Hsien-Da Huang

发表

miRTarBase 2020: updates to the experimentally validated microRNA–target interaction database

Fei Wang, Hsi-Yuan Huang, Yang-Chi-Dung Lin, 2019, Nucleic Acids Res..

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

Hsien-Da Huang, A. Weiberg, Ming Wang, 2013, Science.

Systematic Analysis of the Association between Gut Flora and Obesity through High-Throughput Sequencing and Bioinformatics Approaches

Hsien-Da Huang, Chih-Min Chiu, Wei-Chih Huang, 2014, BioMed research international.

RNAcentral: A vision for an international database of RNA sequences.

Anton J. Enright, Albert J. Vilella, Mathew W. Wright, 2011, RNA.

Transcribed pseudogene ψPPM1K generates endogenous siRNA to suppress oncogenic cell growth in hepatocellular carcinoma

Hsien-Da Huang, C. Chiu, Jan-Gowth Chang, 2013, Nucleic acids research.

Arabidopsis Argonaute 2 regulates innate immunity via miRNA393(∗)-mediated silencing of a Golgi-localized SNARE gene, MEMB12.

Hsien-Da Huang, Shang Gao, N. Raikhel, 2011, Molecular cell.

PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups

Tzong-Yi Lee, Hsien-Da Huang, W. Chang, 2008, BMC Genomics.

MicroRNA‐122, a tumor suppressor microRNA that regulates intrahepatic metastasis of hepatocellular carcinoma

Hsien-Da Huang, M. Hsiao, Y. Chau, 2009, Hepatology.

MicroRNA-122 plays a critical role in liver homeostasis and hepatocarcinogenesis.

Hsien-Da Huang, M. Hsiao, A. Tsou, 2012, The Journal of clinical investigation.

Identifying transcriptional regulatory sites in the human genome using an integrated system.

Hsien-Da Huang, Jorng-Tzong Horng, A. Tsou, 2004, Nucleic acids research.

microRNA: a master regulator of cellular processes for bioengineering systems.

Hsien-Da Huang, S. Chien, J. Shyy, 2010, Annual review of biomedical engineering.

Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data

Tzong-Yi Lee, Hsien-Da Huang, Jorng-Tzong Horng, 2011, Nucleic acids research.

Computational identification of riboswitches based on RNA conserved functional sequences and conformations.

Hsien-Da Huang, Jorng-Tzong Horng, Tzu-Hao Chang, 2009, RNA.

Atheroprotective Flow Upregulates ITPR3 (Inositol 1,4,5-Trisphosphate Receptor 3) in Vascular Endothelium via KLF4 (Krüppel-Like Factor 4)-Mediated Histone Modifications

Hsi-Yuan Huang, Hsiao-Chin Hong, Hsien-Da Huang, 2019, Arteriosclerosis, thrombosis, and vascular biology.

Plant miRNAs found in human circulating system provide evidences of cross kingdom RNAi

Hsien-Da Huang, Yu-Chen Liu, Wen Liang Chen, 2017, BMC Genomics.

SNOSite: Exploiting Maximal Dependence Decomposition to Identify Cysteine S-Nitrosylation with Substrate Site Specificity

Hsien-Da Huang, Tzong-Yi Lee, Yu-Ju Chen, 2011, PloS one.

Incorporating Evolutionary Information and Functional Domains for Identifying RNA Splicing Factors in Humans

Hsien-Da Huang, Tzong-Yi Lee, Neil Arvin Bretaña, 2011, PloS one.

miR-103/107 promote metastasis of colorectal cancer by targeting the metastasis suppressors DAPK and KLF4.

Hsien-Da Huang, Feng-Mao Lin, John Y-J Shyy, 2012, Cancer research.

Investigating microRNA-Target Interaction-Supported Tissues in Human Cancer Tissues Based on miRNA and Target Gene Expression Profiling

Hsien-Da Huang, F. Lin, Hsiuying Wang, 2014, PloS one.

α-ketoglutarate orchestrates macrophage activation through metabolic and epigenetic reprogramming

Chih-Hung Chou, Hsien-Da Huang, K. Debackere, 2017, Nature Immunology.

Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis

Hsiao-Chin Hong, Hsien-Da Huang, Wei-Hsiang Lee, 2018, BMC Genomics.

Biclustering of transcriptome sequencing data reveals human tissue-specific circular RNAs

Hsien-Da Huang, Jianrong Li, Chun-Chi Liu, 2018, BMC Genomics.

MultiProtIdent: identifying proteins using database search and protein-protein interactions.

Jorng-Tzong Horng, Hsien-Da Huang, Li-Cheng Wu, 2005, Journal of proteome research.

