Yadong Wang

Yadong Wang, Tianjiao Zhang, Yadong Wang, 2019, 2019 12th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI).

An Information Gain-based Method for Evaluating the Classification Power of Features Towards Identifying Enhancers

Yadong Wang, Qinghua Jiang, Tianjiao Zhang, 2020 .

DeepDNA: a hybrid convolutional and recurrent neural network for compressing human mitochondrial genomes

Yadong Wang, Yongtian Wang, Yang Bai, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

DisSetSim: an online system for calculating similarity between disease sets

Yadong Wang, Lingling Zhao, Hongbo Shi, 2016, Journal of Biomedical Semantics.

Psi-Caller: A Lightweight Short Read-Based Variant Caller With High Speed and Accuracy

Yadong Wang, Tianyi Zang, Bo Liu, 2021, Frontiers in Cell and Developmental Biology.

IIMLP: integrated information-entropy-based method for LncRNA prediction

Li Zhang, Huinian Li, Qingzhe Xu, 2021, BMC Bioinformatics.

Prediction of Human LncRNAs Based on Integrated Information Entropy Features

Yuan Ping, Wei Jiang, Li Zhang, 2019, ICIC.

ProbPFP: A Multiple Sequence Alignment Algorithm Combining Partition Function and Hidden Markov Model with Particle Swarm Optimization

Yadong Wang, Nan Wang, Shuilin Jin, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

PanSVR: Pan-Genome Augmented Short Read Realignment for Sensitive Detection of Structural Variations

Yadong Wang, Tao Jiang, Junyi Li, 2021, Frontiers in Genetics.

ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function

Nan Wang, Yadong Wang, Shuilin Jin, 2019, BMC Bioinformatics.

Constructing Networks of Organelle Functional Modules in Arabidopsis

Yadong Wang, Tao Wang, Jiajie Penga, 2016, Current genomics.

SIDD: A Semantically Integrated Database towards a Global View of Human Disease

Guohua Wang, Peigang Xu, Liang Cheng, 2013, PloS one.

Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation

Tao Jiang, Yadong Wang, Zhe Cui, 2021, BMC Bioinform..

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Bo Liu, Yadong Wang, Yongzhuang Liu, 2020, bioRxiv.

Review of Drug Repositioning Approaches and Resources

Jie Li, Yadong Wang, Haozhe Xie, 2018, International journal of biological sciences.

interacCircos: an R package based on JavaScript libraries for the generation of interactive circos plots

Tianyi Zang, Ya Cui, Yadong Wang, 2021, Bioinform..

deGSM: memory scalable construction of large scale de Bruijn Graph

Bo Liu, Junyi Li, Yan Gao, 2018, bioRxiv.

ERDS-Exome: A Hybrid Approach for Copy Number Variant Detection from Whole-Exome Sequencing Data

Yadong Wang, Rui Ma, Liran Juan, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

An integrated approach for copy number variation discovery in parent-offspring trios.

Yadong Wang, Xiaoliang Wu, Yongzhuang Liu, 2021, Briefings in bioinformatics.

regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions

Yadong Wang, Yunlong Liu, Mingxiang Teng, 2012, Bioinform..

Identifying Alzheimer's disease-related miRNA Based on semi-Clustering.

Yadong Wang, Yang Hu, Tianyi Zhao, 2019, Current gene therapy.

M2PP: a novel computational model for predicting drug-targeted pathogenic proteins

Yadong Wang, Jie Li, Shiming Wang, 2022, BMC Bioinformatics.

Empirical Bayes Model Comparisons for Differential Methylation Analysis

Kenneth P. Nephew, Mingxiang Teng, Guohua Wang, 2012, Comparative and functional genomics.

Analysis and prediction of protein local structure based on structure alphabets

Xiaolong Wang, Lei Lin, Qiwen Dong, 2008, Proteins.

An automated quality control pipeline for eQTL analysis with RNA-seq data

Yadong Wang, Tao Wang, Xianjun Dong, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

ScGSLC: An unsupervised graph similarity learning framework for single-cell RNA-seq data clustering

Wei Jiang, Bo Liu, Jing Liu, 2020, Comput. Biol. Chem..

