E. Marchiori

A. G. Steenbeek, A. Eiben, E. Marchiori, 1998, 1998 IEEE International Conference on Evolutionary Computation Proceedings. IEEE World Congress on Computational Intelligence (Cat. No.98TH8360).

Chapter 10 How to Handle Constraints with Evolutionary Algorithms

A. Eiben, E. Marchiori, Niels Bohrweg, 2001 .

Estimating Metabolic Fluxes Using a Maximum Network Flexibility Paradigm

Richard A. Notebaart, M. Huynen, E. Marchiori, 2015, PloS one.

The importance of Chargaff’s second parity rule for genomic signatures in metagenomics

E. Marchiori, M. Jetten, Dimitrios Mavroeidis, 2017, bioRxiv.

A Survey on Evolutionary Analysis in PPI Networks

Elena Marchiori, Pavol Jancura, E. Marchiori, 2012 .

Genomic signatures for metagenomic data analysis: Exploiting the reverse complementarity of tetranucleotides

Elena Marchiori, Fabio Gori, Dimitrios Mavroedis, 2011, 2011 IEEE International Conference on Systems Biology (ISB).

Retail Store Workforce Forecasting With Aggregated Output Regression

E. Marchiori, T. V. Laarhoven, 2016 .

Prerequisites and AI challenges for model-based Anti-Money Laundering

E. Marchiori, M. Oeben, J. Goudsmit, 2019, IJCAI 2019.

Robust Peak D etection and Alignment of nanoLC-FT Mass Spectrom etry D ata

E. Marchiori, J. Heringa, C. Jimenez, 2017 .

The metagenomic basis of anammox metabolism in Candidatus 'Brocadia fulgida'.

S. Tringe, E. Marchiori, M. Jetten, 2011, Biochemical Society transactions.

Biomarker discovery with SELDI-TOF MS in human urine associated with early renal injury: evaluation with computational analytical tools.

E. Marchiori, J. Wetzels, L. P. Van den Heuvel, 2007, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

Iterated Large-margin Discriminant Analysis for Feature Dimensionality Reduction in Medical Image Retrieval

Elena Marchiori, Jingyan Wang, E. Marchiori, 2011 .

Automated detection of white matter hyperintensities of all sizes in cerebral small vessel disease.

Nico Karssemeijer, Tom Heskes, Elena Marchiori, 2016, Medical physics.

Bayesian learning w ith local support vector m achines for cancer classification w ith gene expression data

M. Sebag, E. Marchiori, 2017 .

Specifying the molecular pattern of sporadic parathyroid tumorigenesis-The Y282D variant of the GCM2 gene.

M. Pelizzo, E. Marchiori, D. Rubello, 2017, Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie.

Deep learning for Alzheimer's disease diagnosis: A survey

Seyedhamidreza Shahabi Haghighi, E. Marchiori, S. Ghomi, 2022, Artif. Intell. Medicine.

A P red icate Transformer for U nification

E. Marchiori, L. Colussi, 2017 .

Biases of network drug – target interaction data

E. Marchiori, T. V. Laarhoven, 2014 .

Improvements in structural contact prediction: opportunities in prediction diculty and pairing preference of amino acids

E. Marchiori, M. Liebrand, 2014 .

Hit Miss Networks

E. Marchiori, 2022 .

T.R. - Applications of Evolutionary Computing

Elena Marchiori, David Corne, Jean-Arcady Meyer, 2003 .

Pattern Recognition in Bioinformatics

Elena Marchiori, Tom Heskes, Tjeerd M. H. Dijkstra, 2010 .

Convolutional neural networks to predict brain tumor grades and Alzheimer’s disease with MR spectroscopic imaging data

Jeroen J. Jansen, E. Marchiori, Twan van Laarhoven, 2022, PloS one.

Dividing Protein Interaction Networks for Modular Network

E. Marchiori, P. Jancura, 2010 .

How to handle constraints with evolutionary algorithms

Elena Marchiori, A. E. Eiben, B.G.W. Craenen, 2001 .

Proving correctness of Concurrent Constraint Programs

Maurizio Gabbrielli, Elena Marchiori, Frank S. de Boer, 1994, ICLP Workshop: Verification and Analysis of Logic Languages.