The aquatic animals’ transcriptome resource for comparative functional analysis

Hsi-Yuan Huang, Chih-Hung Chou, Hsien-Da Huang, 2018, BMC Genomics.

Clusters of Nucleotide Substitutions and Insertion/Deletion Mutations Are Associated with Repeat Sequences

Hsien-Da Huang, Wei-Chi Wang, Michael J. McDonald, 2011, PLoS biology.

PredCRP: predicting and analysing the regulatory roles of CRP from its binding sites in Escherichia coli

Hsi-Yuan Huang, Hsien-Da Huang, Shinn-Ying Ho, 2018, Scientific Reports.

Honeysuckle aqueous extract and induced let-7a suppress dengue virus type 2 replication and pathogenesis.

Hsien-Da Huang, D. Gan, Yee‐Shin Lin, 2017, Journal of ethnopharmacology.

Source identification of HIV-1 transmission in three lawsuits Using Ultra-Deep pyrosequencing and phylogenetic analysis.

Chih-Hung Chou, Hsien-Da Huang, Szu-Wei Huang, 2020, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

TET1 suppresses cancer invasion by activating the tissue inhibitors of metalloproteinases.

Hsien-Da Huang, Y. Jeng, F. Lin, 2012, Cell reports.

MicroRNA-224 down-regulates Glycine N-methyltransferase gene expression in Hepatocellular Carcinoma

Chih-Hung Chou, Hsien-Da Huang, A. Tsou, 2018, Scientific Reports.

A panel of eight microRNAs is a good predictive parameter for triple-negative breast cancer relapse

Hsiao-Chin Hong, Hsien-Da Huang, Wei-Chih Huang, 2020, Theranostics.

Identifying the combination of genetic factors that determine susceptibility to cervical cancer

Hsien-Da Huang, Jorng-Tzong Horng, Li-Cheng Wu, 2004, IEEE Transactions on Information Technology in Biomedicine.

Computational analysis for identification of the extracellular matrix molecules involved in endometrial cancer progression

Tzong-Yi Lee, Hsien-Da Huang, J. B. Hsu, 2020, PloS one.

Bacterial Communities in Semen from Men of Infertile Couples: Metagenomic Sequencing Reveals Relationships of Seminal Microbiota to Semen Quality

Hsien-Da Huang, F. Lin, Chih-Min Chiu, 2014, PloS one.

Liver X Receptor/Retinoid X Receptor Pathway Plays a Regulatory Role in Pacing‐Induced Cardiomyopathy

Hsien-Da Huang, Tzu-Hao Chang, Yu-Sheng Lin, 2019, Journal of the American Heart Association.

Endothelium Mediates Hemodynamic-Induced Atherosclerosis Susceptibility Sterol Regulatory Element Binding Protein 2 Activation of NLRP 3 Inflammasome in

Traci L. Marin, Hsien-Da Huang, Wei-Chi Wang, 2013 .

AMP‐activated Protein Kinase Phosphorylation of Angiotensin‐Converting Enzyme 2 in Endothelium Mitigates Pulmonary Hypertension

Traci L. Marin, Hsi-Yuan Huang, Hsien-Da Huang, 2018, American journal of respiratory and critical care medicine.

Large-Scale Investigation of Human TF-miRNA Relations Based on Coexpression Profiles

Hsien-Da Huang, Shun-Long Weng, Ann-Ping Tsou, 2014, BioMed research international.

Integrated MicroRNA–mRNA Analysis Reveals miR-204 Inhibits Cell Proliferation in Gastric Cancer by Targeting CKS1B, CXCL1 and GPRC5A

Hsien-Da Huang, Chih-Hung Chou, Sirjana Shrestha, 2017, International journal of molecular sciences.

Incorporating structural characteristics for identification of protein methylation sites

Jorng-Tzong Horng, Hsien-Da Huang, Tzong-Yi Lee, 2009, J. Comput. Chem..

MethHC 2.0: information repository of DNA methylation and gene expression in human cancer

Hsien-Da Huang, Hsi-Yuan Huang, Jing Li, 2020, Nucleic Acids Res..

Incorporating support vector machine for identifying protein tyrosine sulfation sites

Jorng-Tzong Horng, Hsien-Da Huang, Tzong-Yi Lee, 2009, J. Comput. Chem..

Diversity and enterotype in gut bacterial community of adults in Taiwan

Hsien-Da Huang, Chih-Min Chiu, S. Weng, 2017, BMC Genomics.

Idi1 and Hmgcs2 Are Affected by Stretch in HL-1 Atrial Myocytes

Hsien-Da Huang, Tzu-Hao Chang, Yu-Sheng Lin, 2018, International journal of molecular sciences.

