John K. Kim

发表

Functional Genomic Analysis of RNA Interference in C. elegans

Harrison W. Gabel, A. Pasquinelli, G. Ruvkun, 2005, Science.

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

Raymond K. Auerbach, Kevin Y. Yip, Stefan R. Henz, 2010, Science.

Computational and experimental identification of C. elegans microRNAs.

G. Church, B. Reinhart, G. Ruvkun, 2003, Molecular cell.

The Landscape of C. elegans 3′UTRs

Sebastian D. Mackowiak, Emily K. Mis, F. Piano, 2010, Science.

A kinesin Klp10A mediates cell cycle-dependent shuttling of Piwi between nucleus and nuage

John K. Kim, S. Jacobsen, S. Feng, 2018, bioRxiv.

High-resolution profiling and discovery of planarian small RNAs

Martin Hirst, Nikolaus Rajewsky, Marco Marra, 2009, Proceedings of the National Academy of Sciences.

Somatic misexpression of germline P granules and enhanced RNA interference in retinoblastoma pathway mutants

Harrison W. Gabel, G. Ruvkun, C. Mello, 2005, Nature.

MORC Family ATPases Required for Heterochromatin Condensation and Gene Silencing

Christopher J. Hale, M. Pellegrini, Shawn Cokus, 2012, Science.

The full-length transcriptome of C. elegans using direct RNA sequencing

James Taylor, John K. Kim, W. Timp, 2019, bioRxiv.

Driving glioblastoma growth by alternative polyadenylation

John K. Kim, T. Han, Ting Han, 2014, Cell Research.

Identification of small RNA pathway genes using patterns of phylogenetic conservation and divergence

Or Zuk, Gary Ruvkun, Brad Chapman, 2012, Nature.

piRNAs and siRNAs collaborate in Caenorhabditis elegans genome defense

John K. Kim, M. Freeberg, A. Billi, 2012, Genome Biology.

Identification of many microRNAs that copurify with polyribosomes in mammalian neurons

Gary Ruvkun, George M. Church, Kenneth S. Kosik, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae

Yu-Cheng T. Yang, Andy T. Kong, J. Yates, 2013, Genome Biology.

LARP1 functions as a molecular switch for mTORC1-mediated translation of an essential class of mRNAs

John K. Kim, K. Inoki, T. Han, 2017, eLife.

The full-length transcriptome of C. elegans using direct RNA sequencing.

James Taylor, John K. Kim, W. Timp, 2020, Genome research.

RNA promotes phase separation of glycolysis enzymes into yeast G bodies in hypoxia

J. Yates, John K. Kim, T. Han, 2019, bioRxiv.

ztf-16 is a novel heterochronic modulator that opposes adult cell fate in dauer and continuous life histories in Caenorhabditis elegans

A. Rougvie, John K. Kim, S. Flibotte, 2022, bioRxiv.

Feedback between a retinoid-related nuclear receptor and the let-7 microRNAs controls the pace and number of molting cycles in C. elegans

John K. Kim, A. Frand, Ruhi Patel, 2022, bioRxiv.

The Gene-Silencing Protein MORC-1 Topologically Entraps DNA and Forms Multimeric Assemblies to Cause DNA Compaction.

A. Burlingame, John K. Kim, S. Jacobsen, 2019, Molecular cell.

The Gene-Silencing Prote in MORC-1 Topologically Entraps DNA and Forms Multimeric Assemblies to Cause DNA Compaction Graphical

A. Burlingame, John K. Kim, S. Jacobsen, 2022 .

Glycolytic Enzymes Coale sce in G Bodies under Hypoxic Stress Graphical Abstract Highlights

J. Yates, John K. Kim, D. Klionsky, 2022 .

FUS Regulates Activity of MicroRNA-Mediated Gene Silencing.

John K. Kim, L. Joshua-Tor, S. Ong, 2018, Molecular cell.

miRISC Composition Determines Target Fates in Time and Space.

John K. Kim, Himani Galagali, 2018, Developmental cell.

Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Bioinformatic Analysis.

John K. Kim, M. Freeberg, 2016, Methods in molecular biology.

Drosophila Males Use 5′-to-3′ Phased Biogenesis to Make Stellate-silencing piRNAs that Lack Homology to Maternally Deposited piRNA Guides

A. Aravin, G. Bell, John K. Kim, 2022, bioRxiv.

Multigenerational Regulation of the Caenorhabditis elegans Chromatin Landscape by Germline Small RNAs.

