M. Rehmsmeier

发表

Fast and effective prediction of microRNA/target duplexes.

R. Giegerich, M. Rehmsmeier, Peter Steffen, 2004, RNA.

Robust pathway enrichment with de novo KeyPathwayMiner

H. Ditzel, M. Rehmsmeier, J. Baumbach, 2016 .

Robust de novo pathway enrichment with KeyPathwayMiner 5

H. Ditzel, M. Rehmsmeier, J. Baumbach, 2016, F1000Research.

Complete probabilistic analysis of RNA shapes

R. Giegerich, M. Rehmsmeier, B. Voß, 2006, BMC Biology.

Comprehensive analysis of high-throughput screens with HiTSeekR

M. Rehmsmeier, J. Baumbach, Q. Tan, 2016, Nucleic acids research.

Evolutionary Plasticity of Polycomb/Trithorax Response Elements in Drosophila Species

R. Paro, M. Rehmsmeier, L. Ringrose, 2008, PLoS biology.

Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana

Marc Rehmsmeier, M. Rehmsmeier, T. Merkle, 2009, Nucleic acids research.

Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3

M. Rehmsmeier, Bjørn André Bredesen-Aa, 2022, PloS one.

University of Southern Denmark Robust de novo pathway enrichment with KeyPathwayMiner

H. Ditzel, M. Rehmsmeier, J. Baumbach, 2016 .

A Computational Approach to Developing Mathematical Models of Polyploid Meiosis

M. Rehmsmeier, 2013, Genetics.

Phylogeny meets sequence search

Martin Vingron, Marc Rehmsmeier, M. Vingron, 1999, German Conference on Bioinformatics.

A functional screen implicates microRNA-138-dependent regulation of the depalmitoylation enzyme APT1 in dendritic spine morphogenesis

M. Greenberg, A. Draguhn, M. Rehmsmeier, 2009, Nature Cell Biology.

The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets

Takaya Saito, Marc Rehmsmeier, M. Rehmsmeier, 2015, PloS one.

Sequence Database Search Using Jumping Alignments

R. Spang, J. Stoye, M. Rehmsmeier, 2000, ISMB.

Polyploidization increases meiotic recombination frequency in Arabidopsis

Marc Rehmsmeier, M. Rehmsmeier, W. Fang, 2011, BMC Biology.

Phase4: Automatic Evaluation of Database Search Methods

Marc Rehmsmeier, M. Rehmsmeier, Marc Rehmsmeier, 2002, Briefings Bioinform..

Phylogenetic information improves homology detection

M Vingron, M. Vingron, M. Rehmsmeier, 2001, Proteins.

RNAhybrid: microRNA target prediction easy, fast and flexible

Jan Krüger, Marc Rehmsmeier, M. Rehmsmeier, 2006, Nucleic Acids Res..

Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster.

Renato Paro, Marc Rehmsmeier, Leonie Ringrose, 2003, Developmental cell.

A Novel Approach to Remote Homology Detection: Jumping Alignments

Jens Stoye, Rainer Spang, Marc Rehmsmeier, 2002, J. Comput. Biol..

Non-symmetric score matrices and the detection of homologous transmembrane proteins

Sven Rahmann, Tobias Müller, Marc Rehmsmeier, 2001, ISMB.

DNA sequence models of genome-wide Drosophila melanogaster Polycomb binding sites improve generalization to independent Polycomb Response Elements

M. Rehmsmeier, B. Bredesen, Marc Rehmsmeier, 2019, Nucleic acids research.

Precrec: fast and accurate precision–recall and ROC curve calculations in R

Takaya Saito, Marc Rehmsmeier, M. Rehmsmeier, 2016, Bioinform..

Comparative homology agreement search: an effective combination of homology-search methods.

Georg Fuellen, Andreas Dress, Marc Rehmsmeier, 2004, Proceedings of the National Academy of Sciences of the United States of America.

RNAshapes: an integrated RNA analysis package based on abstract shapes.

Robert Giegerich, Peter Steffen, Björn Voß, 2006, Bioinformatics.

Abstract shapes of RNA.

Robert Giegerich, Marc Rehmsmeier, R. Giegerich, 2004, Nucleic acids research.

Prediction and Visualization of Structural Switches in RNA

Robert Giegerich, Dirk Haase, Marc Rehmsmeier, 1998, Pacific Symposium on Biocomputing.

jPREdictor: a versatile tool for the prediction of cis-regulatory elements

Thomas Fiedler, Marc Rehmsmeier, M. Rehmsmeier, 2006, Nucleic Acids Res..

MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts

M. Rehmsmeier, A. Alemany, S. Schvartzman, 2022, BMC Bioinformatics.

MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts

Marc Rehmsmeier, Andrea Hita, Gilles Brocart, 2022, BMC Bioinformatics.

High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Arabidopsis Endosperm

M. Rehmsmeier, M. Nordborg, C. Beisel, 2011, PLoS genetics.

Beyond Mfold: Recent advances in RNA bioinformatics

Robert Giegerich, Matthias Höchsmann, Marc Rehmsmeier, 2006, Journal of Biotechnology.

Computational Identification of Polycomb/Trithorax Response Elements

M. Rehmsmeier, Marc Rehmsmeier, 2017 .

Automatic clustering of large sequence databases

Martin Vingron, Pierre Nicodème, Antje Krause, 1998, German Conference on Bioinformatics.

mkESA: enhanced suffix array construction tool

Robert Giegerich, Robert Homann, David Fleer, 2009, Bioinform..