Oxidative Stress Activates Endothelial Innate Immunity via Sterol Regulatory Element Binding Protein 2 (SREBP2) Transactivation of MicroRNA-92a

Hsien-Da Huang, S. Chien, F. Lin, 2015, Circulation.

Phosphoproteome profiling of the sexually transmitted pathogen Trichomonas vaginalis.

Hsien-Da Huang, Kuo-Yang Huang, Yuan-Ming Yeh, 2013, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

Krüppel-Like Factor 4 Regulation of Cholesterol-25-Hydroxylase and Liver X Receptor Mitigates Atherosclerosis Susceptibility

Hsi-Yuan Huang, Hsien-Da Huang, J. Li, 2017, Circulation.

Evaluation of whole exome sequencing by targeted gene sequencing and Sanger sequencing.

Hsien-Da Huang, Jan-Gowth Chang, K. Yeh, 2017, Clinica chimica acta; international journal of clinical chemistry.

Escherichia Coli CRISPR/CAS System Evolved with Bacteriophage: A Case Report

Hsi-Yuan Huang, S. Shrestha, Hsien-Da Huang, 2018, Biomedical Journal of Scientific & Technical Research.

KLF 4 Regulation of Ch 25 h and LXR Mitigates Atherosclerosis Susceptibility Running

Hsi-Yuan Huang, Hsien-Da Huang, S. Subramaniam, 2017 .

Molecular and Cellular Pathobiology Histone Demethylase RBP 2 Promotes Lung Tumorigenesis and Cancer Metastasis

Hsien-Da Huang, Y. Jeng, F. Lin, 2013 .

Mitral valve repair versus replacement in patients with ischemic mitral regurgitation.

Hsien-Da Huang, S. Hou, Meng-lin Lee, 2018, Journal of thoracic disease.

A probabilistic method to correlate ion pairs with protein thermostability

Jorng-Tzong Horng, Hsien-Da Huang, Li-Cheng Wu, 2004, Applied bioinformatics.

Let-7b is a novel regulator of hepatitis C virus replication

Hsien-Da Huang, N. Sakamoto, C. Tseng, 2012, Cellular and Molecular Life Sciences.

Biomarker Identification through Multiomics Data Analysis of Prostate Cancer Prognostication Using a Deep Learning Model and Similarity Network Fusion

Tzong-Yi Lee, Hsien-Da Huang, J. B. Hsu, 2021, Cancers.

GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes

Hsien-Da Huang, Shinn-Ying Ho, Chi-Dung Yang, 2015, Bioinform..

KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns

Hsien-Da Huang, Tzong-Yi Lee, Ming-Tat Ko, 2007, Nucleic Acids Res..

miRTarBase: a database curates experimentally validated microRNA–target interactions

Chi-Ying F. Huang, Hsien-Da Huang, Chao Liang, 2010, Nucleic Acids Res..

Mechanical stretch induces hair regeneration through the alternative activation of macrophages

Hsien-Da Huang, Chih-Hung Chou, Feng-Mao Lin, 2019, Nature Communications.

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants

Hsien-Da Huang, Tzong-Yi Lee, Chia-Hung Chien, 2015, Nucleic Acids Res..

Functional Analyses of Endometriosis-Related Polymorphisms in the Estrogen Synthesis and Metabolism-Related Genes

Hsien-Da Huang, Yun-Shien Lee, Hsien-Ming Wu, 2012, PloS one.

Hypoxia-responsive miRNAs target argonaute 1 to promote angiogenesis.

Hsien-Da Huang, Feng-Mao Lin, John Y-J Shyy, 2013, The Journal of clinical investigation.

Expanding genotype/phenotype of neuromuscular diseases by comprehensive target capture/NGS

Chih-Hung Chou, Hsien-Da Huang, W. Liang, 2015, Neurology: Genetics.

Compositional and functional variations of oral microbiota associated with the mutational changes in oral cancer.

Hsien-Da Huang, Mu-Kuan Chen, Shun-Fa Yang, 2018, Oral oncology.

Bacterial alterations in salivary microbiota and their association in oral cancer

Hsien-Da Huang, Shinn-Ying Ho, F. Lin, 2017, Scientific Reports.

MethHC: a database of DNA methylation and gene expression in human cancer

Hsien-Da Huang, Yi-Ming Sun, Chih-Hung Chou, 2014, Nucleic Acids Res..

Very long non-coding RNA and human disease

Hsien-Da Huang, Jan-Gowth Chang, Wen-Ling Chan, 2012 .

Detecting LTR structures in human genomic sequences using profile hidden Markov models

Jorng-Tzong Horng, Hsien-Da Huang, Li-Ching Wu, 2009, Expert Syst. Appl..

i-Genome: A database to summarize oligonucleotide data in genomes

Jorng-Tzong Horng, Hsien-Da Huang, Feng-Mao Lin, 2004, BMC Genomics.

