Yen-Yi Lin

发表

ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms

Faraz Hach, Nilgun Donmez, Colin Collins, 2014, Bioinform..

BAP1 Haploinsufficiency Predicts a Distinct Immunogenic Class of Malignant Peritoneal Mesothelioma

Robert H. Bell, Faraz Hach, S. C. Sahinalp, 2018, bioRxiv.

Computational proteogenomic identification and functional interpretation of translated fusions and micro structural variations in cancer

Faraz Hach, S. C. Sahinalp, C. Collins, 2017, bioRxiv.

MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions

A. Chinnaiyan, S. C. Sahinalp, C. Collins, 2018, bioRxiv.

TEAD4 as an Oncogene and a Mitochondrial Modulator

C. Collins, Yen-Yi Lin, H. Kung, 2022, Frontiers in Cell and Developmental Biology.

Modeling Androgen Deprivation Therapy–Induced Prostate Cancer Dormancy and Its Clinical Implications

C. Collins, M. Gleave, Yen-Yi Lin, 2022, Molecular cancer research : MCR.

Establishment and characterization of a novel treatment‐related neuroendocrine prostate cancer cell line KUCaP13

C. Collins, Yen-Yi Lin, Yuzhuo Wang, 2021, Cancer science.

Structural variation and fusion detection using targeted sequencing data from circulating cell free DNA

Faraz Hach, S. C. Sahinalp, C. Collins, 2019, Nucleic acids research.

Upregulation of Scavenger receptor B1 is required for steroidogenic and non-steroidogenic cholesterol metabolism in prostate cancer.

G. Wang, P. Nelson, C. Collins, 2019, Cancer research.

Multiomics Characterization of Potential Therapeutic Vulnerabilities in Low-grade Serous Ovarian Carcinoma

Robert H. Bell, C. Collins, S. Volik, 2020, bioRxiv.

BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma

Robert H. Bell, Faraz Hach, S. C. Sahinalp, 2019, Genome Medicine.

Novel Lignin-Capped Silver Nanoparticles against Multidrug-Resistant Bacteria.

Yen-Yi Lin, U. Häfeli, A. Gedanken, 2021, ACS applied materials & interfaces.

TEMPO-Oxidized Bacterial Cellulose Pellicle with Silver Nanoparticles for Wound Dressing.

Yen-Yi Lin, Shin-Ping Lin, Jui-Ming Liu, 2018, Biomacromolecules.

Identification of gene signature for treatment response to guide precision oncology in clear-cell renal cell carcinoma

Faraz Hach, Yen-Yi Lin, C. Kollmannsberger, 2020, Scientific Reports.

MechRNA: prediction of lncRNA mechanisms from RNA–RNA and RNA–protein interactions

Rolf Backofen, Colin Collins, Süleyman Cenk Sahinalp, 2018, bioRxiv.

Mutational Analysis of Gene Fusions Predicts Novel MHC Class I–Restricted T-Cell Epitopes and Immune Signatures in a Subset of Prostate Cancer

Faraz Hach, S. C. Sahinalp, C. Collins, 2017, Clinical Cancer Research.

Multiomics Characterization of Low-Grade Serous Ovarian Carcinoma Identifies Potential Biomarkers of MEK Inhibitor Sensitivity and Therapeutic Vulnerability

C. Collins, S. Volik, Yen-Yi Lin, 2021, Cancer Research.

Establishment of a neuroendocrine prostate cancer model driven by the RNA splicing factor SRRM4

C. Collins, M. Gleave, Yen-Yi Lin, 2017, Oncotarget.

Discovery and genotyping of novel sequence insertions in many sequenced individuals

Faraz Hach, Tunga Güngör, Can Alkan, 2017, Bioinform..

Computational identification of micro‐structural variations and their proteogenomic consequences in cancer

Faraz Hach, Haixu Tang, Süleyman Cenk Sahinalp, 2018, Bioinform..

Framework of Intrinsic Immune Landscape of Dormant Prostate Cancer

C. Collins, Yen-Yi Lin, Yuzhuo Wang, 2022, Cells.

BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma

Yuzhuo, Faraz Hach, S. C. Sahinalp, 2019, Genome Medicine.

Integrated Multi-omics Molecular Subtyping Predicts Therapeutic Vulnerability in Malignant Peritoneal Mesothelioma

Faraz Hach, S. C. Sahinalp, C. Collins, 2018 .

Typhoid toxin sorting and exocytic transport from Salmonella Typhi-infected cells

Yen-Yi Lin, J. Galán, M. Lara-Tejero, 2021, bioRxiv.

CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population

Faraz Hach, Colin Collins, Süleyman Cenk Sahinalp, 2012, WABI.

CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme

Faraz Hach, Yen-Yi Lin, Hossein Asghari, 2019, Bioinform..

METHODS FOR THE DETECTION OF SINGLE NUCLEOTIDE VARIANTS AND INDELS FROM CELL-FREE DNA

Ibrahim Numanagić, Yen-Yi Lin, B. McConeghy, 2016 .

The Antiproliferation Activity of Ganoderma formosanum Extracts on Prostate Cancer Cells

Yen-Yi Lin, Jui-Ming Liu, K. Cheng, 2020, Mycobiology.

BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma

Faraz Hach, S. C. Sahinalp, C. Collins, 2018, Genome Medicine.

Influence of ADT on B7-H3 expression during CRPC progression from hormone-naïve prostate cancer.

C. Collins, S. Volik, M. Gleave, 2023, Cancer gene therapy.

Clinical Phenotype Prediction From Single-cell RNA-seq Data using Attention-Based Neural Networks

C. Collins, S. Volik, Yen-Yi Lin, 2023, bioRxiv.

Identification of gene signature for treatment response to guide precision oncology in clear-cell renal cell carcinoma

Faraz Hach, Yen-Yi Lin, C. Kollmannsberger, 2020, Scientific Reports.

Establishment and validation of preclinical models of SMARCA4-inactivated and ARID1A/ARID1B co-inactivated dedifferentiated endometrial carcinoma.

C. Collins, S. Volik, Yen-Yi Lin, 2023, Gynecologic oncology.

BAP1 Loss Predicts Therapeutic Vulnerability in Malignant Peritoneal Mesothelioma

Faraz Hach, S. C. Sahinalp, S. Volik, 2018 .

Integrated Multi-omics Molecular Subtyping Predicts Therapeutic Vulnerability in Malignant Peritoneal Mesothelioma

Faraz Hach, C. Collins, S. Volik, 2018 .

CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme

Faraz Hach, C. Collins, Yen-Yi Lin, 2020, Bioinform..