ScSSC: Semi-supervised Single Cell Clustering Based on 2D Embedding

Yulin Wu, Yadong Wang, Bo Liu, 2021, ICIC.

Molecular Association between Diabetes-Specific Local Gene Network and Nutrient Metabolism Modules

Yadong Wang, Tingting Zhang, Qingdai Liu, 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering.

Y-SPCR: A new dimensionality reduction method for gene expression data classification

Yadong Wang, Jie Li, Li Zhou, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Factor graph-aggregated heterogeneous network embedding for disease-gene association prediction

Yadong Wang, Bo Liu, Junyi Li, 2020, BMC Bioinform..

Understanding Transcription Factor Regulation by Integrating Gene Expression and DNase I Hypersensitive Sites

Guohua Wang, Fang Wang, Yunlong Liu, 2015, BioMed research international.

An Approach for Recognition of Enhancer-promoter Associations based on Random Forest

Yadong Wang, Tianjiao Zhang, Yadong Wang, 2019, ICBIP.

Optimizing gene set annotations combining GO structure and gene expression data

Yadong Wang, Dong Wang, Jie Li, 2018, BMC Systems Biology.

CDL4CDRP: A Collaborative Deep Learning Approach for Clinical Decision and Risk Prediction

Yadong Wang, Tianyi Zang, Mingrui Sun, 2019, Processes.

LAMSA: fast split read alignment with long approximate matches

Yadong Wang, Yan Gao, Bo Liu, 2017, Bioinform..

Prediction for High Risk Clinical Symptoms of Epilepsy Based on Deep Learning Algorithm

Yadong Wang, Tianyi Zang, Mingrui Sun, 2018, IEEE Access.

Alignment results of SOBOM for OAEI 2010

Peigang Xu, Yadong Wang, Haijun Tao, 2009, OM.

FSM: Fast and Scalable Network Motif Discovery for Exploring Higher-order Network Organizations.

Yadong Wang, Jiajie Peng, Tao Wang, 2020, Methods.

Identifying Representative Network Motifs for Inferring Higher-order Structure of Biological Networks

Yadong Wang, Tao Wang, Jin Chen, 2018, bioRxiv.

rHAT: fast alignment of noisy long reads with regional hashing

Yadong Wang, Mingxiang Teng, Bo Liu, 2016, Bioinform..

Improving alignment accuracy on homopolymer regions for semiconductor-based sequencing technologies

Yadong Wang, Weixing Feng, Yunlong Liu, 2016, BMC Genomics.

Weighted Network-Based Inference of Human MicroRNA-Disease Associations

Yadong Wang, Guohua Wang, Tianjiao Zhang, 2010, 2010 Fifth International Conference on Frontier of Computer Science and Technology.

A Pipeline for Reconstructing Somatic Copy Number Alternation’s Subclonal Population-Based Next-Generation Sequencing Data

Yadong Wang, Yanshuo Chu, Chenxi Nie, 2020, Frontiers in Genetics.

SpliVert: A Protein Multiple Sequence Alignment Refinement Method Based on Splitting-Splicing Vertically.

Yadong Wang, Bo Liu, Jiajie Peng, 2019, Protein and peptide letters.

Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms

Yadong Wang, Jie Li, Yan-Shuo Chu, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A Bipartite Network Module-Based Project to Predict Pathogen–Host Association

Yadong Wang, Jie Li, Shiming Wang, 2020, Frontiers in Genetics.

Network-based methods for identifying critical pathways of complex diseases: a survey.

Hanqing Xue, Yadong Wang, Yadong Wang, 2016, Molecular bioSystems.

Identification of subpopulations with distinct treatment benefit rate using the Bayesian tree

Yang Hu, Changyu Shen, Yadong Wang, 2016, Biometrical journal. Biometrische Zeitschrift.

Mining Relationships among Multiple Entities in Biological Networks

Jin Chen, Jiajie Peng, Yadong Wang, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Assessment of Machine Learning Methods for Classification in Single Cell ATAC-seq

Bo Liu, Yadong Wang, Liran Juan, 2020, 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Prioritization of disease microRNAs through a human phenome-microRNAome network

Yadong Wang, Mingxiang Teng, Qinghua Jiang, 2010, BMC Systems Biology.