Ensemble feuture ranking

Elena Marchiori, Antoine Cornuéjols, Michèle Sebag, 2004 .

Applications of Evolutionary Computing: Evoworkshops 2003

Elena Marchiori, David Corne, Stefano Cagnoni, 2003 .

Applications of Evolutionary Computing: Evoworkshops: EvoBIO, EvoCOMNET, EvoHot, EvoIASP, EvoMUSART, and EvoSTOC (Lecture Notes in Computer Science)

Rolf Drechsler, Franz Rothlauf, Elena Marchiori, 2005 .

A methodology for detecting the orthology signal in a PPI network at a functional complex level

E. Marchiori, P. Jancura, E. Mavridou, 2012, BMC Bioinformatics.

Generalized Convolution Spectral Mixture for Multitask Gaussian Processes

Elena Marchiori, Kai Chen, Twan van Laarhoven, 2018, IEEE Transactions on Neural Networks and Learning Systems.

Flux Measurement Selection in Metabolic Networks

Elena Marchiori, Martijn A. Huynen, Wout Megchelenbrink, 2011, PRIB.

Knowledge-Based Evolutionary Search for Inductive Concept Learning

F. Divina, E. Marchiori, 2005 .

Analysis of Proteomic Pattern Data for Cancer Detection

Elena Marchiori, Aad van der Vaart, Kees Jong, 2004, EvoWorkshops.

Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation pdf

Nico Karssemeijer, Elena Marchiori, Purang Abolmaesumi, 2017, MICCAI.

Local Network Community Detection with Continuous Optimization of Conductance and Weighted Kernel K-Means

Elena Marchiori, Twan van Laarhoven, E. Marchiori, 2016, J. Mach. Learn. Res..

Local community detection by seed expansion: from conductance to weighted kernel 1-mean optimization pdf

Elena Marchiori, Twan van Laarhoven, E. Marchiori, 2016, ArXiv.

Axioms for graph clustering quality functions

Elena Marchiori, Twan van Laarhoven, E. Marchiori, 2013, J. Mach. Learn. Res..

An axiomatic study of objective functions for graph clustering pdf

Elena Marchiori, Twan van Laarhoven, E. Marchiori, 2013, ArXiv.

Graph clustering with local search optimization: the resolution bias of the objective function matters most.

Elena Marchiori, Twan van Laarhoven, E. Marchiori, 2013, Physical review. E, Statistical, nonlinear, and soft matter physics.

Robust Community Detection Methods with Resolution Parameter for Complex Detection in Protein Protein Interaction Networks

Elena Marchiori, Twan van Laarhoven, E. Marchiori, 2012, PRIB.

Complex Detection in Protein-Protein Interaction Networks: A Compact Overview for Researchers and Practitioners

Elena Marchiori, Clara Pizzuti, Simona E. Rombo, 2012, EvoBIO.

DEEN: A Simple and Fast Algorithm for Network Community Detection

Elena Marchiori, Dimitrios Mavroeidis, Pavol Jancura, 2011, CIBB.

Cross-platform array comparative genomic hybridization meta-analysis separates hematopoietic and mesenchymal from epithelial tumors

C Caldas, A. V. D. Vaart, H. Grabsch, 2007, Oncogene.

Breakpoint identification and smoothing of array comparative genomic hybridization data

Elena Marchiori, Aad van der Vaart, Bauke Ylstra, 2004, Bioinform..

MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks

Elena Marchiori, Gianluigi Folino, Fabio Gori, 2010, Bioinform..

Feature selection for k-means clustering stability: theoretical analysis and an algorithm

Elena Marchiori, Dimitrios Mavroeidis, E. Marchiori, 2013, Data Mining and Knowledge Discovery.

An Iterated Heuristic Algorithm for the Set Covering Problem

Elena Marchiori, Adri G. Steenbeek, E. Marchiori, 1998, WAE.

Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data

Elena Marchiori, Gianluigi Folino, Fabio Gori, 2009, PRIB.

Clustering Metagenome Short Reads Using Weighted Proteins

Elena Marchiori, Gianluigi Folino, Fabio Gori, 2009, EvoBIO.

Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting

Kai Ye, Elena Marchiori, Jaap Heringa, 2008, Bioinform..

Chromosomal Breakpoint Detection in Human Cancer

Elena Marchiori, Aad van der Vaart, Bauke Ylstra, 2003, EvoWorkshops.

Finding clusters using support vector classifiers

Elena Marchiori, Aad van der Vaart, Kees Jong, 2003, ESANN.

A Feature Selection Algorithm for Detecting Subtype Specific Functional Sites from Protein Sequences for Smad Receptor Binding

Elena Marchiori, Jaap Heringa, K. Anton Feenstra, 2006, 2006 5th International Conference on Machine Learning and Applications (ICMLA'06).

Evolutionary Methods for the Construction of Cryptographic Boolean Functions

Elena Marchiori, Julian Francis Miller, Lejla Batina, 2015, EuroGP.

Combining Evolutionary Computation and Algebraic Constructions to Find Cryptography-Relevant Boolean Functions

Elena Marchiori, Lejla Batina, Domagoj Jakobovic, 2014, PPSN.

Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes

S. Tringe, E. Marchiori, S. V. van Hijum, 2013, BMC Genomics.

Robust SVM-Based Biomarker Selection with Noisy Mass Spectrometric Proteomic Data

Elena Marchiori, Connie R. Jimenez, Mikkel West-Nielsen, 2006, EvoWorkshops.

Feature Selection for Classification with Proteomic Data of Mixed Quality

Elena Marchiori, Niels H. H. Heegaard, Connie R. Jimenez, 2005, 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Deep multi-scale location-aware 3D convolutional neural networks for automated detection of lacunes of presumed vascular origin

Nico Karssemeijer, Elena Marchiori, Tom Heskes, 2016, NeuroImage: Clinical.

Proving concurrent constraint programs correct

Maurizio Gabbrielli, Elena Marchiori, Frank S. de Boer, 1994, POPL '94.

Location Sensitive Deep Convolutional Neural Networks for Segmentation of White Matter Hyperintensities

Elena Marchiori, Tom Heskes, Bram van Ginneken, 2016, Scientific Reports.

Non-uniform patch sampling with deep convolutional neural networks for white matter hyperintensity segmentation

Nico Karssemeijer, Elena Marchiori, Tom Heskes, 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

Describing the Orthology Signal in a PPI Network at a Functional, Complex Level

Elena Marchiori, Beatriz Pontes, Pavol Jancura, 2011, ISBRA.

Tools for computational processing of LC-MS datasets: A user's perspective

Elena Marchiori, Jaap Heringa, Marius C. Codrea, 2007, Comput. Methods Programs Biomed..

Cutting Graphs Using Competing Ant Colonies and an Edge Clustering Heuristic

Elena Marchiori, Max Hinne, E. Marchiori, 2011, EvoCOP.

Dividing protein interaction networks for modular network comparative analysis

Elena Marchiori, Pavol Jancura, E. Marchiori, 2010, Pattern Recognit. Lett..

A genetic local search algorithm for random binary constraint satisfaction problems

Elena Marchiori, Adri G. Steenbeek, E. Marchiori, 2000, SAC '00.

Genetic, Iterated and Multistart Local Search for the Maximum Clique Problem

Elena Marchiori, E. Marchiori, 2002, EvoWorkshops.

Evolutionary Algorithms for the Satisfiability Problem

Elena Marchiori, Claudio Rossi, Jens Gottlieb, 2002, Evolutionary Computation.

Evolutionary Algorithms for the Satisa bility Problem

Elena Marchiori, Claudio Rossi, Jens Gottlieb, 2002 .

Solving constraint satisfaction problems with heuristic-based evolutionary algorithms

Elena Marchiori, A. E. Eiben, B.G.W. Craenen, 2000, Proceedings of the 2000 Congress on Evolutionary Computation. CEC00 (Cat. No.00TH8512).

A flipping genetic algorithm for hard 3-SAT problems

Elena Marchiori, Claudio Rossi, E. Marchiori, 1999 .

Incorporating Dependencies in Spectral Kernels for Gaussian Processes

Kai Chen, Elena Marchiori, Twan van Laarhoven, 2019, ECML/PKDD.

