B. Mecham

发表

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements

Isaac S. Kohane, Zoltan Szallasi, Aron C. Eklund, 2005, BMC Bioinformatics.

Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements.

Z. Szallasi, I. Kohane, B. Mecham, 2004, Nucleic acids research.

Systematic Analysis of Challenge-Driven Improvements in Molecular Prognostic Models for Breast Cancer

Adam A. Margolin, Benjamin A. Sauerwine, J. Hellerstein, 2013, Science Translational Medicine.

A statin-dependent QTL for GATM expression is associated with statin-induced myopathy

Christopher D. Brown, M. Rieder, R. Collins, 2013, Nature.

Increased measurement accuracy for sequence-verified microarray probes.

Zoltan Szallasi, Isaac Kohane, Yoel Sadovsky, 2004, Physiological genomics.

Expression

M. Watson, B. Mecham, T. Mariani, 2003, The Oxford Handbook of Western Music and Philosophy.

Expression profiles of the mouse lung identify a molecular signature of time-to-birth.

Isaac S. Kohane, Alvin T. Kho, Soumyaroop Bhattacharya, 2009, American journal of respiratory cell and molecular biology.

The SERPINE2 gene is associated with chronic obstructive pulmonary disease.

Christoph Lange, Edwin K Silverman, Scott T Weiss, 2006, American journal of human genetics.

Histone deacetylase inhibition elicits an evolutionarily conserved self-renewal program in embryonic stem cells.

Paul Pavlidis, Muneesh Tewari, Zhijun Duan, 2009, Cell stem cell.

Sox5 regulates beta-cell phenotype and is reduced in type 2 diabetes

Ivan G. Costa, L. Eliasson, B. Mecham, 2017, Nature Communications.

Derivation of naïve human embryonic stem cells

Angelique M. Nelson, C. Ware, H. Ruohola-Baker, 2014, Proceedings of the National Academy of Sciences.

Exome sequencing identifies a recurrent de novo ZSWIM6 mutation associated with acromelic frontonasal dysostosis.

D. Nickerson, Joshua D. Smith, B. Mecham, 2014, American journal of human genetics.

A Distinct Smoothened Mutation Causes Severe Cerebellar Developmental Defects and Medulloblastoma in a Novel Transgenic Mouse Model

J. Olson, J. Schelter, M. Cleary, 2012, Molecular and Cellular Biology.

Transcriptome correlation analysis identifies two unique craniosynostosis subtypes associated with IRS1 activation.

B. Mecham, L. Mangravite, R. Beyer, 2012, Physiological genomics.

Osteoblast differentiation profiles define sex specific gene expression patterns in craniosynostosis.

M. Smyth, B. Mecham, R. Beyer, 2015, Bone.

Corrigendum: Endothelial to mesenchymal transition is common in atherosclerotic lesions and is associated with plaque instability

Jason C. Kovacic, Ariella Cohain, Gaurav Pandey, 2017, Nature Communications.

Genetic background influences murine prostate gene expression: implications for cancer phenotypes

P. Nelson, B. Mecham, C. Pritchard, 2007, Genome Biology.

Sulforaphane reduces hepatic glucose production and improves glucose control in patients with type 2 diabetes

S. Friend, B. Mecham, J. Derry, 2017, Science Translational Medicine.

Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling

Erhan Bilal, Benjamin A. Logsdon, Gustavo Stolovitzky, 2013, PLoS Comput. Biol..

Conserved gene expression programs integrate mammalian prostate development and tumorigenesis.

Madhuchhanda Bhattacharjee, Robert A Sikes, P. Nelson, 2009, Cancer research.

Induction of the plasminogen activator system by mechanical stimulation of human bronchial epithelial cells.

I. Kohane, J. Drazen, B. Mecham, 2006, American journal of respiratory cell and molecular biology.

Endothelial to mesenchymal transition is common in atherosclerotic lesions and is associated with plaque instability

V. Fuster, B. Mecham, E. Nabel, 2016, Nature Communications.

Individual Matrix Metalloproteinases Control Distinct Transcriptional Responses in Airway Epithelial Cells Infected with Pseudomonas aeruginosa

B. Mecham, S. Gharib, W. Parks, 2007, Infection and Immunity.

A Distributed Network for Intensive Longitudinal Monitoring in Metastatic Triple-Negative Breast Cancer.

Chris P. Miller, D. Haussler, Su-In Lee, 2016, Journal of the National Comprehensive Cancer Network : JNCCN.

Safety, Feasibility, and Merits of Longitudinal Molecular Testing of Multiple Metastatic Sites to Inform mTNBC Patient Treatment in the Intensive Trial of Omics in Cancer

M. Dorschner, Janusz Dutkowski, B. Mecham, 2022, JCO precision oncology.

MyoD is a tumor suppressor gene in medulloblastoma.

J. Olson, S. Tapscott, B. Mecham, 2013, Cancer research.

Differential Expression of Extracellular Matrix-Mediated Pathways in Single-Suture Craniosynostosis

B. Mecham, R. Beyer, M. Cunningham, 2011, PloS one.

Transcriptional analysis of human cranial compartments with different embryonic origins.

James W. MacDonald, B. Mecham, M. Cunningham, 2015, Archives of oral biology.

Extracellular matrix gene expression in the developing mouse aorta

Thomas J. Mariani, B. Mecham, T. Mariani, 2005 .

Supervised normalization of microarrays

John D. Storey, John D. Storey, Peter S. Nelson, 2010, Bioinform..

The SERPINE2 gene is associated with chronic obstructive pulmonary disease.

E. Silverman, F. Speizer, B. Mecham, 2006, American Journal of Human Genetics.

Pharmacological Silencing of MicroRNA-152 Prevents Pressure Overload–Induced Heart Failure

G. Pandey, B. Mecham, I. Karakikes, 2020, Circulation. Heart failure.

PPP2R2C Loss Promotes Castration-Resistance and Is Associated with Increased Prostate Cancer-Specific Mortality

P. Nelson, B. Mecham, C. Grandori, 2013, Molecular Cancer Research.

Cell Death and Survival PPP 2 R 2 C Loss Promotes Castration-Resistance and Is Associated with Increased Prostate Cancer-Speci fi c Mortality

P. Nelson, B. Mecham, C. Grandori, 2013 .

Bioconductor ’ s snm package

John D. Storey, B. Mecham, 2013 .

Expression profiles of the mouse lung identify a molecular signature of time-to-birth.

I. Kohane, A. Kho, B. Mecham, 2009, American journal of respiratory cell and molecular biology.

Transcriptional analysis of human cranial compartments with different embryonic origins.

James W. MacDonald, B. Mecham, M. Cunningham, 2015, Archives of oral biology.