SKSV: ultrafast structural variation detection from circular consensus sequencing reads

Tao Jiang, Tianyi Zang, Yadong Wang, 2021, Bioinform..

Carbon Nanopowder Binds with DNA and May Induce DNA Aggregation

Yadong Wang, Qiaoli Ji, Hong-jie An, 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering.

Fast and Accurate Classification of Meta-Genomics Long Reads With deSAMBA

Yadong Wang, Yang Hu, Bo Liu, 2021, Frontiers in Cell and Developmental Biology.

Accurate annotation of metagenomic data without species-level references

Yadong Wang, Bo Liu, S.M. Yiu, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

deSPI: efficient classification of metagenomic reads with lightweight de Bruijn graph-based reference indexing

Yadong Wang, Bo Liu, Dengfeng Guan, 2016, bioRxiv.

A Neighborhood-Based Global Network Model to Predict Drug-Target Interactions

Yadong Wang, Jie Li, Liran Juan, 2021, IEEE/ACM Transactions on Computational Biology & Bioinformatics.

Integrated entropy-based approach for analyzing exons and introns in DNA sequences

Yadong Wang, Renjie Tan, Bo Liu, 2019, BMC Bioinformatics.

Prognostic prediction of carcinoma by a differential-regulatory-network-embedded deep neural network

Hong Li, Bo Liu, Ying Liu, 2020, Comput. Biol. Chem..

Efficient iterative Hi-C scaffolder based on N-best neighbors

Guohua Wang, Richard Durbin, Dengfeng Guan, 2021, BMC Bioinform..

Genome sequence assembly evaluation using long-range sequencing data

Shane A. McCarthy, R. Durbin, W. Chow, 2022, bioRxiv.

GLProbs: Aligning Multiple Sequences Adaptively

Yadong Wang, Siu-Ming Yiu, David Wai-Lok Cheung, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

GLProbs: aligning multiple sequences adaptively

Siu-Ming Yiu, Hing-Fung Ting, Tak-Wah Lam, 2015, TCBB.

REUR: A unified deep framework for signet ring cell detection in low-resolution pathological images

Ziyang Yuan, Yang Bai, Bo Chen, 2021, Comput. Biol. Medicine.

A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip

Yadong Wang, Zhenxing Wang, Xiaoliang Wu, 2018, BMC Bioinformatics.

Hidden Markov induced Dynamic Bayesian Network for recovering time evolving gene regulatory networks

Yadong Wang, Shijia Zhu, Yadong Wang, 2015, Scientific Reports.

A comparison on predicting functional impact of genomic variants

E. Wang, Yadong Wang, Jie Li, 2022, NAR genomics and bioinformatics.

An improved advanced fragment analysis-based classification and risk stratification of pediatric acute lymphoblastic leukemia

Yadong Wang, Jie Li, G. Feng, 2019, Cancer Cell International.

misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads

Yadong Wang, Rui Zhang, S. Yiu, 2015, BMC Bioinformatics.

ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive Learning

Yadong Wang, B. Liu, Linlin Du, 2023, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Prediction of the disease causal genes based on heterogeneous network and multi-feature combination method

Yadong Wang, Junyi Li, Sen Li, 2022, Comput. Biol. Chem..

deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches

Bo Liu, Yadong Wang, Gaoyang Li, 2019, bioRxiv.

Predicting Drug-Disease Associations Through Similarity Network Fusion and Multi-View Feature Projection Representation

Yadong Wang, Jie Li, Dong Wang, 2023, IEEE Journal of Biomedical and Health Informatics.

Prot2GO: Predicting GO Annotations From Protein Sequences and Interactions

Yadong Wang, Bo Liu, Junyi Li, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A Bidirectional Fuzzy Index and Approximate Search Algorithm for Next Generation Sequencing

Bo Liu, Yadong Wang, Guangri Quan, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

MEAHNE: miRNA–Disease Association Prediction Based on Semantic Information in a Heterogeneous Network

Yadong Wang, Bo Liu, Yang Zhang, 2022, Life.

Statistical Approaches for the Construction and Interpretation of Human Protein-Protein Interaction Network

Yadong Wang, Ying Zhang, Jun Zhang, 2016, BioMed research international.