983, Virology.

Biochemical and biophysical analysis of pseudoknot-containing RNA fragments. Melting studies and NMR spectroscopy.

C. Pleij, C. Hilbers, L. Bosch, 1989, European journal of biochemistry.

tRNA-Like Structure Regulates Translation of Brome Mosaic Virus RNA

Cornelis W. A. Pleij, Catherine Florentz, C. Pleij, 2004, Journal of Virology.

Protonation of non-Watson–Crick base pairs and encapsidation of turnip yellow mosaic virus RNA

C. Pleij, H. Bink, J. van der Meulen, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Metastable structures and refolding kinetics in hok mRNA of plasmid R1.

C. Pleij, A. Gultyaev, K. Gerdes, 1999, RNA.

The 5' non-translated region of Varroa destructor virus 1 (genus Iflavirus): structure prediction and IRES activity in Lymantria dispar cells.

C. Pleij, J. Vlak, J. Ongus, 2006, The Journal of general virology.

Intracistronic transcriptional polarity enhances translational repression: a new role for Rho

C. Pleij, J. van Duin, M. D. de Smit, 2008, Molecular microbiology.

tRNA-like structures. Structure, function and evolutionary significance.

C. Pleij, L. Bosch, R. Mans, 1991, European journal of biochemistry.

Complete genome sequence of Montana Myotis leukoencephalitis virus, phylogenetic analysis and comparative study of the 3' untranslated region of flaviviruses with no known vector.

P. Lemey, C. Pleij, E. De Clercq, 2002, Journal of General Virology.

The 5′-Proximal Hairpin of Turnip Yellow Mosaic Virus RNA: Its Role in Translation and Encapsidation

C. Pleij, J. Schirawski, A. Haenni, 2003, Journal of Virology.

Analysis of the role of the pseudoknot component in the SRV-1 gag-pro ribosomal frameshift signal: loop lengths and stability of the stem regions.

C. Pleij, E. ten Dam, P. Verlaan, 1995, RNA.

Differential response to frameshift signals in eukaryotic and prokaryotic translational systems.

C. Pleij, J. van Duin, A. Garcia, 1993, Nucleic acids research.

The tRNA-like structure at the 3' terminus of turnip yellow mosaic virus RNA. Differences and similarities with canonical tRNA.

C. Pleij, L. Bosch, K. Rietveld, 1982, Nucleic acids research.

Structural motifs in the RNA encoded by the early nodulation gene enod40 of soybean.

C. Pleij, A. Gultyaev, H. Spaink, 2003, Nucleic acids research.

Crystal structure of an empty capsid of turnip yellow mosaic virus.

Jan Pieter Abrahams, Navraj S Pannu, J. Abrahams, 2004, Journal of molecular biology.

Analysis of the RNA of Potato yellow vein virus: evidence for a tripartite genome and conserved 3'-terminal structures among members of the genus Crinivirus.

C. Pleij, R. Olsthoorn, R. Coutts, 2004, The Journal of general virology.

RNA–protein interactions in spherical viruses

C. Pleij, H. Bink, 2002, Archives of Virology.

Five pseudoknots are present at the 204 nucleotides long 3' noncoding region of tobacco mosaic virus RNA.

J P Abrahams, J. Abrahams, C. Pleij, 1985, Nucleic acids research.

Functional evidence for D‐ and T‐loop interactions in tmRNA

C. Pleij, A. Gultyaev, M. D. de Smit, 2002, FEBS letters.

Base complementarity in helix 2 of the central pseudoknot in 16S rRNA is essential for ribosome functioning.

C. Pleij, R. Poot, J. van Duin, 1998, Nucleic acids research.

Translation initiation complex formation with 30 S ribosomal particles mutated at conserved positions in the 3'-minor domain of 16 S RNA.

L. Gold, C. Pleij, S. Ringquist, 1993, Journal of molecular biology.

Translation of turnip yellow mosaic virus RNA in vitro: a closed and an open coat protein cistron.

C. Pleij, L. Bosch, L. van Vloten-Doting, 1976, Proceedings of the National Academy of Sciences of the United States of America.

In-vitro translation of cucumoviral satellites III. Translational efficiencies of cucumber mosaic virus-associated RNA 5 sequence variants can be related to the predicted secondary structures of their first 55 nucleotides

C. Pleij, J. Hansen, J. Kaper, 1990, Virus Genes.

Genome properties of beet virus Q, a new furo-like virus from sugarbeet, determined from unpurified virus.

