Junpeng Zhang

发表

Correction to: Identifying miRNA synergism using multiple-intervention causal inference

Junpeng Zhang, Jiuyong Li, Thuc Duy Le, 2020, BMC Bioinformatics.

Identifying miRNA synergism using multiple-intervention causal inference

Jiuyong Li, T. Le, Lin Liu, 2019, BMC Bioinformatics.

From miRNA regulation to miRNA-TF co-regulation: computational approaches and challenges

Junpeng Zhang, Jiuyong Li, Thuc Duy Le, 2015, Briefings Bioinform..

LMSM: A modular approach for identifying lncRNA related miRNA sponge modules in breast cancer

Junpeng Zhang, Lin Liu, Jiuyong Li, 2019, bioRxiv.

miRLAB: An R Based Dry Lab for Exploring miRNA-mRNA Regulatory Relationships

Jiuyong Li, T. Le, Lin Liu, 2015, PloS one.

Identifying miRNA synergism using multiple-intervention causal inference

Jiuyong Li, T. Le, Lin Liu, 2019, BMC Bioinformatics.

Ensemble Methods for MiRNA Target Prediction from Expression Data

Jiuyong Li, T. Le, Lin Liu, 2015, PloS one.

Open Community Challenge Reveals Molecular Network Modules with Key Roles in Diseases

Donna K. Slonim, Junpeng Zhang, Daniel Marbach, 2018 .

A novel framework for inferring condition-specific TF and miRNA co-regulation of protein-protein interactions.

Jiuyong Li, Junpeng Zhang, Lin Liu, 2016, Gene.

ASDmiR: A Stepwise Method to Uncover miRNA Regulation Related to Autism Spectrum Disorder

Junpeng Zhang, Weili Jiang, Chenchen Xiong, 2020, Frontiers in Genetics.

Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction

Jiuyong Li, T. Le, Lin Liu, 2018, bioRxiv.

Construction and analysis of circular RNA molecular regulatory networks in clear cell renal cell carcinoma

Junpeng Zhang, Xiunan Li, Chuanyu Ma, 2019, Molecular medicine reports.

Open Community Challenge Reveals Molecular Network Modules with Key Roles in Diseases

Keith A. Boroevich, Mathew R Divine, Benjamin J. Hescott, 2019 .

Metabolomic identification of diagnostic plasma biomarkers in humans with chronic heart failure.

Bin Li, Wei Wang, Huihui Zhao, 2013, Molecular bioSystems.

Exploring cell-specific miRNA regulation with single-cell miRNA-mRNA co-sequencing data

Jiuyong Li, T. Le, Lin Liu, 2020, bioRxiv.

Computational Methods for Predicting Autism Spectrum Disorder from Gene Expression Data

Jiuyong Li, Thuc Duy Le, Thin Nguyen, 2020, ADMA.

Editorial: Computational Identification of ceRNA Regulation

Junpeng Zhang, Juan Xu, Yun Zheng, 2022, Frontiers in Molecular Biosciences.

First Knockdown Gene Expression in Bat (Hipposideros armiger) Brain Mediated by Lentivirus

Junpeng Zhang, Gareth Jones, Tengteng Zhu, 2013, Molecular Biotechnology.

Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer

Jiuyong Li, T. Le, Lin Liu, 2017, BMC Bioinformatics.

Inferring cell developmental stage-specific lncRNA regulation in the developing human neocortex with CDSlncR

Junpeng Zhang, Jiangtao Ma, Mengyi Huang, 2023, Frontiers in Molecular Neuroscience.

Inferring cell-specific lncRNA regulation with single-cell RNA-sequencing data in the developing human neocortex

Junpeng Zhang, Xiucai Ye, Jiangtao Ma, 2022, 2211.08084.

Inferring and analyzing module-specific lncRNA-mRNA causal regulatory networks in human cancer

Junpeng Zhang, Jiuyong Li, Thuc Duy Le, 2019, Briefings Bioinform..

LncmiRSRN: identification and analysis of long non‐coding RNA related miRNA sponge regulatory network in human cancer

Junpeng Zhang, Jiuyong Li, Thuc Duy Le, 2018, Bioinform..

Time to infer miRNA sponge modules

T. Le, Lin Liu, Junpeng Zhang, 2021, Wiley interdisciplinary reviews. RNA.

FrommiRNA regulation tomiRNA T̂F co-regulation: computational approaches and challenges

T. Le, Junpeng Zhang, Bing Liu, 2014 .

miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase

Kui Yu, Junpeng Zhang, Jie Gui, 2018, bioRxiv.

mRBioM: An Algorithm for the Identification of Potential mRNA Biomarkers From Complete Transcriptomic Profiles of Gastric Adenocarcinoma

Junpeng Zhang, N. Rao, Wenju Du, 2021, Frontiers in Genetics.

