Kai-Yao Huang

发表

miRTarBase 2020: updates to the experimentally validated microRNA–target interaction database

Fei Wang, Hsi-Yuan Huang, Yang-Chi-Dung Lin, 2019, Nucleic Acids Res..

A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs

Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu, 2015, BMC Bioinformatics.

Identifying Protein Phosphorylation Sites with Kinase Substrate Specificity on Human Viruses

Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu, 2012, PloS one.

Systematic Expression Profiling Analysis Identifies Specific MicroRNA-Gene Interactions that May Differentiate between Active and Latent Tuberculosis Infection

Julia Tzu-Ya Weng, J. T. Weng, Kai-Yao Huang, 2014, BioMed research international.

Systematic pipeline for the analysis of microRNA-gene interactions in active and latent TB infection

Julia Tzu-Ya Weng, J. T. Weng, Kai-Yao Huang, 2014, 2014 IEEE International Symposium on Bioelectronics and Bioinformatics (IEEE ISBB 2014).

A New Scheme to Predict Kinase-Specific Phosphorylation Sites on Protein Three-Dimensional Structures

Kai-Yao Huang, Tzong-Yi Lee, C. Tung, 2013, BIOINFORMATICS 2013.

Increase Trichomonas vaginalis detection based on urine routine analysis through a machine learning approach

Kai-Yao Huang, H. Ning, Hsin-Yao Wang, 2019, Scientific Reports.

Rapid classification of group B Streptococcus serotypes based on matrix-assisted laser desorption ionization-time of flight mass spectrometry and machine learning techniques

Kai-Yao Huang, Jorng-Tzong Horng, Hsin-Yao Wang, 2019, BMC Bioinformatics.

iDPGK: characterization and identification of lysine phosphoglycerylation sites based on sequence-based features

Kai-Yao Huang, S. Weng, Hui-Ju Kao, 2020, BMC Bioinform..

topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins

Tzong-Yi Lee, Cheng-Tsung Lu, Min-Gang Su, 2013, Nucleic Acids Res..

iDVIP: identification and characterization of viral integrase inhibitory peptides

Kai-Yao Huang, S. Weng, Hui-Ju Kao, 2022, Briefings Bioinform..

Transdermal nanolipoplex simultaneously inhibits subcutaneous melanoma growth and suppresses systemically metastatic melanoma by activating host immunity.

Kai-Yao Huang, S. Weng, Chia-Hung Chen, 2022, Nanomedicine : nanotechnology, biology, and medicine.

Incorporating deep learning and multi-omics autoencoding for analysis of lung adenocarcinoma prognostication

Tzong-Yi Lee, Kai-Yao Huang, Tzu-Hao Chang, 2020, Comput. Biol. Chem..

SuccSite: Incorporating Amino Acid Composition and Informative k-spaced Amino Acid Pairs to Identify Protein Succinylation Sites

Tzong-Yi Lee, Kai-Yao Huang, Hui-Ju Kao, 2020, Genom. Proteom. Bioinform..

Poly-γ-glutamic Acid Synthesis, Gene Regulation, Phylogenetic Relationships, and Role in Fermentation

Kai-Yao Huang, Tzong-Yi Lee, Sikhumbuzo Charles Kunene, 2017, International journal of molecular sciences.

Metagenomic analysis of the gut microbiome composition associated with vitamin D supplementation in Taiwanese infants

Kai-Yao Huang, S. Weng, Chia-Hung Chen, 2021, Scientific Reports.

dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications

Hsien-Da Huang, Tzong-Yi Lee, Kai-Yao Huang, 2018, Nucleic Acids Res..

dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins

Hsien-Da Huang, Tzong-Yi Lee, Min-Gang Su, 2015, Nucleic Acids Res..

A flexible liposomal polymer complex as a platform of specific and regulable immune regulation for individual cancer immunotherapy

Kai-Yao Huang, S. Weng, Chia-Hung Chen, 2023, Journal of Experimental & Clinical Cancer Research.

Machine Learning-Based Method for Obesity Risk Evaluation Using Single-Nucleotide Polymorphisms Derived from Next-Generation Sequencing

Bo-Yu Chu, Tzong-Yi Lee, Kai-Yao Huang, 2018, J. Comput. Biol..

Incorporating significant amino acid pairs and protein domains to predict RNA splicing-related proteins with functional roles

Tzong-Yi Lee, Julia Tzu-Ya Weng, Justin Bo-Kai Hsu, 2014, Journal of Computer-Aided Molecular Design.

Global characterization of macrophage polarization mechanisms and identification of M2-type polarization inhibitors

Kai-Yao Huang, Tzong-Yi Lee, N. Slavov, 2021, Cell reports.

A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases

Tzong-Yi Lee, Julia Tzu-Ya Weng, Kai-Yao Huang, 2016, BMC Systems Biology.

Genome-wide discovery of viral microRNAs based on phylogenetic analysis and structural evolution of various human papillomavirus subtypes

Tzong-Yi Lee, Julia Tzu-Ya Weng, Kai-Yao Huang, 2017, Briefings Bioinform..