A methodology for detecting the orthology signal in a PPI network at a functional complex level

Elena Marchiori, Pavol Jancura, Eleftheria Mavridou, 2012, BMC Bioinformatics.

Evolutionary training of CLP-constrained neural networks

Elena Marchiori, Claudio Rossi, Massimo Marchiori, 1996 .

Solving Binary Constraint Satisfaction Problems Using Evolutionary Algorithms with an Adaptive Fitness Function

Elena Marchiori, Jano I. van Hemert, A. E. Eiben, 1998, PPSN.

Spectral-Spatial Classification of Hyperspectral Images: Three Tricks and a New Learning Setting

Elena Marchiori, Lutgarde M. C. Buydens, Twan van Laarhoven, 2018, Remote. Sens..

Evolutionary Algorithms with On-the-Fly Population Size Adjustment

Elena Marchiori, A. E. Eiben, V. A. Valkó, 2004, PPSN.

An Evolutionary Algorithm for Large Scale Set Covering Problems with Application to Airline Crew Scheduling

Elena Marchiori, Adri G. Steenbeek, E. Marchiori, 2000, EvoWorkshops.

Class Conditional Nearest Neighbor for Large Margin Instance Selection

Elena Marchiori, E. Marchiori, 2010, IEEE Transactions on Pattern Analysis and Machine Intelligence.

Hit Miss Networks with Applications to Instance Selection

Elena Marchiori, E. Marchiori, 2008, J. Mach. Learn. Res..

Mining Clusters with Association Rules

Elena Marchiori, Walter A. Kosters, Ard A. J. Oerlemans, 1999, IDA.

Domain Adaptation with Randomized Expectation Maximization pdf

Elena Marchiori, Twan van Laarhoven, E. Marchiori, 2018, ArXiv.

Handling continuous attributes in an evolutionary inductive learner

Federico Divina, Elena Marchiori, F. Divina, 2005, IEEE Transactions on Evolutionary Computation.

Handling Continuous Attributes in an

Federico Divina, Elena Marchiori, Evolutionary Inductive Learner, 2005 .

Evolutionary Concept Learning

Federico Divina, Elena Marchiori, F. Divina, 2002, GECCO.

Deep learning for automatic stereotypical motor movement detection using wearable sensors in autism spectrum disorders pdf

Cesare Furlanello, Elena Marchiori, N. M. Rad, 2017, Signal Process..

Class Dependent Feature Weighting and K-Nearest Neighbor Classification

Elena Marchiori, E. Marchiori, 2013, PRIB.

Multi-view analysis of unregistered medical images using cross-view transformers pdf

Elena Marchiori, Yao Tong, Gijs van Tulder, 2021, MICCAI.

Design of Abstract Domains Using First-Order Logic

Elena Marchiori, E. Marchiori, 1999, Theor. Comput. Sci..

Prime Factorizations of Abstract Domains Using First Order Logic

Elena Marchiori, E. Marchiori, 1996, ALP.

Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics

Elena Marchiori, Jason H. Moore, E. Marchiori, 2007, Lecture Notes in Computer Science.

Biases of Drug-Target Interaction Network Data

Elena Marchiori, Twan van Laarhoven, E. Marchiori, 2014, PRIB.

Combining Logic and Control to Characterize Global Invariants of Prolog Programs

Elena Marchiori, Massimo Marchiori, Livio Colussi, 1994, ICLP Workshop: Verification and Analysis of Logic Languages.

Generalized Spectral Mixture Kernels for Multi-Task Gaussian Processes pdf

Elena Marchiori, Kai Chen, Perry Groot, 2018, ArXiv.

Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics

Elena Marchiori, Jason H. Moore, Jagath C. Rajapakse, 2007, Lecture Notes in Computer Science.

Novelty Detection using Deep Normative Modeling for IMU-Based Abnormal Movement Monitoring in Parkinson’s Disease and Autism Spectrum Disorders

Cesare Furlanello, Elena Marchiori, N. M. Rad, 2018, Sensors.

A Logic for Variable Aliasing in Logic Programs

Elena Marchiori, E. Marchiori, 1994, ALP.

Ensemble Feature Ranking

Elena Marchiori, Michèle Sebag, Antoine Cornuéjols, 2004, PKDD.