Database of repetitive elements in complete genomes and data mining using transcription factor binding sites

Jorng-Tzong Horng, Hsien-Da Huang, Baw-Jhiune Liu, 2003, IEEE Transactions on Information Technology in Biomedicine.

The Repetitive Sequence Database and Mining Putative Regulatory Elements in Gene Promoter Regions

Jorng-Tzong Horng, Hsien-Da Huang, Ming-Hui Jin, 2002, J. Comput. Biol..

Mining putative regulatory elements in gene promoter regions of Saccharomyces cerevisiae

Jorng-Tzong Horng, Hsien-Da Huang, Shir-Ly Huang, 2002, Silico Biol..

Control of matrix stiffness promotes endodermal lineage specification by regulating SMAD2/3 via lncRNA LINC00458

O. Lee, Chih-Hung Chou, Hsien-Da Huang, 2020, Science Advances.

lncRNAMap: A map of putative regulatory functions in the long non-coding transcriptome

Hsien-Da Huang, Wen-Ling Chan, Jan-Gowth Chang, 2014, Comput. Biol. Chem..

CircNet: a database of circular RNAs derived from transcriptome sequencing data

Hsien-Da Huang, Jianrong Li, Sheng-Da Hsu, 2015, Nucleic Acids Res..

Flow-Dependent Regulation of Kruppel-Like Factor 2 Is Mediated by MicroRNA-92a.

Hsien-Da Huang, Yuzhi Zhang, G. Garcı́a-Cardeña, 2011, Circulation.

pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes

Hsien-Da Huang, Wen-Ling Chan, Jan-Gowth Chang, 2013, Database J. Biol. Databases Curation.

Biological Data Warehousing System for Identifying Transcriptional Regulatory Sites From Gene Expressions of Microarray Data

Jorng-Tzong Horng, Hsien-Da Huang, Baw-Jhiune Liu, 2006, IEEE Transactions on Information Technology in Biomedicine.

A data mining method to predict transcriptional regulatory sites based on differentially expressed genes in human genome

Tsung-Shan Tsou, Hsien-Da Huang, Baw-Jhiune Liu, 2003, Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings..

DDX3 Represses Stemness by Epigenetically Modulating Tumor-suppressive miRNAs in Hepatocellular Carcinoma

Chih-Hung Chou, Hsien-Da Huang, Yan-Hwa Wu Lee, 2016, Scientific Reports.

dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications

Hsien-Da Huang, Tzong-Yi Lee, Kai-Yao Huang, 2018, Nucleic Acids Res..

dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins

Hsien-Da Huang, Tzong-Yi Lee, Min-Gang Su, 2015, Nucleic Acids Res..

Dual Effects of Let-7b in the Early Stage of Hepatitis C Virus Infection

Hsien-Da Huang, M. Lai, C. Tseng, 2020, Journal of Virology.

FMM: a web server for metabolic pathway reconstruction and comparative analysis

Hsien-Da Huang, Chih-Hung Chou, Chih-Min Chiu, 2009, Nucleic Acids Res..

the Metastasis Suppressors DAPK and KLF 4 miR-103 / 107 Promote Metastasis of Colorectal Cancer by Targeting

Hsien-Da Huang, F. Lin, Wei-Chi Wang, 2012 .

miRTar: an integrated system for identifying miRNA-target interactions in human

Tzong-Yi Lee, Hsien-Da Huang, J. B. Hsu, 2011, BMC Bioinformatics.

Small Molecule Amiloride Modulates Oncogenic RNA Alternative Splicing to Devitalize Human Cancer Cells

Hsien-Da Huang, Wen-Ling Chan, Jan-Gowth Chang, 2011, PloS one.

A systematic review of microRNA expression profiling studies in human gastric cancer

Hsien-Da Huang, Sirjana Shrestha, Sheng-Da Hsu, 2014, Cancer medicine.

Identifying the combination of genetic factors that determine susceptibility to cervical cancer

Jorng-Tzong Horng, Hsien-Da Huang, Li-Cheng Wu, 2004, Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering.

A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing

Hsien-Da Huang, Tzu-Hao Chang, Chih-Hung Chou, 2013, BMC Genomics.

miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes

Yi-Hsuan Chen, Hsien-Da Huang, Sheng-Da Hsu, 2007, Nucleic Acids Res..

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes

Hsien-Da Huang, Peter F. Stadler, Ivo L. Hofacker, 2005, Nucleic Acids Res..

A genome-wide association study (GWAS) of the personality constructs in CPAI-2 in Taiwanese Hakka populations

Hsien-Da Huang, Yihhsing Liu, Cheng-Tsung Pan, 2023, PloS one.

