E. Zotenko

发表

Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification

D. O’Leary, E. Zotenko, T. Przytycka, 2006, BMC Structural Biology.

COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations

Teresa M. Przytycka, Raja Jothi, Elena Zotenko, 2006, Bioinform..

Inferring Physical Protein Contacts from Large-Scale Purification Data of Protein Complexes*

E. Zotenko, Sven-Eric Schelhorn, Julián Mestre, 2011, Molecular & Cellular Proteomics.

Predicting domain-domain interactions using a parsimony approach

K. Guimaraes, Raja Jothi, E. Zotenko, 2006, Genome Biology.

Graph Theoretical Approaches to Delineate Dynamics of Biological Processes

E. Zotenko, T. Przytycka, 2007 .

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling

Timothy J. Peters, E. Zotenko, R. Pidsley, 2016, Genome Biology.

Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations

Aaron T. L. Lun, Fabian A. Buske, Denis C. Bauer, 2016, Genome research.

DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer

Matt Trau, Darren Korbie, Susan J. Clark, 2015, Nature Communications.

Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal key epigenetic differences at developmental genes

Denis C. Bauer, Timothy J. Peters, E. Zotenko, 2019, Scientific Reports.

DNA methylation is required to maintain DNA replication timing precision and 3D genome integrity

Ira W. Deveson, Cathryn M. Gould, E. Zotenko, 2020, bioRxiv.

Genome-scale methylation assessment did not identify prognostic biomarkers in oral tongue carcinomas

E. Zotenko, R. Pidsley, S. Clark, 2015, Clinical Epigenetics.

Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer

Cathryn M. Gould, Timothy J. Peters, E. Zotenko, 2019, Nature Communications.

Replication timing shapes the cancer epigenome and the nature of chromosomal rearrangements

Cathryn M. Gould, Susan J. Clark, Clare Stirzaker, 2018, bioRxiv.

DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity.

Ira W. Deveson, Cathryn M. Gould, E. Zotenko, 2021, Cell reports.

DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns.

Cathryn M. Gould, Timothy J. Peters, M. Rubin, 2019, Cancer cell.

Enduring epigenetic landmarks define the cancer microenvironment

Timothy J. Peters, J. Kench, E. Zotenko, 2018, Genome research.

MicroRNA profiling of the pubertal mouse mammary gland identifies miR-184 as a candidate breast tumour suppressor gene

R. Russell, E. Zotenko, D. James, 2015, Breast Cancer Research.

Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality

Dianne P. O'Leary, Julián Mestre, Teresa M. Przytycka, 2008, PLoS Comput. Biol..

Methyl-CpG-binding protein MBD2 plays a key role in maintenance and spread of DNA methylation at CpG islands and shores in cancer

E. Zotenko, R. Pidsley, S. Clark, 2016, Oncogene.

Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA

Cathryn M. Gould, E. Zotenko, S. Clark, 2017, Epigenetics & Chromatin.

A bioengineered microenvironment to quantitatively measure the tumorigenic properties of cancer-associated fibroblasts in human prostate cancer.

Anna V. Taubenberger, E. Zotenko, D. Hutmacher, 2013, Biomaterials.

Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value

Rodney J Scott, Matt Trau, Mark D Robinson, 2015, Nature Communications.

Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers

Teresa M. Przytycka, Elena Zotenko, Adam Friedman, 2012, Bioinform..

Computational methods in protein structure comparison and analysis of protein interaction networks

Elena Zotenko, E. Zotenko, 2007 .

Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA

Cathryn M. Gould, E. Zotenko, S. Clark, 2017, Epigenetics & Chromatin.

Coordinated epigenetic remodelling of transcriptional networks occurs during early breast carcinogenesis

M. Robinson, E. Zotenko, S. Clark, 2015, Clinical Epigenetics.

Structural footprinting in protein structure comparison : the impact of structural fragments

D. O’Leary, W. Wilbur, E. Zotenko, 2007 .

Abstract 916: Combined genomic and epigenomic assessment of cell-free circulating tumor DNA (ctDNA) improves assay sensitivity in early-stage colorectal cancer (CRC)

Joon-Oh Park, H. Kim, E. Zotenko, 2019, Clinical Research (Excluding Clinical Trials).

Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations

Teresa M. Przytycka, Raja Jothi, Elena Zotenko, 2005, Algorithms for Molecular Biology.

On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking

Thomas Lengauer, Andreas Hildebrandt, Elena Zotenko, 2012, J. Chem. Inf. Model..

Genome-wide DNA methylation profiling in triple-negative breast cancer reveals epigenetic signatures with important clinical value

E. Zotenko, S. Clark, C. Stirzaker, 2016, Molecular & cellular oncology.

Abstract 2316: Integrated genomic and epigenomic cell-free DNA (cfDNA) analysis for the detection of early-stage colorectal cancer

E. Zotenko, W. Greenleaf, Oscar Westesson, 2020 .

MicroRNA profiling of the pubertal mouse mammary gland identifies miR-184 as a candidate breast tumour suppressor gene

R. Russell, E. Zotenko, D. James, 2015, Breast Cancer Research.

A bioengineered microenvironment to quantitatively measure the tumorigenic properties of cancer-associated fibroblasts in human prostate cancer.

Anna V. Taubenberger, E. Zotenko, D. Hutmacher, 2013, Biomaterials.