Feature selection in proteomic pattern data with support vector machines

Elena Marchiori, Michèle Sebag, Aad van der Vaart, 2004, 2004 Symposium on Computational Intelligence in Bioinformatics and Computational Biology.

Ensemble Learning with Evolutionary Computation: Application to Feature Ranking

Elena Marchiori, Michèle Sebag, Kees Jong, 2004, PPSN.

Machine learning for healthcare using wearable sensors

Elena Marchiori, N. M. Rad, Nastaran Mohammadian Rad, 2021, Digital Health.

Feature selection for k-means clustering stability: theoretical analysis and an algorithm

E. Marchiori, Dimitrios Mavroeidis, 2014, Data Mining and Knowledge Discovery.

Evolutionary analysis in PPI networks and applications

P. Jancura, J. Mooij, E. Marchiori, 2008 .

Proving concurrent constraint programs correct

Maurizio Gabbrielli, Elena Marchiori, Frank S. de Boer, 1997, TOPL.

Evaluating diagnostic content of AI-generated radiology reports of chest X-rays

Elena Marchiori, Fabio Massimo Zanzotto, Twan van Laarhoven, 2021, Artif. Intell. Medicine.

Elena Marchiori, Ida G. Sprinkhuizen-Kuyper, Stein Keijzers, 2013, ECAL.

A Novel Stability Based Feature Selection Framework for k-means Clustering

Elena Marchiori, Dimitrios Mavroeidis, E. Marchiori, 2011, ECML/PKDD.

Improving Multi-Relief for Detecting Specificity Residues from Multiple Sequence Alignments

Elena Marchiori, E. Marchiori, 2010, EvoBIO.

Bayesian Learning with Local Support Vector Machines for Cancer Classification with Gene Expression Data

Elena Marchiori, Michèle Sebag, M. Sebag, 2005, EvoWorkshops.

Combining Local Search and Fitness Function Adaptation in a GA for Solving Binary Constraint Satisfaction Problems

Elena Marchiori, A. E. Eiben, Bart G. W. Craenen, 2000, GECCO.

Combining Constraint Processing and Genetic Algorithms for Constraint Satisfaction Problems

Elena Marchiori, E. Marchiori, 1997, ICGA.

PCA, Eigenvector Localization and Clustering for Side-Channel Attacks on Cryptographic Hardware Devices

Elena Marchiori, Lejla Batina, Dimitrios Mavroeidis, 2012, ECML/PKDD.

On Termination of Constraint Logic Programs

Elena Marchiori, Massimo Marchiori, Livio Colussi, 1995, CP.

Proving run-time properties of general programs w.r.t. constructive negation

E. Marchiori, E. Marchiori, 1992 .

Machine learning for network data

T. M. van Laarhoven, E. Marchiori, T. V. Laarhoven, 2014 .

Gaussian processes with skewed Laplace spectral mixture kernels for long-term forecasting

E. Marchiori, Twan van Laarhoven, Kai Chen, 2020, Machine Learning.

A transformation system for CLP with dynamic scheduling and CCP

Sandro Etalle, Maurizio Gabbrielli, Elena Marchiori, 1997, PEPM.

A Dataflow Semantics for Constraint Logic Programs

Elena Marchiori, Massimo Marchiori, Livio Colussi, 1995, PLILP.

Reasoning about Prolog programs: From modes through types to assertions

K. Apt, E. Marchiori, 1994, Formal Aspects of Computing.

A declarative approach for first-order built-in's of Prolog

Elena Marchiori, Krzysztof R. Apt, Catuscia Palamidessi, 1992, Applicable Algebra in Engineering, Communication and Computing.

A Theory of First-Order Built-in's of Prolog

Elena Marchiori, Krzysztof R. Apt, Catuscia Palamidessi, 1992, ALP.

Robust Peak Detection and Alignment of nanoLC-FT Mass Spectrometry Data

Elena Marchiori, Jaap Heringa, Marius C. Codrea, 2007, EvoBIO.

Proceedings of the 5th European conference on Evolutionary computation, machine learning and data mining in bioinformatics

E. Marchiori, J. Moore, Jagath Rajapakse, 2007 .