Kinectin 1 promotes the growth of triple-negative breast cancer via directly co-activating NF-kappaB/p65 and enhancing its transcriptional activity

Hsien-Da Huang, Ni Xie, L. Fu, 2021, Signal Transduction and Targeted Therapy.

Sterol Regulatory Element Binding Protein 2 Activation of NLRP3 Inflammasome in Endothelium Mediates Hemodynamic-Induced Atherosclerosis Susceptibility

Traci L. Marin, Hsien-Da Huang, Wei-Chi Wang, 2013, Circulation.

Identification of novel mutations in endometrial cancer patients by whole-exome sequencing.

Hsien-Da Huang, Jan-Gowth Chang, K. Yeh, 2017, International journal of oncology.

MicroRNA-224 down-regulates Glycine N-methyltransferase gene expression in Hepatocellular Carcinoma

Chih-Hung Chou, Hsien-Da Huang, A. Tsou, 2018, Scientific Reports.

Adipocyte-specific loss of PPARγ attenuates cardiac hypertrophy.

Hsien-Da Huang, Yusu Gu, N. Dalton, 2016, JCI insight.

Bacterial alterations in salivary microbiota and their association in oral cancer

Hsien-Da Huang, Shinn-Ying Ho, F. Lin, 2017, Scientific Reports.

RegPhos: a system to explore the protein kinase–substrate phosphorylation network in humans

Hsien-Da Huang, Tzong-Yi Lee, Justin Bo-Kai Hsu, 2010, Nucleic Acids Res..

CRP represses the CRISPR/Cas system in Escherichia coli: evidence that endogenous CRISPR spacers impede phage P1 replication

Hsi-Yuan Huang, Hsien-Da Huang, C. Tseng, 2014, Molecular microbiology.

Characterization and prediction of mRNA polyadenylation sites in human genes

Jorng-Tzong Horng, Hsien-Da Huang, Baw-Jhiune Liu, 2011, Medical & Biological Engineering & Computing.

RegRNA: an integrated web server for identifying regulatory RNA motifs and elements

Hsien-Da Huang, Chia-Hung Chien, Hsi-Yuan Huang, 2006, Nucleic Acids Res..

Histone demethylase RBP2 promotes lung tumorigenesis and cancer metastasis.

Hsien-Da Huang, Chih-Hung Hsu, Feng-Mao Lin, 2013, Cancer research.

miRTarBase update 2022: an informative resource for experimentally validated miRNA–target interactions

Hsi-Yuan Huang, Yang-Chi-Dung Lin, Jing Li, 2021, Nucleic Acids Res..

Bidirectional cross-kingdom RNAi and fungal uptake of external RNAs confer plant protection

Hsien-Da Huang, Feng-Mao Lin, Hailing Jin, 2016, Nature Plants.

Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing

Hsien-Da Huang, Tzu-Ling Yang, Shun-Long Weng, 2014, Journal of Clinical Bioinformatics.

An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs

Jorng-Tzong Horng, Hsien-Da Huang, Justin Bo-Kai Hsu, 2013, BMC Bioinformatics.

CCN6-mediated MMP-9 activation enhances metastatic potential of human chondrosarcoma

Hsien-Da Huang, Chih-Hsin Tang, Y. Fong, 2018, Cell Death & Disease.

Biogenesis mechanisms of circular RNA can be categorized through feature extraction of a machine learning model

Hsien-Da Huang, Chengyu Liu, Yu-Chen Liu, 2019, Bioinform..

Enterotype-based Analysis of Gut Microbiota along the Conventional Adenoma-Carcinoma Colorectal Cancer Pathway

Chih-Hung Chou, Hsien-Da Huang, Shinn-Ying Ho, 2019, Scientific Reports.

The evolutionary dynamics of tRNA-gene copy number and codon-use in E. coli.

Chih-Hung Chou, Hsien-Da Huang, Michael J. McDonald, 2015, BMC Evolutionary Biology.

N‐Ace: Using solvent accessibility and physicochemical properties to identify protein N‐acetylation sites

Hsien-Da Huang, Tzong-Yi Lee, Justin Bo-Kai Hsu, 2010, J. Comput. Chem..

ProKware: integrated software for presenting protein structural properties in protein tertiary structures

Hsien-Da Huang, Tzong-Yi Lee, Jui-Hung Hung, 2006, Nucleic Acids Res..

An expert system to predict protein thermostability using decision tree

Jorng-Tzong Horng, Hsien-Da Huang, Li-Cheng Wu, 2009, Expert Syst. Appl..

dbPTM: an information repository of protein post-translational modification

Hsien-Da Huang, Tzong-Yi Lee, Tzu-Hao Wang, 2005, Nucleic Acids Res..

