D. Tillo

发表

The DNA-encoded nucleosome organization of a eukaryotic genome

Irene K. Moore, T. Hughes, E. Segal, 2009, Nature.

A high-resolution atlas of nucleosome occupancy in yeast

Ronald W. Davis, T. Hughes, D. Tillo, 2007, Nature Genetics.

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters.

Christopher L. Warren, N. D. Clarke, T. Hughes, 2008, Molecular cell.

Sequence Determinants of In Vivo and Intrinsic Nucleosome Occupancy

D. Tillo, Desiree Tillo, 2011 .

The Epstein-Barr Virus B-ZIP Protein Zta Recognizes Specific DNA Sequences Containing 5-Methylcytosine and 5-Hydroxymethylcytosine.

Aleksey A. Porollo, M. Weirauch, D. Tillo, 2017, Biochemistry.

High Nucleosome Occupancy Is Encoded at Human Regulatory Sequences

Irene K. Moore, T. Hughes, E. Segal, 2010, PloS one.

Codep: Maximizing co‐evolutionary interdependencies to discover interacting proteins

Desiree Tillo, D. Tillo, E. Tillier, 2006, Proteins.

Custom DNA microarrays reveal diverse binding preferences of proteins and small molecules to thousands of G-quadruplexes.

D. Tillo, C. Vinson, Yaron Orenstein, 2020, ACS chemical biology.

Spatial meta-transcriptomics reveal associations of intratumor bacteria burden with lung cancer cells showing a distinct oncogenic signature

D. Tillo, D. Schrump, A. Rajan, 2022, Journal for ImmunoTherapy of Cancer.

The bZIP mutant CEBPB (V285A) has sequence specific DNA binding propensities similar to CREB1.

D. Tillo, S. Durell, C. Vinson, 2019, Biochimica et biophysica acta. Gene regulatory mechanisms.

CTCF is a Barrier for Totipotent-like Reprogramming

D. Tillo, A. Nussenzweig, E. Nora, 2020, bioRxiv.

The homeobox transcription factor DUXBL controls exit from totipotency

D. Tillo, L. Jenkins, P. Stein, 2022, bioRxiv.

The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNAsequences containing 5-methylcytosine and5-hydroxymethylcytosine

Aleksey A. Porollo, M. Weirauch, D. Tillo, 2018 .

Bacterial Lipocalins: Origin, Structure, and Function

D. Tillo, E. Tillier, C. Cambillau, 2013 .

Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein

E. Segal, D. Tillo, E. Zalckvar, 2013, Proceedings of the National Academy of Sciences.

G+C content dominates intrinsic nucleosome occupancy

Timothy R. Hughes, Desiree Tillo, T. Hughes, 2009, BMC Bioinformatics.

Nucleosomes are enriched at the boundaries of hypomethylated regions (HMRs) in mouse dermal fibroblasts and keratinocytes

D. Tillo, R. Chatterjee, Ximiao He, 2014, Epigenetics & Chromatin.

GABPα Binding to Overlapping ETS and CRE DNA Motifs Is Enhanced by CREB1: Custom DNA Microarrays

M. Weirauch, D. Tillo, Ximiao He, 2015, G3: Genes, Genomes, Genetics.

Inheritance of Cytosine Methylation

D. Tillo, C. Vinson, S. Mukherjee, 2016, Journal of cellular physiology.

CTCF is a barrier for 2C-like reprogramming

D. Tillo, Sergio Ruiz, A. Nussenzweig, 2021, Nature Communications.

Methylated Cytosines Mutate to Transcription Factor Binding Sites that Drive Tetrapod Evolution

G. J. Ray, J. Stamatoyannopoulos, D. Tillo, 2015, Genome biology and evolution.

A Knock-in Mouse Model of Thymoma with the GTF2I L424H Mutation.

G. Giaccone, O. Elemento, A. Borczuk, 2022, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

The ETS transcription factor ERF controls the exit from the naïve pluripotent state in a MAPK-dependent manner.

D. Tillo, M. Kruhlak, P. FitzGerald, 2021, Science advances.

The ETS transcription factor ERF controls the exit from the naïve pluripotent state in a MAPK-dependent manner

D. Tillo, M. Kruhlak, P. FitzGerald, 2021, bioRxiv.

ASXL1 and STAG2 are common mutations in GATA2 deficiency patients with bone marrow disease and myelodysplastic syndrome

D. Tillo, S. Holland, J. Lack, 2021, Blood advances.

bZIP dimers CREB1, ATF2, Zta, ATF3|cJun, and cFos|cJun prefer binding some double stranded DNA sequences containing 5-formylcytosine and 5-carboxylcytosine.

D. Tillo, S. Durell, C. Vinson, 2020, Biochemistry.

5-Methylcytosine (5mC) and 5-Hydroxymethylcytosine (5hmC) Enhance the DNA Binding of CREB1 to the C/EBP Half-Site Tetranucleotide GCAA.

D. Tillo, S. Durell, Ximiao He, 2016, Biochemistry.

Nucleosome sequence preferences influence in vivo nucleosome organization

Eran Segal, Yvonne Fondufe-Mittendorf, Jonathan Widom, 2010, Nature Structural &Molecular Biology.

REL Domain of NFATc2 Binding to Five Types of DNA Using Protein Binding Microarrays

D. Tillo, S. Durell, C. Vinson, 2021, ACS omega.

GABPα and CREB1 Binding to Double Nucleotide Polymorphisms of Their Consensus Motifs and Cooperative Binding to the Composite ETS ⇔ CRE Motif (ACCGGAAGTGACGTCA)

D. Tillo, C. Vinson, P. FitzGerald, 2019, ACS omega.

Altering the Double-Stranded DNA Specificity of the bZIP Domain of Zta with Site-Directed Mutagenesis at N182

Aleksey A. Porollo, D. Tillo, S. Durell, 2021, ACS Omega.

Custom G4 Microarrays Reveal Selective G-Quadruplex Recognition of Small Molecule BMVC: A Large-Scale Assessment of Ligand Binding Selectivity

D. Tillo, C. Vinson, Danzhou Yang, 2020, Molecules.

DECODING COMPLEXITY IN BIOMOLECULAR RECOGNITION OF DNA I-MOTIFS

D. Tillo, C. Vinson, Kamyar Yazdani, 2023, bioRxiv.