D. Kahn

发表

Enzyme-specific profiles for genome annotation: PRIAM.

C. Claudel-Renard, C. Chevalet, T. Faraut, 2003, Nucleic acids research.

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites

Alex Bateman, Rolf Apweiler, Henning Hermjakob, 2002, Briefings Bioinform..

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

Alex Bateman, Rolf Apweiler, Beate Marx, 2001, Nucleic Acids Res..

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

Charles E. Chapple, E. Mauceli, B. Birren, 2004, Nature.

Modular analysis of the control of complex metabolic pathways.

H. Westerhoff, D. Kahn, S. Schuster, 1993, Biophysical chemistry.

Control theory of regulatory cascades.

H. Westerhoff, D. Kahn, Daniel Kahn, 1991, Journal of theoretical biology.

An alternative PII protein in the regulation of glutamine synthetase in Escherichia coli

Daniel Kahn, Douwe Molenaar, H. Westerhoff, 1996, Molecular microbiology.

Modular arrangement of proteins as inferred from analysis of homology

E. Sonnhammer, D. Kahn, 1994, Protein science : a publication of the Protein Society.

Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021

A. Goffeau, B. Purnelle, F. Galibert, 2001, Proceedings of the National Academy of Sciences of the United States of America.

The Composite Genome of the Legume Symbiont Sinorhizobium meliloti

Ronald W. Davis, A. Goffeau, B. Purnelle, 2001, Science.

Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid

R. W. Davis, F. Galibert, T. Jones, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis.

O. Jaillon, D. Kahn, J. Gouzy, 2002, Nucleic acids research.

Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants1[OPEN]

Michael Banf, Daniel Kahn, Seung Y. Rhee, 2017, Plant Physiology.

Global changes in gene expression in Sinorhizobium meliloti 1021 under microoxic and symbiotic conditions.

D. Kahn, A. Pühler, A. Becker, 2004, Molecular plant-microbe interactions : MPMI.

On the identifiability of metabolic network models

H. D. Jong, D. Kahn, E. Cinquemani, 2013, Journal of mathematical biology.

Structural and practical identifiability of approximate metabolic network models

Eugenio Cinquemani, Hidde de Jong, Daniel Kahn, 2012 .

Correction: The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes

J. Geiselmann, D. Kahn, D. Ropers, 2010, PLoS Computational Biology.

Transcription patterns of Rhizobium meliloti symbiotic plasmid pSym: identification of nifA-independent fix genes

D. Kahn, P. Pognonec, M. David, 1987, Journal of bacteriology.

D. Kahn, M. Patterson, T. Bernard, 2016, bioRxiv.

Some Aspects of the Physiology of Dinitrogen Fixation

D. Kahn, R. Dixon, J. Postgate, 1981 .

Control analysis of modular metabolic networks.

Hans V. Westerhoff, Daniel Kahn, H. Westerhoff, 1994 .

Importance of Metabolic Coupling for the Dynamics of Gene Expression Following a Diauxic Shift in E. coli

H. D. Jong, J. Geiselmann, D. Kahn, 2011 .

Two distinct classes of FixJ binding sites defined by in vitro selection

D. Kahn, Lionel Ferrières, 2002, FEBS letters.

fixK, a gene homologous with fnr and crp from Escherichia coli, regulates nitrogen fixation genes both positively and negatively in Rhizobium meliloti.

D. Kahn, J. Jacobs, J. Batut, 1989, The EMBO journal.

Enzyme-speciﬁc proﬁles for genome annotation: PRIAM

C. Claudel-Renard, C. Chevalet, T. Faraut, 2022 .

Rhizobium melilotifixGHI Sequence Predicts Involvement ofa Specific Cation PumpinSymbiotic Nitrogen Fixation

D. Kahn, J. Batut, M. David, 1989 .

Nonlinear control and self-organization

V. Lakshmikantham, Peter Ruhdal Jensen, Boris N. Kholodenko, 1995 .

Symbiotic nitrogen fixation does not require adenylylation of glutamine synthetase I in Rhizobium meliloti.

D. Kahn, T. Arcondéguy, I. Huez, 1996, FEMS microbiology letters.

THE MOLECULAR ENZYMOLOGY OF NITROGEN FIXATION

D. Kahn, V. Buchanan-Wollaston, R. Eady, 2013 .

Metabolic control of Klebsiella pneumoniae mRNA degradation by the availability of fixed nitrogen.

D. Kahn, M. Hawkins, R. Eady, 1982, Journal of general microbiology.

Nitrogen Fixation in Klebsiella pneumoniae: Nitrogenase Levels and the Effect of Added Molybdate on Nitrogenase Derepressed under Molybdenum Deprivation

D. Kahn, M. Hawkins, Robert R. Fady, 1982 .

Analysis of regulation of Klebsiella pneumoniae nitrogen fixation (nif) gene cluster with gene fusions

D. Kahn, M. Merrick, R. Dixon, 1980, Nature.

The Rhizobium meliloti PII protein, which controls bacterial nitrogen metabolism, affects alfalfa nodule development.

