P. Stojanov

发表

Mutational heterogeneity in cancer and the search for new cancer-associated genes

Steven A. Roberts, T. Fennell, A. Sivachenko, 2013 .

Discovery and saturation analysis of cancer genes across 21 tumor types

S. Gabriel, E. Lander, T. Golub, 2014, Nature.

Comprehensive molecular characterization of clear cell renal cell carcinoma

Steven J. M. Jones, Benjamin J. Raphael, Evan O. Paull, 2013, Nature.

The Mutational Landscape of Head and Neck Squamous Cell Carcinoma

A. McKenna, A. Sivachenko, K. Cibulskis, 2011, Science.

Comprehensive molecular characterization of human colon and rectal cancer

Steven J. M. Jones, Joshua M. Stuart, Brian D. O’Connor, 2012, Nature.

Comprehensive genomic characterization of squamous cell lung cancers

Steven J. M. Jones, Joshua M. Stuart, Brian D. O’Connor, 2012, Nature.

Mapping the Hallmarks of Lung Adenocarcinoma with Massively Parallel Sequencing

Angela N. Brooks, Trevor J Pugh, A. Sivachenko, 2012, Cell.

Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair

P. Hanawalt, G. Getz, D. Wheeler, 2016, Cell.

An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers

Steven A. Roberts, Sara A. Grimm, G. Getz, 2013, Nature Genetics.

Comprehensive molecular portraits of human breast tumors

Steven J. M. Jones, Andrew H. Beck, Joshua F. McMichael, 2012, Nature.

Whole-exome sequencing and clinical interpretation of FFPE tumor samples to guide precision cancer medicine

Adam Kiezun, Petar Stojanov, Kristian Cibulskis, 2013, Nature Medicine.

Mutational heterogeneity in cancer and the search for new cancer genes

Steven A. Roberts, David I Heiman, A. McKenna, 2014 .

Comprehensive molecular characterization of urothelial bladder carcinoma

Steven J. M. Jones, Evan O. Paull, Joshua M. Stuart, 2014, Nature.

Integrated Genomic Characterization of Papillary Thyroid Carcinoma

Steven J. M. Jones, Benjamin J. Raphael, Evan O. Paull, 2014, Cell.

Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia

A. McKenna, A. Sivachenko, K. Cibulskis, 2012, Cell.

Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer

A. Sivachenko, K. Cibulskis, S. Gabriel, 2012, Nature Genetics.

Recurrent and functional regulatory mutations in breast cancer

Trevor J Pugh, J. Grimsby, S. Gabriel, 2017, Nature.

Exome and whole genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity

A. McKenna, A. Sivachenko, K. Cibulskis, 2013, Nature Genetics.

Comprehensive genomic characterization of head and neck squamous cell carcinomas

Steven J. M. Jones, Joshua M. Stuart, Thomas M. Harris, 2015, Nature.

SF3B1 and other novel cancer genes in chronic lymphocytic leukemia.

A. Sivachenko, K. Cibulskis, S. Gabriel, 2011, The New England journal of medicine.

Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair

J. Stamatoyannopoulos, G. Getz, M. Lawrence, 2013, Nature Biotechnology.

Melanoma genome sequencing reveals frequent PREX2 mutations

T. Fennell, A. Sivachenko, K. Cibulskis, 2012, Nature.

Integrative and comparative genomic analysis of lung squamous cell carcinomas in East Asian patients.

Yong Soo Choi, A. McKenna, A. Sivachenko, 2014, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

Whole-exome sequencing and clinical interpretation of formalin-fixed , paraffin-embedded tumor samples to guide precision cancer medicine

Dennis C. Friedrich, A. McKenna, A. Sivachenko, 2014 .

Comprehensive molecular characterization of gastric adenocarcinoma

Steven J. M. Jones, Benjamin J. Raphael, Mark D. M. Leiserson, 2014, Nature.

Widespread genetic heterogeneity in multiple myeloma: implications for targeted therapy.

A. McKenna, K. Cibulskis, T. Golub, 2014, Cancer cell.

Integrative and Comparative Genomic Analysis of HPV-Positive and HPV-Negative Head and Neck Squamous Cell Carcinomas

Petar Stojanov, Kevin P. White, Christopher D. Brown, 2014, Clinical Cancer Research.

MEDULLOBLASTOMA EXOME SEQUENCING UNCOVERS SUBTYPE-SPECIFIC SOMATIC MUTATIONS

Jill P. Mesirov, Petar Stojanov, Scott L. Pomeroy, 2012, Nature.

Reconstructing cancer drug response networks using multitask learning

Ziv Bar-Joseph, Matthew Ruffalo, Petar Stojanov, 2017, BMC Systems Biology.

MYELOID NEOPLASIA TET2 mutations predict response to hypomethylating agents in myelodysplastic syndrome patients

D. Neuberg, B. Ebert, P. Stojanov, 2014 .

Using Multitask Learning to Predict Signaling and Regulatory Pathways

Krishna Pillutla, P. Stojanov, R. Varma, 2014 .

Ex vivo culture of circulating breast tumor cells for individualized testing of drug susceptibility

Sridhar Ramaswamy, Petar Stojanov, Mehmet Toner, 2014, Science.

O-024 Next-generation sequencing of 213 MDS patient samples identifies mutation profiles associated with response to hypomethylating agents and overall survival

K. Cibulskis, D. Neuberg, B. Ebert, 2013 .

Partial Identifiability for Domain Adaptation

Shaoan Xie, P. Stojanov, Lingjing Kong, 2023, ArXiv.

Integrated genomic characterization of endometrial carcinoma

Steven J. M. Jones, Joshua M. Stuart, Richard A. Moore, 2013, Nature.

