Jeff Gentry

发表

Bioconductor: open software development for computational biology and bioinformatics

Jean YH Yang, K. Hornik, L. Tierney, 2004, Genome Biology.

Comprehensive molecular characterization of clear cell renal cell carcinoma

Steven J. M. Jones, Benjamin J. Raphael, Evan O. Paull, 2013, Nature.

Variation across 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human protein-coding genes

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2019, bioRxiv.

Comprehensive molecular portraits of human breast tumors

Steven J. M. Jones, Andrew H. Beck, Joshua F. McMichael, 2012, Nature.

Whole-exome sequencing and clinical interpretation of FFPE tumor samples to guide precision cancer medicine

Adam Kiezun, Petar Stojanov, Kristian Cibulskis, 2013, Nature Medicine.

The mutational constraint spectrum quantified from variation in 141,456 humans

Irina M. Armean, Judy H. Cho, Y. J. Kim, 2019, Nature.

The mutational constraint spectrum quantified from variation in 141,456 humans

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2020, Nature.

Whole-exome sequencing and clinical interpretation of formalin-fixed , paraffin-embedded tumor samples to guide precision cancer medicine

Dennis C. Friedrich, A. McKenna, A. Sivachenko, 2014 .

Landscape of multi-nucleotide variants in 125,748 human exomes and 15,708 genomes

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2020, Nature Communications.

Characterising the loss-of-function impact of 5’ untranslated region variants in 15,708 individuals

Tariq Ahmad, Patrick F. Sullivan, Andres Metspalu, 2020, Nature Communications.

Characterising the loss-of-function impact of 5’ untranslated region variants in 15,708 individuals

Tariq Ahmad, Patrick F. Sullivan, Andres Metspalu, 2019, bioRxiv.

The effect of LRRK2 loss-of-function variants in humans

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2020, Nature Medicine.

Evaluating drug targets through human loss-of-function genetic variation

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2019, Nature.

Full-stack genomics pipelining with GATK4 + WDL + Cromwell

Kate Voss, Geraldine A. Van der Auwera, Jeff Gentry, 2017 .

Author Correction: The mutational constraint spectrum quantified from variation in 141,456 humans

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2021, Nature.

Integrated genomic characterization of endometrial carcinoma

Steven J. M. Jones, Joshua M. Stuart, Richard A. Moore, 2013, Nature.

Transcript expression-aware annotation improves rare variant interpretation

Jonathan M. Mudge, Ryan L. Collins, Beryl B. Cummings, 2020, Nature.

A structural variation reference for medical and population genetics

Tariq Ahmad, Patrick F. Sullivan, Mark I. McCarthy, 2020, Nature.

A structural variation reference for medical and population genetics

Ryan L. Collins, Jack M. Fu, Beryl B. Cummings, 2020, Nature.

Network structures and algorithms in Bioconductor

Robert Gentleman, Vincent J. Carey, Jeff Gentry, 2005, Bioinform..

Characterising the loss-of-function impact of 5’ untranslated region variants in 15,708 individuals

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2020, Nature Communications.

Landscape of multi-nucleotide variants in 125,748 human exomes and 15,708 genomes

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2020, Nature Communications.

Transcript expression-aware annotation improves rare variant interpretation

Jonathan M. Mudge, Ryan L. Collins, Beryl B. Cummings, 2020, Nature.

Notch signaling expands a pre-malignant pool of T-cell acute lymphoblastic leukemia clones without affecting leukemia-propagating cell frequency

S. Ramaswamy, D. Neuberg, A. Look, 2012, Leukemia.

Addendum: The mutational constraint spectrum quantified from variation in 141,456 humans

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2021, Nature.

Evaluating drug targets through human loss-of-function genetic variation

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2020, Nature.

SGDI: System for Genomic Data Integration

Srini Ramaswamy, Robert Gentleman, Deepayan Sarkar, 2007, Pacific Symposium on Biocomputing.

Author Correction: The mutational constraint spectrum quantified from variation in 141,456 humans

Ryan L. Collins, Beryl B. Cummings, Kristen M. Laricchia, 2021, Nature.

Whole-exome sequencing and clinical interpretation of FFPE tumor samples to guide precision cancer medicine

Dennis C. Friedrich, A. McKenna, A. Sivachenko, 2013, Nature Medicine.