Identifying microRNA targets in epithelial-mesenchymal transition using joint-intervention causal inference

Junpeng Zhang, Jiuyong Li, Thuc Duy Le, 2017, CSBio.

A Study of the Single Point Mutation Loci in the Hepatitis B Virus Sequences via Optimal Risk and Preventive Sets with Weights

Qi Zhang, Junpeng Zhang, Jianfeng He, 2012, APWeb.

Computational methods for identifying miRNA sponge interactions

Junpeng Zhang, Jiuyong Li, Thuc Duy Le, 2016, Briefings Bioinform..

miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules

Jiuyong Li, T. Le, Lin Liu, 2018, bioRxiv.

Inferring condition-specific miRNA activity from matched miRNA and mRNA expression data

Junpeng Zhang, Jianfeng He, Jiuyong Li, 2014, Bioinform..

miRspongeR 2.0: an enhanced R package for exploring miRNA sponge regulation

T. Le, Lin Liu, Junpeng Zhang, 2022, Bioinformatics advances.

miRSM: an R package to infer and analyse miRNA sponge modules in heterogeneous data

T. Le, Lin Liu, Junpeng Zhang, 2021, RNA biology.

miRReg: A Framework for Studying miRNA Regulation in Tetralogy of Fallot

Nini Rao, Guangbin Wang, Junpeng Zhang, 2020, IEEE Access.

Identifying miRNA sponge modules using biclustering and regulatory scores

Jiuyong Li, T. Le, Lin Liu, 2017, BMC Bioinformatics.

Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction

Junpeng Zhang, Lin Liu, Jiuyong Li, 2018, BMC Bioinformatics.

Inferring functional miRNA-mRNA regulatory modules in epithelial-mesenchymal transition with a probabilistic topic model

Junpeng Zhang, Jianfeng He, Lei Ma, 2012, Comput. Biol. Medicine.

Identifying miRNA sponge modules using biclustering and regulatory scores

Junpeng Zhang, Jiuyong Li, Thuc Duy Le, 2017, BMC Bioinformatics.

Constraining and Summarizing Optimal Risk and Preventive Patterns in Medical Data

Junpeng Zhang, Jiuyong Li, Jianfeng He, 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering.

Identifying miRNA synergistic regulatory networks in heterogeneous human data via network motifs.

Jianfeng He, Jiuyong Li, Lin Liu, 2016, Molecular bioSystems.

Prediction of 30-Day Readmission: An Improved Gradient Boosting Decision Tree Approach

Lei Ma, Hongbin Wang, Yan Xiang, 2019, J. Medical Imaging Health Informatics.

SSEM: A Novel Self-Adaptive Stacking Ensemble Model for Classification

Junpeng Zhang, Zhenhua Chen, Lei Ma, 2019, IEEE Access.

Identifying direct miRNA-mRNA causal regulatory relationships in heterogeneous data

Junpeng Zhang, Jianfeng He, Jiuyong Li, 2014, J. Biomed. Informatics.

Pan-cancer characterization of ncRNA synergistic competition uncovers potential carcinogenic biomarkers

T. Le, Lin Liu, Junpeng Zhang, 2023, bioRxiv.

Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer

Junpeng Zhang, Jiuyong Li, Thuc Duy Le, 2017, BMC Bioinformatics.

Inferring cell-specific lncRNA regulation with single-cell RNA-sequencing data in the developing human neocortex

Junpeng Zhang, Xiucai Ye, Jiangtao Ma, 2022, 2211.08084.

Open Community Challenge Reveals Molecular Network Modules with Key Roles in Diseases

Benjamin J. Hescott, Ted E. Natoli, L. Cowen, 2018 .

miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules

Junpeng Zhang, Jiuyong Li, Thuc Duy Le, 2019, BMC Bioinformatics.

miRsponge: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules

Junpeng Zhang, Jiuyong Li, Lin Liu, 2018, bioRxiv.

A novel framework for inferring condition-specific TF and miRNA co-regulation of protein-protein interactions.

Jiuyong Li, T. Le, Lin Liu, 2016, Gene.

Metabolomic identification of diagnostic plasma biomarkers in humans with chronic heart failure.

Junpeng Zhang, Jianxin Chen, Huihui Zhao, 2013, Molecular bioSystems.

Inferring condition-specific miRNA activity from mathched miRNA and mRNA expression data

T. Le, Junpeng Zhang, Gregory J. Goodall, 2014 .

Additional file 7: of Identifying miRNA sponge modules using biclustering and regulatory scores

Jiuyong Li, T. Le, Lin Liu, 2017 .