R. Prill

发表

Revealing strengths and weaknesses of methods for gene network inference

D. Floreano, C. Mattiussi, D. Marbach, 2010, Proceedings of the National Academy of Sciences.

Wisdom of crowds for robust gene network inference

Diogo M. Camacho, Manolis Kellis, J. Collins, 2012, Nature Methods.

Correction: Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

N. D. Clarke, P. Sorger, D. Marbach, 2010, PLoS ONE.

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

N. D. Clarke, P. Sorger, D. Marbach, 2010, PloS one.

A communal catalogue reveals Earth’s multiscale microbial diversity

Rick L. Stevens, William A. Walters, Nicole M. Gaudelli, 2017, Nature.

Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage

Nicole M. Gaudelli, David R. Liu, Jose A Navas-Molina, 2017, Nature.

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics

Noah Alexander, Joel T. Dudley, Paul Zumbo, 2015, Cell systems.

Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers

Stefano Lonardi, Gail L. Rosen, Rita R. Colwell, 2017 .

Noise-Driven Causal Inference in Biomolecular Networks

Guillermo A. Cecchi, Gustavo Stolovitzky, Grégoire Altan-Bonnet, 2015, PloS one.

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

Stefano Lonardi, Gail L. Rosen, Rita R. Colwell, 2017, Genome Biology.

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

Alexa B. R. McIntyre, C. Mason, S. Lonardi, 2019, Genome biology.

Microbiome changes through ontogeny of a tick pathogen vector

R. Prill, S. Kolokotronis, T. J. Daniels, 2016, Molecular ecology.

Monitoring the microbiome for food safety and quality using deep shotgun sequencing

David D. Chambliss, Kristen L. Beck, R. Prill, 2020, bioRxiv.

Dynamic Properties of Network Motifs Contribute to Biological Network Organization

Andre Levchenko, Pablo A Iglesias, Robert J Prill, 2005, PLoS biology.

BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters

Sandeep Tata, Hailiang Huang, Robert J. Prill, 2013, Bioinform..

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

Alexa B. R. McIntyre, C. Mason, S. Lonardi, 2017, bioRxiv.

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.

Noah Alexander, Joel T Dudley, Eric E Schadt, 2015, Cell systems.

Geospatial Resolution of H uman and Bacterial Diversity with City-Scale Metagenomics Graphical Abstract Highlights

T. Magalhães, S. Ennis, E. Schadt, 2015 .

Crowdsourcing Network Inference: The DREAM Predictive Signaling Network Challenge

Julio Saez-Rodriguez, Peter K. Sorger, Gustavo Stolovitzky, 2011, Science Signaling.

Lessons from the DREAM2 Challenges

Gustavo Stolovitzky, Andrea Califano, Robert J. Prill, 2009, Annals of the New York Academy of Sciences.

Monitoring the microbiome for food safety and quality using deep 1 shotgun sequencing 2 3 Running Title : Monitoring the microbiome for food safety and quality 4 5

David D. Chambliss, Kristen L. Beck, R. Prill, 2020 .

Food authentication from shotgun sequencing reads with an application on high protein powders

Laxmi Parida, Stefan Edlund, David D. Chambliss, 2019, npj Science of Food.

Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City

R. Prill, J. Carlton, P. Scheid, 2017, PloS one.

Engineering receptor-mediated cytotoxicity into human ribonucleases by steric blockade of inhibitor interaction

R. Prill, E. Boix, R. Youle, 1999, Nature Biotechnology.

Acute effects of the skeletal muscle-specific immunotoxin ricin-mAb 35 on extraocular muscles of rabbits.

R. Prill, R. Youle, S. Christiansen, 2000, Investigative ophthalmology & visual science.

Lessons from the DREAM 2 Challenges A Community Effort to Assess Biological Network Inference

Andrea Califano, Gustavo Stolovitzky, Robert J. Prill, 2009 .

DREAMTools: a Python package for scoring collaborative challenges

Erhan Bilal, Pablo Meyer, Raquel Norel, 2015, F1000Research.

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin

R. Norel, R. Bellazzi, R. Prill, 2016, BMC Bioinformatics.

Modern Methods for Delineating Metagenomic Complexity.

T. Magalhães, S. Ennis, E. Schadt, 2015, Cell systems.

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

Daniel Marbach, Julio Saez-Rodriguez, Peter K. Sorger, 2010, PloS one.

DREAMTools: a Python package for scoring collaborative challenges

Erhan Bilal, Pablo Meyer, Raquel Norel, 2015, F1000Research.

LSU LSU A communal catalogue reveals Earth's multiscale microbial A communal catalogue reveals Earth's multiscale microbial diversity diversity

Se Jin Song, Luke R. Thompson, James T. Morton, 2021 .

DREAMTools: a Python package for scoring collaborative challenges (version 1; referees: awaiting peer review)

Jonathan R. Karr, R. Norel, M. Weirauch, 2015 .

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin

Julio Saez-Rodriguez, Mitja Lustrek, Robert Patro, 2016, BMC Bioinformatics.