SF 3 B 1 and Other Novel Cancer Genes in Chronic Lymphocytic Leukemia

Eric S. Lander, Petar Stojanov, Kristian Cibulskis, 2011 .

The genomic landscape of pediatric Ewing sarcoma.

A. McKenna, A. Sivachenko, K. Cibulskis, 2014, Cancer discovery.

Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing

Eric S. Lander, Petar Stojanov, Todd R. Golub, 2012, Proceedings of the National Academy of Sciences.

Paired Exome Analysis of Barrett’s Esophagus and Adenocarcinoma

A. McKenna, S. Gabriel, E. Lander, 2015, Nature Genetics.

Unpaired data empowers association tests

Peng Liu, Petar Stojanov, Kayhan Batmanghelich, 2019, bioRxiv.

Comprehensive molecular characterization of clear cell renal cell carcinoma

Steven J. M. Jones, Eric S. Lander, Benjamin J. Raphael, 2013, Nature.

TET2 mutations predict response to hypomethylating agents in myelodysplastic syndrome patients.

D. Neuberg, B. Ebert, P. Stojanov, 2014, Blood.

Low-Dimensional Density Ratio Estimation for Covariate Shift Correction

Jaime G. Carbonell, Mingming Gong, Petar Stojanov, 2019, AISTATS.

Somatic mutations predict poor outcome in patients with myelodysplastic syndrome after hematopoietic stem-cell transplantation.

D. Neuberg, B. Ebert, P. Stojanov, 2014, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

Domain Adaptation with Invariant Representation Learning: What Transformations to Learn?

J. Carbonell, Mingming Gong, P. Stojanov, 2021, NeurIPS.

Domain Adaptation As a Problem of Inference on Graphical Models pdf

Kun Zhang, Petar Stojanov, Clark Glymour, 2020, NeurIPS.

Data-Driven Approach to Multiple-Source Domain Adaptation

Jaime G. Carbonell, Mingming Gong, Petar Stojanov, 2019, AISTATS.

Somatic mutation as a mechanism of Wnt/β-catenin pathway activation in CLL.

Petar Stojanov, Aviv Regev, Nir Hacohen, 2012, Blood.

The Mutational Landscape of Diffuse Large B Cell Lymphoma

T. Golub, J. Cerhan, C. Sougnez, 2011 .

Reconstructing a Genotype-Phenotype Map In Chronic Lymphocytic Leukemia

D. Pe’er, N. Hacohen, C. Sougnez, 2013 .

Detection of Recurrent Mutations by Pooled Targeted Next-Generation Sequencing in MDS Patients Prior to Treatment with Hypomethylating Agents or Stem Cell Transplantation

K. Cibulskis, D. Neuberg, B. Ebert, 2012 .

Partial disentanglement for domain adaptation

Shaoan Xie, P. Stojanov, Lingjing Kong, 2022, ICML.

Mutational heterogeneity in cancer and the search for new cancer genes

David I Heiman, A. McKenna, T. Fennell, 2013, Nature.

Characterization of HPV and host genome interactions in primary head and neck cancers

Chandra Sekhar Pedamallu, Angeliki Pantazi, Joshua M. Stuart, 2014, Proceedings of the National Academy of Sciences.

Mutational heterogeneity in cancer and the search for new cancer genes

Trevor J Pugh, David I Heiman, A. McKenna, 2014 .

The Cancer Genome Atlas Pan-Cancer analysis project

Joshua F. McMichael, James M. Eldred, Martin L. Miller, 2013 .

Functional Somatic and Germline Variants in the NF-κB Pathway in Chronic Lymphocytic Leukemia

K. Cibulskis, C. Sougnez, M. Lawrence, 2012 .

Comprehensive genomic characterization of squamous cell lung cancers

Joshua M. Stuart, Brian D. O’Connor, Charles J. Vaske, 2012, Nature.

Whole-exome sequencing and clinical interpretation of FFPE tumor samples to guide precision cancer medicine

Dennis C. Friedrich, A. McKenna, A. Sivachenko, 2013, Nature Medicine.

Melanoma genome sequencing reveals frequent PREX2 mutations

Trevor J Pugh, T. Fennell, A. Sivachenko, 2012, Nature.

Mutational heterogeneity in cancer and the search for new cancer genes

Trevor J Pugh, David I Heiman, T. Fennell, 2014 .

Integrated genomic characterization of endometrial carcinoma

Joshua M. Stuart, Richard A. Moore, Joelle M. Kalicki-Veizer, 2013, Nature.

The Mutational Landscape of Head and Neck Squamous Cell Carcinoma

A. McKenna, A. Sivachenko, K. Cibulskis, 2011, Science.

Integrative and Comparative Genomic Analysis of HPV-Positive and HPV-Negative Head and Neck Squamous Cell Carcinomas

Christopher D. Brown, Trevor J Pugh, G. Getz, 2014, Clinical Cancer Research.

Domain Adaptation As a Problem of Inference on Graphical Models

C. Glymour, Mingming Gong, Kun Zhang, 2020, NeurIPS.

Comprehensive molecular characterization of urothelial bladder carcinoma

Evan O. Paull, Joshua M. Stuart, Richard A. Moore, 2014, Nature.

Somatic mutation as a mechanism of Wnt/β-catenin pathway activation in CLL.

N. Hacohen, A. Regev, E. Lander, 2012, Blood.

Supplementary Materials For: "Domain Adaptation with Invariant Representation Learning: What Transformations to Learn?"

J. Carbonell, Mingming Gong, P. Stojanov, 2021 .

Gene Regulatory Network Inference in the Presence of Dropouts: a Causal View

P. Stojanov, Ignavier Ng, Haoyue Dai, 2024, ArXiv.