John K. Kim, Natasha E Weiser, 2019, Annual review of genetics.

Identification of small RNA pathway genes using patterns of phylogenetic conservation and divergence

Harrison W. Gabel, G. Ruvkun, Y. Tabach, 2012, Nature.

Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress.

J. Yates, John K. Kim, D. Klionsky, 2017, Cell reports.

Endogenous RNAi pathways in C. elegans.

John K. Kim, S. Fischer, A. Billi, 2014, WormBook : the online review of C. elegans biology.

The Caenorhabditis elegans HEN1 Ortholog, HENN-1, Methylates and Stabilizes Select Subclasses of Germline Small RNAs

John K. Kim, S. Mitani, Vishal Khivansara, 2012, PLoS genetics.

26G endo-siRNAs regulate spermatogenic and zygotic gene expression in Caenorhabditis elegans

Diana S Chu, T. Harkins, J. Thierry-Mieg, 2009, Proceedings of the National Academy of Sciences.

SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in C. elegans

M. Schatz, J. Yates, John K. Kim, 2020, bioRxiv.

A Conserved Upstream Motif Orchestrates Autonomous, Germline-Enriched Expression of Caenorhabditis elegans piRNAs

John K. Kim, Vishal Khivansara, S. Chun, 2013, PLoS genetics.

The multifaceted roles of microRNAs in differentiation.

John K. Kim, Himani Galagali, 2020, Current opinion in cell biology.

MORC-1 Integrates Nuclear RNAi and Transgenerational Chromatin Architecture to Promote Germline Immortality.

Kristen C. Brown, John K. Kim, S. Jacobsen, 2017, Developmental cell.

Casein kinase II promotes target silencing by miRISC through direct phosphorylation of the DEAD-box RNA helicase CGH-1

J. Yates, John K. Kim, Vishal Khivansara, 2015, Proceedings of the National Academy of Sciences.

Context-dependent modulation of Pol II CTD phosphatase SSUP-72 regulates alternative polyadenylation in neuronal development

John K. Kim, Xiang-Dong Fu, Vishal Khivansara, 2015, Genes & development.

Article Transcriptional Regulation by Pho23 Modulates the Frequency of Autophagosome Formation

John K. Kim, D. Klionsky, Dingxuan He, 2022 .

modENCODE Project Genome by the Caenorhabditis elegans Integrative Analysis of the

Raymond K. Auerbach, Kevin Y. Yip, Stefan R. Henz, 2011 .

Small RNA pathway genes identified by patterns of phylogenetic conservation and divergence

Harrison W. Gabel, G. Ruvkun, Y. Tabach, 2012, Nature.

Compartmentalization and metabolic regulation of glycolysis.

John K. Kim, Gregory G. Fuller, 2021, Journal of cell science.

Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Experimental Procedures.

John K. Kim, Ting Han, 2016, Methods in molecular biology.

The MicroRNA miR-1 Regulates a MEF-2-Dependent Retrograde Signal at Neuromuscular Junctions

Annie L. Conery, Katherine L. Thompson-Peer, G. Ruvkun, 2008, Cell.

daf-16/FOXO blocks adult cell fate in Caenorhabditis elegans dauer larvae via lin-41/TRIM71

John K. Kim, Margaret R. Starostik, Amelia F. Alessi, 2021, bioRxiv.

Small Rna Pathway Genes Identified by Patterns of Phylogenetic Conservation and Divergence Hhs Public Access Methods Summary Supplementary Material

Harrison W. Gabel, G. Ruvkun, Y. Tabach, 2022 .

Feedback between a retinoid-related nuclear receptor and the let-7 microRNAs controls the pace and number of molting cycles in C. elegans

John K. Kim, A. Frand, Ruhi Patel, 2018, bioRxiv.

Transcriptional Regulation by Pho23 Modulates the Frequency of Autophagosome Formation

John K. Kim, D. Klionsky, Dingxuan He, 2014, Current Biology.

The Gene-Silencing Protein MORC-1 Topologically Entraps DNA and Forms Multimeric Assemblies to Cause DNA Compaction.

A. Burlingame, John K. Kim, S. Jacobsen, 2019, Molecular cell.