KinasePhos 3.0: Redesign and Expansion of the Prediction on Kinase-specific Phosphorylation Sites

Tzong-Yi Lee, Hsien-Da Huang, Shangfu Li, 2021, bioRxiv.

Unraveling regulatory mechanisms of atrial remodeling of mitral regurgitation pigs by gene expression profiling analysis: role of type I angiotensin II receptor antagonist.

Hsien-Da Huang, Feng-Sheng Wang, Tzu-Hao Chang, 2015, Translational research : the journal of laboratory and clinical medicine.

Prediction of small non-coding RNA in bacterial genomes using support vector machines

Jorng-Tzong Horng, Hsien-Da Huang, Baw-Jhiune Liu, 2008, Expert Syst. Appl..

miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression

Hsien-Da Huang, Kuan-Yu Lin, Feng-Mao Lin, 2009, BMC Bioinformatics.

A new method for post Genome-Wide Association Study (GWAS) analysis of colorectal cancer in Taiwan.

Hsien-Da Huang, F. Lin, Chih-Min Chiu, 2013, Gene.

Urokinase-type Plasminogen Activator Resulting from Endometrial Carcinogenesis Enhances Tumor Invasion and Correlates with Poor Outcome of Endometrial Carcinoma Patients

Hsien-Da Huang, K. Kuo, Chi-An Chen, 2015, Scientific Reports.

RNAcentral: an international database of ncRNA sequences

Hsien-Da Huang, Alex Bateman, Janusz M Bujnicki, 2014, Nucleic Acids Res..

Integrated microRNA and mRNA expression profile analysis of tumor-associated macrophages after exposure to single-dose irradiation

Andy Chi-Lung Lee, Wei-Hsiang Kung, Fang-Hsin Chen, 2018, Comput. Biol. Chem..

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications

Hsien-Da Huang, Yu-Ju Chen, Yi-Ju Chen, 2012, Nucleic Acids Res..

Incorporating hidden Markov models for identifying protein kinase‐specific phosphorylation sites

Jorng-Tzong Horng, Hsien-Da Huang, Li-Cheng Wu, 2005, J. Comput. Chem..

ViTa: prediction of host microRNAs targets on viruses

Hsien-Da Huang, Justin Bo-Kai Hsu, Sheng-Da Hsu, 2006, Nucleic Acids Res..

RegPhos 2.0: an updated resource to explore protein kinase–substrate phosphorylation networks in mammals

Hsien-Da Huang, Yu-Ju Chen, Yi-Ju Chen, 2014, Database J. Biol. Databases Curation.

KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites

Jorng-Tzong Horng, Hsien-Da Huang, Tzong-Yi Lee, 2005, Nucleic Acids Res..

Genetic alterations in endometrial cancer by targeted next-generation sequencing.

Hsien-Da Huang, Jan-Gowth Chang, K. Yeh, 2016, Experimental and molecular pathology.

CCN6-mediated MMP-9 activation enhances metastatic potential of human chondrosarcoma

Hsien-Da Huang, Y. Fong, Shih-Wei Wang, 2018, Cell Death & Disease.

Single-Tube Reaction Using Perfluorocarbons: A Prerequisite Step Leading to the Whole-Slide In Situ Technique on Histopathological Slides

Hsien-Da Huang, Yih-Leong Chang, C. Liang, 2016, PloS one.

Circulating microRNAs Associated With Reversible Cerebral Vasoconstriction Syndrome

Chih-Hung Chou, Hsien-Da Huang, C. Juan, 2020, Annals of neurology.

EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou’s PseAAC

Jorng-Tzong Horng, Hsien-Da Huang, Li-Ching Wu, 2013, Journal of Computer-Aided Molecular Design.

Synbiotics Alleviate the Gut Indole Load and Dysbiosis in Chronic Kidney Disease

D. Tarng, Hsien-Da Huang, C. Tseng, 2021, Cells.

Long noncoding RNA TUG1 is downregulated in non-small cell lung cancer and can regulate CELF1 on binding to PRC2

Hsien-Da Huang, Jan-Gowth Chang, Ya-Sian Chang, 2016, BMC Cancer.

Global Analyses of Small Interfering RNAs Derived from Bamboo mosaic virus and Its Associated Satellite RNAs in Different Plants

Hsien-Da Huang, Chi-Ping Cheng, Wei-Chi Wang, 2010, PloS one.

Gene expression profiling of tumor-associated macrophages after exposure to single-dose irradiation

Hsien-Da Huang, Chi-Dung Yang, Yu-Chen Liu, 2017, Comput. Biol. Chem..

