Y. Turpaz

发表

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.

Hanlee P. Ji, G. M. Fischer, Stephen C. Harris, 2006, Nature biotechnology.

Identification of individuals by trait prediction using whole-genome sequencing data

Eun Yong Kang, Smriti R. Ramakrishnan, Seunghak Lee, 2017, Proceedings of the National Academy of Sciences.

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

Kevin C. Dorff, Aaron M. Smalter, Stephen C. Harris, 2010, Nature Biotechnology.

Cistrome: an integrative platform for transcriptional regulation studies

Clifford A. Meyer, Yong Zhang, Myles A Brown, 2011, Genome Biology.

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array

Tyson A. Clark, C. Sugnet, A. Schweitzer, 2006, BMC Genomics.

Using RNA sample titrations to assess microarray platform performance and normalization techniques

Leming Shi, W. Jones, R. Shippy, 2006, Nature Biotechnology.

Deep Sequencing of 10,000 Human Genomes

Levi C. T. Pierce, E. Kirkness, N. Shah, 2016, bioRxiv.

Fast and accurate HLA typing from short-read next-generation sequence data with xHLA

E. Kirkness, J. Venter, J. Venter, 2017, Proceedings of the National Academy of Sciences.

Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity using 500K SNP Mapping Arrays

Y. Turpaz, P. Gardina, J. Cowell, 2008, BMC Genomics.

The Reproducibility of Lists of Differentially Expressed Genes in Microarray Studies

Weida Tong, Qian Xie, Huixiao Hong, 2007 .

Use of a mixed tissue RNA design for performance assessments on multiple microarray formats

James C. Fuscoe, Yudong D. He, Eric Blomme, 2005, Nucleic acids research.

Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA

P. S. Pine, B. Rosenzweig, K. Thompson, 2007, BMC biotechnology.

Correction

Eun Yong Kang, Smriti R. Ramakrishnan, Seunghak Lee, 1975, Nature.

The DNA Architectural Protein HMGB1 Facilitates RTA-Mediated Viral Gene Expression in Gamma-2 Herpesviruses

Jie Liang, Y. Turpaz, R. Sun, 2004, Journal of Virology.

Gene expression profiling of CML CD34+ cells prior to imatinib therapy reveals differences between patients with and without subsequent complete cytogenetic response

Y. Turpaz, C. Harrington, S. McWeeney, 2005 .

Gene model correction for PVRIG in single cell and bulk sequencing data enables accurate detection and study of its functional relevance

Y. Turpaz, I. Shih, Z. Levine, 2022, bioRxiv.

CYP4F2 genetic variant alters required warfarin dose.

Y. Turpaz, B. Gage, T. Awad, 2008, Blood.

CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues

Jie Liang, Zheng Ouyang, T. Andrew Binkowski, 2006, Nucleic Acids Res..

Identification of interspecies concordance of mechanisms of arsenic-induced bladder cancer.

Andrej Bugrim, Douglas C Wolf, S. Hester, 2007, Toxicology in vitro : an international journal published in association with BIBRA.

Whole-genome sequencing identifies common-to-rare variants associated with human blood metabolites

Amalio Telenti, C Thomas Caskey, Nicholas J Schork, 2017, Nature Genetics.

The blood DNA virome in 8,000 humans

E. Kirkness, J. Venter, A. Telenti, 2017, PLoS pathogens.

Candidate glioblastoma development gene identification using concordance between copy number abnormalities and gene expression level changes

Michael R Rossi, Y. Turpaz, L. Hawthorn, 2007, Genes, chromosomes & cancer.

with imatinib response in chronic-phase chronic myeloid leukemia patients treated cells to predict major cytogenetic + A gene expression signature of CD34

Jennifer L. Snead, Y. Turpaz, C. Harrington, 2011 .

A gene expression signature of CD34+ cells to predict major cytogenetic response in chronic-phase chronic myeloid leukemia patients treated with imatinib.

Beth Wilmot, Shannon K McWeeney, Jennifer L. Snead, 2010, Blood.

Deep sequencing of 10,000 human genomes

Levi C. T. Pierce, Ahmed Moustafa, Amalio Telenti, 2016, Proceedings of the National Academy of Sciences.

Comprehensive analysis of loss of heterozygosity events in glioblastoma using the 100K SNP mapping arrays and comparison with copy number abnormalities defined by BAC array comparative genomic hybridization

Paul Gardina, Y. Turpaz, D. Bailey, 2008, Genes, chromosomes & cancer.

Massively parallel pathogen identification using high‐density microarrays

Christopher Davies, Y. Turpaz, G. Kennedy, 2007, Microbial biotechnology.

Precision medicine screening using whole-genome sequencing and advanced imaging to identify disease risk in adults

Anders M. Dale, James B. Brewer, Victor Lavrenko, 2017, Proceedings of the National Academy of Sciences.

Use of diagnostic accuracy as a metric for evaluating laboratory proficiency with microarray assays using mixed-tissue RNA reference samples.

P S Pine, M Boedigheimer, B A Rosenzweig, 2008, Pharmacogenomics.

Correction

Eun Yong Kang, Smriti R. Ramakrishnan, Seunghak Lee, 2021, Journal of the history of the neurosciences.

Correction

Eun Yong Kang, Smriti R. Ramakrishnan, Seunghak Lee, 2020, The Clinical neuropsychologist.

504 PVRIG, a novel T cell checkpoint, is preferentially expressed in TLS on stem-like memory T cells, potentially inhibiting their expansion

Y. Turpaz, Amit Novik, E. Ophir, 2022, Regular and Young Investigator Award Abstracts.

Whole-genome sequencing identifies common-to-rare variants associated with human blood metabolites

E. Kirkness, J. Venter, N. Schork, 2017, Nature Genetics.

DNA Copy Number Analysis in Gastrointestinal Stromal Tumors Using Gene Expression Microarrays

C. Antonescu, E. Hubbell, Y. Turpaz, 2008, Cancer informatics.

Overlay Tool© for aCGHViewer©: An Analysis Module Built for aCGHViewer© used to Perform Comparisons of Data Derived from Different Microarray Platforms

Y. Turpaz, D. Bailey, J. Cowell, 2007, Cancer informatics.

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

Todd H. Stokes, Kevin C. Dorff, Aaron M. Smalter, 2010, Nature Biotechnology.

Detecting affiliation in colaughter across 24 societies

Eun Yong Kang, Smriti R. Ramakrishnan, Seunghak Lee, 2016 .

No major flaws in “Identification of individuals by trait prediction using whole-genome sequencing data”

Eun Yong Kang, Smriti R. Ramakrishnan, Seunghak Lee, 2017, bioRxiv.