Gene expression profiling identifies candidate biomarkers for active and latent tuberculosis

Tzong-Yi Lee, Julia Tzu-Ya Weng, Kai-Yao Huang, 2016, BMC Bioinformatics.

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications

Hsien-Da Huang, Yu-Ju Chen, Yi-Ju Chen, 2012, Nucleic Acids Res..

RegPhos 2.0: an updated resource to explore protein kinase–substrate phosphorylation networks in mammals

Hsien-Da Huang, Yu-Ju Chen, Yi-Ju Chen, 2014, Database J. Biol. Databases Curation.

ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins

Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu, 2013, BMC Bioinformatics.

A New Scheme to Characterize and Identify Protein Ubiquitination Sites

K. Robert Lai, Tzong-Yi Lee, Kai-Yao Huang, 2017, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities

K. Robert Lai, Tzong-Yi Lee, Neil Arvin Bretaña, 2015, BMC Bioinformatics.

Characterization and Identification of Lysine Succinylation Sites based on Deep Learning Method

Justin Bo-Kai Hsu, Kai-Yao Huang, tzong-Yi Lee, 2019, Scientific Reports.

Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas

K. Robert Lai, Tzong-Yi Lee, Kai-Yao Huang, 2017, BMC Systems Biology.

UbiNet: an online resource for exploring the functional associations and regulatory networks of protein ubiquitylation

K. Robert Lai, Tzong-Yi Lee, Julia Tzu-Ya Weng, 2016, Database J. Biol. Databases Curation.

Characterization and identification of lysine glutarylation based on intrinsic interdependence between positions in the substrate sites

Tzong-Yi Lee, Justin Bo-Kai Hsu, Kai-Yao Huang, 2019, BMC Bioinformatics.

UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase–substrate interactions

Kai-Yao Huang, Tzong-Yi Lee, Zhongyan Li, 2021, Database J. Biol. Databases Curation.

dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data

Tzong-Yi Lee, Kai-Yao Huang, Yu-Hsiang Chi, 2018, Nucleic Acids Res..

Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions

Tzong-Yi Lee, Min-Gang Su, Julia Tzu-Ya Weng, 2017, BMC Systems Biology.

Investigation and identification of protein γ-glutamyl carboxylation sites

Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu, 2011, BMC Bioinformatics.

A new scheme for strain typing of methicillin-resistant Staphylococcus aureus on the basis of matrix-assisted laser desorption ionization time-of-flight mass spectrometry by using machine learning approach

Tzong-Yi Lee, Kai-Yao Huang, Chun-Hsien Chen, 2018, PloS one.

Anticancer peptide Q7 suppresses the growth and migration of human endometrial cancer by inhibiting DHCR24 expression and modulating the AKT-mediated pathway

Kai-Yao Huang, S. Weng, Chia-Hung Chen, 2022, International journal of medical sciences.

Identification of subtypes of anticancer peptides based on sequential features and physicochemical properties

Kai-Yao Huang, S. Weng, Y. Tseng, 2021, Scientific Reports.

An interpretable rule-based diagnostic classification of diabetic nephropathy among type 2 diabetes patients

Tzong-Yi Lee, Julia Tzu-Ya Weng, Kai-Yao Huang, 2015, BMC Bioinformatics.

Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features

Tzong-Yi Lee, Kai-Yao Huang, Hsin-Yao Wang, 2017, BMC Bioinformatics.

GSHSite: Exploiting an Iteratively Statistical Method to Identify S-Glutathionylation Sites with Substrate Specificity

Tzong-Yi Lee, Cheng-Tsung Lu, Kai-Yao Huang, 2015, PloS one.

dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation

Yu-Ju Chen, Yi-Ju Chen, Tzong-Yi Lee, 2014, Nucleic Acids Res..

Exploiting Two-Layered Support Vector Machine to Predict Phosphorylation Sites on Virus Proteins

Tzong-Yi Lee, Neil Arvin Bretaña, Cheng-Tsung Lu, 2013 .

Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features

Kai-Yao Huang, Tzong-Yi Lee, S. Weng, 2017, BMC Bioinformatics.

Structural and functional characterization of β2‐glycoprotein I domain 1 in anti‐melanoma cell migration

Kai-Yao Huang, Tzong-Yi Lee, Yu-Shan Lin, 2019, Cancer science.

Characterization and identification of lysine glutarylation based on intrinsic interdependence between positions in the substrate sites

Kai-Yao Huang, Tzong-Yi Lee, J. B. Hsu, 2019, BMC Bioinformatics.

MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs

Tzong-Yi Lee, Justin Bo-Kai Hsu, Kai-Yao Huang, 2017, BMC Systems Biology.

Microbiome analysis of maternal and neonatal microbial communities associated with the different delivery modes based on 16S rRNA gene amplicon sequencing.

Kai-Yao Huang, Hui-Ju Kao, Jhih-Hua Jhong, 2023, Taiwanese journal of obstetrics & gynecology.