D. Knowles

发表

Volumetric Semantic Segmentation Using Pyramid Context Features

Jitendra Malik, Jonathan T. Barron, Pablo Andrés Arbeláez, 2013, 2013 IEEE International Conference on Computer Vision.

A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm

Charless C. Fowlkes, D. W. Knowles, M. Eisen, 2008, Cell.

Visual Exploration of Three-Dimensional Gene Expression Using Physical Views and Linked Abstract Views

B. Hamann, M. Biggin, D. Knowles, 2007, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates

Jitendra Malik, Hans Hagen, Bernd Hamann, 2006, EuroVis.

A Conserved Developmental Patterning Network Produces Quantitatively Different Output in Multiple Species of Drosophila

Charless C. Fowlkes, Miriah D. Meyer, D. W. Knowles, 2011, PLoS genetics.

Visually Relating Gene Expression and in vivo DNA Binding Data

Bernd Hamann, Michael I. Jordan, Gunther H. Weber, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

James B. Brown, D. W. Knowles, P. Bickel, 2009, Genome Biology.

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline

Charless C. Fowlkes, D. W. Knowles, M. Eisen, 2006, Genome Biology.

Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm

D. W. Knowles, Daniel A. Pollard, Venky N. Iyer, 2008, PLoS biology.

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics

Charless C. Fowlkes, Jitendra Malik, D. Sudar, 2006, Genome Biology.

Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data

Hans Hagen, Bernd Hamann, Oliver Rübel, 2010, ICCS.

Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data

O. Rubel, G.H. Weber, Min-Yu Huang, 2010, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Mapping organism expression levels at cellular resolution in developing Drosophila

Mark D. Biggin, Damir Sudar, David W. Knowles, 2001, SPIE BiOS.

Mapping organism expression levels at cellular resolution in developing Drosophila

D. Sudar, M. Biggin, D. Knowles, 2001, Microscopy and Microanalysis.

Building quantitative, three‐dimensional atlases of gene expression and morphology at cellular resolution

D. W. Knowles, David W Knowles, Mark D Biggin, 2013, Wiley interdisciplinary reviews. Developmental biology.

3d morphology and gene expression in the drosophila blastoderm at cellular resolution

Charless C. Fowlkes, M. Eisen, Jitendra Malik, 2006 .

Correction: Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm

Daniel A. Pollard, Venky N. Iyer, M. Eisen, 2008, PLoS Biology.

Parametric identification of concentration-dependent gene regulation networks

D. W. Knowles, C. Tomlin, A. Aswani, 2015 .

Automated local bright feature image analysis of nuclear protein distribution identifies changes in tissue phenotype.

Damir Sudar, D. W. Knowles, David W Knowles, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Cooperative action between band 3 and glycophorin A in human erythrocytes: immobilization of band 3 induced by antibodies to glycophorin A.

D. W. Knowles, D. Knowles, E. Evans, 1994, Biophysical journal.

Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics

Charless C. Fowlkes, D. W. Knowles, Jitendra Malik, 2006, Genome Biology.

The control of tissue architecture over nuclear organization is crucial for epithelial cell fate

David W. Knowles, D. W. Knowles, D. Knowles, 2007, Journal of Cell Science.

Comments on the paper ‘A novel 3D wavelet‐based filter for visualizing features in noisy biological data’, by Moss et al.

D. Knowles, C. L. Hendriks, C L Luengo Hendriks, 2007, Journal of microscopy.

Visual Exploration of Three-Dimensional Gene Expression Using Physical Views and Linked Abstract Views

Jitendra Malik, Hans Hagen, Bernd Hamann, 2007, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

PointCloudXplore : Visual Analysis of 3 D Gene Expression Data Using Linked Physical and Abstract Data Views

M. Eisen, D. Sudar, B. Hamann, 2006 .

Membrane dynamics of the water transport protein aquaporin-1 in intact human red cells.

D. W. Knowles, D. Knowles, D. Golan, 1999, Biophysical journal.

3D Image-Based Whole Embryo Morphology and Gene Expression Mapping for the Drosophila blastoderm

D. Knowles, 2015 .

Novel Image Analysis to Link Sub-Nuclear Distribution of Proteins with Cell Phenotype in Mammary Cancer

D. W. Knowles, D. Sudar, D. Knowles, 2003 .

Molecular basis for membrane rigidity of hereditary ovalocytosis. A novel mechanism involving the cytoplasmic domain of band 3.

D. W. Knowles, J. Conboy, D. Knowles, 1992, The Journal of clinical investigation.

Phenotype clustering of breast epithelial cells in confocal images based on nuclear protein distribution analysis

Hanchuan Peng, Fuhui Long, Damir Sudar, 2006, BMC Cell Biology.

Erythrocyte membrane vesiculation: model for the molecular mechanism of protein sorting.

D. W. Knowles, D. Knowles, L. Tilley, 1997, Proceedings of the National Academy of Sciences of the United States of America.

NuMA influences higher order chromatin organization in human mammary epithelium.

D. W. Knowles, I. Mian, D. Knowles, 2006, Molecular biology of the cell.

Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data

Hans Hagen, Bernd Hamann, Oliver Rübel, 2012, Visualization in Medicine and Life Sciences II.

Mapping Organism Expression Levels at Cellular Resolution in Developing Drosophila

D. Sudar, M. Biggin, D. Knowles, 2001, Microscopy and Microanalysis.

Analysis of Integral Membrane Protein Contributions to the Deformability and Stability of the Human Erythrocyte Membrane*

D. W. Knowles, P. Low, D. Knowles, 2001, The Journal of Biological Chemistry.

Interactions between integral membrane proteins and the cytoskeleton in red blood cells studied by measured molecular lateral diffusion

D. W. Knowles, D. Knowles, 1992 .

Enhancing image quality in cleared tissue with adaptive optics

Allan MacKenzie-Graham, Xiaodong Tao, Joel Kubby, 2016, Journal of biomedical optics.

Nonparametric identification of regulatory interactions from spatial and temporal gene expression data

James Brown, Claire J. Tomlin, Charless C. Fowlkes, 2010, BMC Bioinformatics.