Feng Li

发表

Comprehensive characterization of lncRNA-mRNA related ceRNA network across 12 major cancers

Xia Li, Yunpeng Zhang, Yanjun Xu, 2016, Oncotarget.

Discovering Rare Genes Contributing to Cancer Stemness and Invasive Potential by GBM Single-Cell Transcriptional Analysis

Huating Yuan, Min Yan, Gaoming Liao, 2019, Cancers.

Predicting the Functions of Long Noncoding RNAs Using RNA-Seq Based on Bayesian Network

Xia Li, Yun Xiao, Feng Li, 2015, BioMed research international.

'Traffic light rules': Chromatin states direct miRNA-mediated network motifs running by integrating epigenome and regulatome.

Xia Li, Guanxiong Zhang, Tingting Zhao, 2016, Biochimica et biophysica acta.

Gene Perturbation Atlas (GPA): a single-gene perturbation repository for characterizing functional mechanisms of coding and non-coding genes

Xia Li, Guanxiong Zhang, Yun Xiao, 2015, Scientific Reports.

Crosstalk of dynamic functional modules in lung development of rhesus macaques.

Wei Jiang, Yun Xiao, Feng Li, 2016, Molecular bioSystems.

Dissecting dysfunctional crosstalk pathways regulated by miRNAs during glioma progression

Xia Li, Yunpeng Zhang, Yanjun Xu, 2016, Oncotarget.

Spatiotemporal-specific lncRNAs in the brain, colon, liver and lung of macaque during development.

Xia Li, Wei Jiang, Yun Xiao, 2015, Molecular bioSystems.

Systematic Identification of Core Transcription Factors Mediating Dysregulated Links Bridging Inflammatory Bowel Diseases and Colorectal Cancer

Xia Li, Yun Xiao, Teng-Rui Huang, 2013, PloS one.

Comprehensive analysis of microglia gene and subpathway signatures for glioma prognosis and drug screening: linking microglia to glioma

Yunpeng Zhang, Yanjun Xu, Feng Li, 2022, Journal of translational medicine.

Comprehensive analysis of ncRNA involvement in brain microglia immunology.

Yunpeng Zhang, Yanjun Xu, Feng Li, 2022, Clinical immunology.

Identifying and characterizing drug sensitivity-related lncRNA-TF-gene regulatory triplets

Yunpeng Zhang, Yanjun Xu, Feng Li, 2022, Briefings Bioinform..

Systematically characterizing dysfunctional long intergenic non-coding RNAs in multiple brain regions of major psychosis

Tingting Zhao, Yun Xiao, Feng Li, 2016, Oncotarget.

TIP: A Web Server for Resolving Tumor Immunophenotype Profiling.

Xia Li, Huating Yuan, Min Yan, 2018, Cancer research.

CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data

Peng Wang, Yunpeng Zhang, Feng Li, 2022, Nucleic Acids Res..

IndividualizedPath: identifying genetic alterations contributing to the dysfunctional pathways in glioblastoma individuals.

Li Wang, Yun Xiao, Lin Pang, 2014, Molecular bioSystems.

LnChrom: a resource of experimentally validated lncRNA–chromatin interactions in human and mouse

Xia Li, Jian Huang, Yan Zhang, 2018, Database J. Biol. Databases Curation.

CellMarker: a manually curated resource of cell markers in human and mouse

Feng Li, Tingting Zhao, Jing Bai, 2018, Nucleic Acids Res..

A global map for dissecting phenotypic variants in human lincRNAs

Peng Wang, Ronghong Li, Jingrun Ye, 2013, European Journal of Human Genetics.

LncSubpathway: a novel approach for identifying dysfunctional subpathways associated with risk lncRNAs by integrating lncRNA and mRNA expression profiles and pathway topologies

Haixiu Yang, Desi Shang, Tan Wu, 2017, Oncotarget.

Comparison of long non-coding RNAs, microRNAs and messenger RNAs involved in initiation and progression of esophageal squamous cell carcinoma

Xia Li, Yun Xiao, Feng Li, 2014, Molecular medicine reports.

MicrogliaST: a web server for microglia spatiotemportal pattern analysis in normal and disordered brains

Feng Li, Chunlong Zhang, Yingqi Xu, 2022, bioRxiv.

Identifying subpathway signatures for individualized anticancer drug response by integrating multi-omics data

Desi Shang, Yanjun Xu, Yingqi Xu, 2019, Journal of Translational Medicine.

Identifying the crosstalk of dysfunctional pathways mediated by lncRNAs in breast cancer subtypes.

Li Wang, Yun Xiao, Jing Li, 2016, Molecular bioSystems.

Dissecting immune cell stat regulation network reveals biomarkers to predict ICB therapy responders in melanoma

Yunpeng Zhang, Yanjun Xu, Feng Li, 2020, Journal of translational medicine.

RNAactDrug: a comprehensive database of RNAs associated with drug sensitivity from multi-omics data

Jing Xiao, Feng Li, Haixiu Yang, 2019, Briefings Bioinform..

Identification and comprehensive characterization of lncRNAs with copy number variations and their driving transcriptional perturbed subpathways reveal functional significance for cancer

Feng Li, Haixiu Yang, Jingwen Wang, 2019, Briefings Bioinform..

MPINet: Metabolite Pathway Identification via Coupling of Global Metabolite Network Structure and Metabolomic Profile

Qianlan Yao, Haixiu Yang, Desi Shang, 2014, BioMed research international.

Integrating Multi-Omics for Uncovering the Architecture of Cross-Talking Pathways in Breast Cancer

Li Wang, Yun Xiao, Yanyan Ping, 2014, PloS one.

Identifying individualized risk subpathways reveals pan-cancer molecular classification based on multi-omics data

Yunpeng Zhang, Yanjun Xu, Feng Li, 2022, Computational and structural biotechnology journal.

Supplementary Table 7.

Feng Li, Jing Hu, Xia Li, 2014 .

A novel method to identify and characterize personalized functional driver lncRNAs in cancer samples.

Yunpeng Zhang, Yanjun Xu, Feng Li, 2023, Computational and structural biotechnology journal.

A comprehensive overview of oncogenic pathways in human cancer

Jing Xiao, Yingqi Xu, Jian Huang, 2019, Briefings Bioinform..

Identifying subpathway signatures for individualized anticancer drug response by integrating multi-omics data

Yunpeng Zhang, Yanjun Xu, Feng Li, 2019, Journal of Translational Medicine.

BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases

Fei Su, Xia Li, Feng Li, 2017, Database J. Biol. Databases Curation.

CiTSA: a comprehensive platform provides experimentally supported signatures of cancer immunotherapy and analysis tools based on bulk and scRNA-seq data

Yunpeng Zhang, Yanjun Xu, Feng Li, 2023, Cancer Immunology, Immunotherapy.

Supplementary Table 11.

Feng Li, Jing Hu, Xia Li, 2014 .

Identifying the crosstalk of dysfunctional pathways mediated by lncRNAs in breast cancer subtypes.

Xia Li, Yun Xiao, Feng Li, 2016, Molecular bioSystems.

Comprehensive analyses of brain cell communications based on multiple scRNA‐seq and snRNA‐seq datasets for revealing novel mechanism in neurodegenerative diseases

Yunpeng Zhang, Yanjun Xu, Feng Li, 2023, CNS neuroscience & therapeutics.