Gut microbiome changes in overweight male adults following bowel preparation

Hsien-Da Huang, F. Lin, S. Weng, 2018, BMC Genomics.

YjcC, a c-di-GMP Phosphodiesterase Protein, Regulates the Oxidative Stress Response and Virulence of Klebsiella pneumoniae CG43

Hsi-Yuan Huang, Hsien-Da Huang, Hwei-Ling Peng, 2013, PloS one.

A comprehensive resource for integrating and displaying protein post-translational modifications

Hsien-Da Huang, Tzong-Yi Lee, Justin Bo-Kai Hsu, 2009, BMC Research Notes.

An agent‐based system to discover protein–protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints

Jorng-Tzong Horng, Hsien-Da Huang, Li-Cheng Wu, 2006, J. Comput. Chem..

SpliceInfo : an information repository for the modes of mRNA alternative splicing in human genome

Jorng-Tzong Horng, Hsien-Da Huang, Feng-Mao Lin, 2004 .

dbSNO: a database of cysteine S-nitrosylation

Hsien-Da Huang, Yu-Ju Chen, Yi-Ju Chen, 2012, Bioinform..

PredCRP: predicting and analysing the regulatory roles of CRP from its binding sites in Escherichia coli

Hsi-Yuan Huang, Hsien-Da Huang, Shinn-Ying Ho, 2018, Scientific Reports.

A Three–MicroRNA Signature as a Potential Biomarker for the Early Detection of Oral Cancer

Chih-Hung Chou, Hsien-Da Huang, Wei-Chih Huang, 2018, International journal of molecular sciences.

The effects of actin cytoskeleton perturbation on keratin intermediate filament formation in mesenchymal stem/stromal cells.

O. Lee, Hsien-Da Huang, S. Chien, 2014, Biomaterials.

DNA Methyltransferases Modulate Hepatogenic Lineage Plasticity of Mesenchymal Stromal Cells

O. Lee, Hsien-Da Huang, Wei-Chih Huang, 2017, Stem cell reports.

The activation of directional stem cell motility by green light-emitting diode irradiation.

O. Lee, Hsien-Da Huang, S. Chien, 2013, Biomaterials.

MicroRNA-92a Mediates Endothelial Dysfunction in CKD.

D. Tarng, A. Cheung, Hsien-Da Huang, 2017, Journal of the American Society of Nephrology : JASN.

Detection of discriminative sequence motifs in proteins obtained from prokaryotes grown at various temperatures

Jorng-Tzong Horng, Hsien-Da Huang, Li-Cheng Wu, 2006, J. Comput. Chem..

The evolutionary dynamics of tRNA-gene copy number and codon-use in E. coli.

Chih-Hung Chou, Hsien-Da Huang, Michael J. McDonald, 2015, BMC Evolutionary Biology.

Characterization of the Drug Resistance Profiles of Patients Infected with CRF07_BC Using Phenotypic Assay and Ultra-Deep Pyrosequencing

Chih-Hung Chou, Hsien-Da Huang, S. Oka, 2017, PloS one.

Oral microbial dysbiosis and its performance in predicting oral cancer.

Hsien-Da Huang, Shun-Fa Yang, L. Chang, 2020, Carcinogenesis.

Let-7b is a novel regulator of hepatitis C virus replication

Hsien-Da Huang, N. Sakamoto, C. Tseng, 2012, Cellular and Molecular Life Sciences.

Identifying cancer highly-expressed membrane receptors for targeted drug delivery

Hsien-Da Huang, Tzu-Hao Chang, Kuang-Wen Liao, 2012, Int. J. Bioinform. Res. Appl..

Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis

Hsiao-Chin Hong, Hsien-Da Huang, Wei-Hsiang Lee, 2018, BMC Genomics.

Haptoglobin expression correlates with tumor differentiation and five-year overall survival rate in hepatocellular carcinoma

Chih-Hung Chou, Hsien-Da Huang, Wei-Chih Huang, 2017, PloS one.

Resistin Enhances Monocyte Chemoattractant Protein-1 Production in Human Synovial Fibroblasts and Facilitates Monocyte Migration.

Hsien-Da Huang, Ting-Yi Lin, S. Weng, 2019, Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology.

Plant miRNAs found in human circulating system provide evidences of cross kingdom RNAi

Hsien-Da Huang, Yu-Chen Liu, Wen Liang Chen, 2017, BMC Genomics.

Extension of C. elegans lifespan using the ·NO-delivery dinitrosyl iron complexes

Hsiao-Chin Hong, Chih-Hung Chou, Hsien-Da Huang, 2018, JBIC Journal of Biological Inorganic Chemistry.