C. Pleij, U. Commandeur, R. Koenig, 1998, The Journal of general virology.

Deletions and recombinations with the RNA1 3' ends of different tobraviruses have created a multitude of tobacco rattle virus TCM-related RNA2 species in Alstroemeria and tulip.

C. Pleij, S. Winter, D. Lesemann, 2011, The Journal of general virology.

Secondary structure model of the coat protein gene of turnip yellow mosaic virus RNA: long, C-rich, single-stranded regions.

C. Pleij, A. Gultyaev, K. Hellendoorn, 1996, Virology.

Stem–loop structures can effectively substitute for an RNA pseudoknot in −1 ribosomal frameshifting

C. Pleij, R. Olsthoorn, M. Noteborn, 2011, Nucleic acids research.

Molecular characterisation of potexviruses isolated from three different genera in the family Cactaceae

C. Pleij, J. Schiemann, W. Burgermeister, 2004, Archives of Virology.

PseudoBase: a database with RNA pseudoknots

J. Ng, F. H. D. van Batenburg, Alexander P. Gultyaev, 2000, Nucleic Acids Res..

In Vitro Transcription by the Turnip Yellow Mosaic Virus RNA Polymerase: a Comparison with the Alfalfa Mosaic Virus and Brome Mosaic Virus Replicases

C. Pleij, P. Verlaan, B. Deiman, 2000, Journal of Virology.

PseudoBase: structural information on RNA pseudoknots

F. H. D. van Batenburg, Alexander P. Gultyaev, C. W. A. Pleij, 2001, Nucleic Acids Res..

Nemesia ring necrosis virus: a new tymovirus with a genomic RNA having a histidylatable tobamovirus-like 3' end.

C. Pleij, A. Gultyaev, H. Vetten, 2005, The Journal of general virology.

Molecular characterization of isolates of anagyris vein yellowing virus, plantago mottle virus and scrophularia mottle virus – comparison of various approaches for tymovirus classification

C. Pleij, H. Vetten, D. Lesemann, 2005, Archives of Virology.

Entrapping Ribosomes for Viral Translation tRNA Mimicry as a Molecular Trojan Horse

C. Pleij, S. Barends, B. Kraal, 2003, Cell.

The formation of fast-sedimenting turnip yellow mosaic virus RNA: structural rearrangement inside the capsid.

C. Pleij, H. G. Eecen, M. Mandel, 1977, Virology.

Structural variation and functional importance of a D-loop-T-loop interaction in valine-accepting tRNA-like structures of plant viral RNAs.

C. Pleij, A. Gultyaev, M. D. de Smit, 2002, Nucleic acids research.

Single molecule studies of RNA secondary structure: AFM of TYMV viral RNA

C. Pleij, G. Zuccheri, B. Samorì, 2004, Microscopy research and technique.

Pseudoknots in RNA: A Novel Folding Principle

C. Pleij, L. Bosch, K. Rietveld, 1986 .

plasmid R 1 Metastable structures and refolding kinetics in hok mRNA of

C. Pleij, A. Gultyaev, K. Gerdes, 1999 .

A functional role for the conserved protonatable hairpins in the 5' untranslated region of turnip yellow mosaic virus RNA

C. Pleij, P. Verlaan, K. Hellendoorn, 1997, Journal of virology.

Two histidines of the coat protein of turnip yellow mosaic virus at the capsid interior are crucial for viability

C. Pleij, H. Bink, Shalendra K. Roepan, 2004, Proteins.

Structure and variability of the 3′ end of RNA 3 of Beet soil-borne pomovirus– a virus with uncertain pathogenic effects

C. Pleij, R. Koenig, G. Büttner, 2000, Archives of Virology.

Molecular characterization of a new furovirus mainly infecting rye

C. Pleij, R. Koenig, W. Huth, 2014, Archives of Virology.

Pseudoknots: a new motif in the RNA game.

C. Pleij, C. W. Pleij, C. Pleij, 1990, Trends in biochemical sciences.

RNA Folding Dynamics: Computer Simulations by a Genetic Algorithm

F. H. D. van Batenburg, Alexander P. Gultyaev, Cornelis W. A. Pleij, 1997 .

Conservation of RNA structures enables TNV and BYDV 5' and 3' elements to cooperate synergistically in cap-independent translation.

Alexander P Gultyaev, Frank Meulewaeter, Marc Cornelissen, 2004, Nucleic acids research.