Primer design for multiplex PCR using a genetic algorithm

Jorng-Tzong Horng, Hsien-Da Huang, Feng-Mao Lin, 2003, GECCO '05.

Transcriptome sequencing based annotation and homologous evidence based scaffolding of Anguilla japonica draft genome

Chung-Der Hsiao, Hsien-Da Huang, Chih-Hung Chou, 2016, BMC Genomics.

A novel role of CPEB 3 in regulating EGFR gene transcription via association with Stat 5 b in neurons

Yi-shuian Huang, Hsi-Yuan Huang, Hsien-Da Huang, 2010 .

Biclustering of transcriptome sequencing data reveals human tissue-specific circular RNAs

Hsien-Da Huang, Jianrong Li, Chun-Chi Liu, 2018, BMC Genomics.

Identifying Discriminative Amino Acids Within the Hemagglutinin of Human Influenza A H5N1 Virus Using a Decision Tree

Jorng-Tzong Horng, Hsien-Da Huang, Li-Ching Wu, 2008, IEEE Transactions on Information Technology in Biomedicine.

ProSplicer: a database of putative alternative splicing information derived from protein, mRNA and expressed sequence tag sequence data

Jorng-Tzong Horng, Hsien-Da Huang, Baw-Jhiune Liu, 2003, Genome Biology.

A Human DNA Methylation Site Predictor Based on SVM

Jorng-Tzong Horng, Hsien-Da Huang, Baw-Jhiune Liu, 2009, 2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering.

Identifying transcriptional regulatory sites in the human genome using an integrated computation

Jorng-Tzong Horng, Hsien-Da Huang, Shir-Ly Huang, 2004, 7th International Symposium on Parallel Architectures, Algorithms and Networks, 2004. Proceedings..

A Computational Approach to Discover Differential Cooperation of Regulartory Sites in Functionally Related Genes in Yeast Genome

Tsung-Shan Tsou, Jorng-Tzong Horng, Hsien-Da Huang, 2004, J. Inf. Sci. Eng..

i-Genome: A database to summarize oligonucleotide data in genomes

Hsien-Da Huang, Jorng-Tzong Horng, F. Lin, 2004, BMC Genomics.

RNALogo: a new approach to display structural RNA alignment

Jorng-Tzong Horng, Hsien-Da Huang, Tzu-Hao Chang, 2008, Nucleic Acids Res..

PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms

Timothy H. Wu, Richie Ruei-Chi Gan, Hsien-Da Huang, 2016, BMC Bioinformatics.

RINGdb: An integrated database for G protein-coupled receptors and regulators of G protein signaling

Jorng-Tzong Horng, Hsien-Da Huang, Li-Cheng Wu, 2006, BMC Genomics.

Long noncoding RNA TUG1 is downregulated in non-small cell lung cancer and can regulate CELF1 on binding to PRC2

Hsien-Da Huang, Jan-Gowth Chang, Ya-Sian Chang, 2016, BMC Cancer.

MicroRNA‐122, a tumor suppressor microRNA that regulates intrahepatic metastasis of hepatocellular carcinoma

Hsien-Da Huang, M. Hsiao, Y. Chau, 2009, Hepatology.

microRNA: a master regulator of cellular processes for bioengineering systems.

Hsien-Da Huang, S. Chien, J. Shyy, 2010, Annual review of biomedical engineering.

PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups

Tzong-Yi Lee, Hsien-Da Huang, W. Chang, 2008, BMC Genomics.

Structured non-coding RNAs Prediction , Comparison , Annotation

D. Gautheret, Hsien-Da Huang, Stadler, 2009 .

Oxidative Stress Activates Endothelial Innate Immunity via Sterol Regulatory Element Binding Protein 2 (SREBP2) Transactivation of MicroRNA-92a

Hsien-Da Huang, S. Chien, F. Lin, 2015, Circulation.

SpliceInfo: an information repository for mRNA alternative splicing in human genome

Jorng-Tzong Horng, Hsien-Da Huang, Feng-Mao Lin, 2004, Nucleic Acids Res..

Exploring Regulatory Mechanisms of Atrial Myocyte Hypertrophy of Mitral Regurgitation through Gene Expression Profiling Analysis: Role of NFAT in Cardiac Hypertrophy

Hsien-Da Huang, Tzu-Hao Chang, Yu-Sheng Lin, 2016, PloS one.

Circulating miR-148b-3p and miR-409-3p as biomarkers for heart failure in patients with mitral regurgitation.

Hsien-Da Huang, Kuo-Li Pan, Hsien-Da Huang, 2016, International journal of cardiology.

Identification of novel mutations in endometrial cancer patients by whole-exome sequencing.

Hsien-Da Huang, Jan-Gowth Chang, K. Yeh, 2017, International journal of oncology.