D. Kahn, T. Arcondéguy, P. Tillard, 1997, Genes & development.

Nitrogen regulation in Sinorhizobium meliloti probed with whole genome arrays.

D. Kahn, H. Bergès, J. Fourment, 2004, FEMS microbiology letters.

glnD and mviN Are Genes of an Essential Operon in Sinorhizobium meliloti

D. Kahn, T. Arcondéguy, C. Kennedy, 2001, Journal of bacteriology.

The Rhizobium meliloti PII Protein Affects Alfalfa Nodule Development and Mobilisation of Fixed Nitrogen

D. Kahn, T. Arcondéguy, P. Tillard, 1998 .

Rhizobium meliloti regulatory gene fixJ activates transcription of R. meliloti nifA and fixK genes in Escherichia coli

D. Kahn, J. Batut, P. Boistard, 1989, Journal of bacteriology.

Structure and Regulation of Fix Genes from Rhizobium Meliloti

D. Kahn, J. Batut, P. Boistard, 1988 .

Intramolecular signal transduction within the FixJ transcriptional activator: in vitro evidence for the inhibitory effect of the phosphorylatable regulatory domain.

D. Kahn, J. Fourment, J. Reyrat, 1994, Nucleic acids research.

Methionyl‐Transfer‐RNA Transformylase from Escherichia coli

D. Kahn, P. Dessen, M. Fromant, 1980 .

The pSym Plasmid of Rhizobium Meliloti. II. Transcription Studies

D. Kahn, M. David, O. Domergue, 1984 .

On the identifiability of metabolic network models

D. Kahn, E. Cinquemani, H. de Jong, 2012, Journal of Mathematical Biology.

An environmental perspective on metabolism.

Oliver Ebenhöh, Daniel Kahn, Thomas Handorf, 2008, Journal of theoretical biology.

InterPro : An integrated documentation resource for protein families , domains and functional sites The InterPro Consortium :

Alex Bateman, Rolf Apweiler, Beate Marx, 2005 .

Modular structure of Fix J: homology of the transcriptional activator domain with the ‐35 binding domain of sigma factors

D. Kahn, G. Ditta, 1991, Molecular microbiology.

High-quality sequence clustering guided by network topology and multiple alignment likelihood

Franck Picard, Vincent Miele, Simon Penel, 2012, Bioinform..

InterPro, progress and status in 2005

Cathy H. Wu, Alex Bateman, Rolf Apweiler, 2004, Nucleic Acids Res..

The ProDom database of protein domain families: more emphasis on 3D

Sébastien Carrère, Catherine Bru, Emmanuel Courcelle, 2004, Nucleic Acids Res..

Parallel Large Scale Inference of Protein Domain Families

Frédéric Vivien, Clément Rezvoy, Daniel Kahn, 2008, 2008 14th IEEE International Conference on Parallel and Distributed Systems.

ProDom: Automated Clustering of Homologous Domains

Jérôme Gouzy, Sébastien Carrère, Florence Servant, 2002, Briefings Bioinform..

Automated clustering of homologous domains

Florence Servant, Catherine Bru, Emmanuel Courcelle, 2002 .

The Melilo Eu Project: Sequence of the 3.7 Mb Chromosome of Sinorhizobium meliloti

A. Goffeau, B. Purnelle, F. Galibert, 2000 .

Whole Genome Protein Domain Analysis using a New Method for Domain Clustering

Jérôme Gouzy, Florence Corpet, Daniel Kahn, 1999, Comput. Chem..

XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences

Jérôme Gouzy, Florence Corpet, Daniel Kahn, 1997, Comput. Appl. Biosci..

InterPro: the integrative protein signature database

Robert D. Finn, Cathy H. Wu, Alex Bateman, 2008, Nucleic Acids Res..

New members of the Drosophila Myc transcription factor subfamily revealed by a genome-wide examination for basic helix-loop-helix genes

D. Kahn, M. Haenlin, Sandrine Peyrefitte, 2001, Mechanisms of Development.

The Relationship among Gene Expression, the Evolution of Gene Dosage, and the Rate of Protein Evolution

D. Kahn, L. Duret, Jean-Francois Gout, 2010, PLoS genetics.

Recent improvements of the ProDom database of protein domain families

Jérôme Gouzy, Florence Corpet, Daniel Kahn, 1999, Nucleic Acids Res..

The InterPro Database, 2003 brings increased coverage and new features

Alex Bateman, Rolf Apweiler, Nicola J. Mulder, 2003, Nucleic Acids Res..

The InterPro protein families database: the classification resource after 15 years

Huaiyu Mi, Robert D. Finn, Matthew Fraser, 2014, Nucleic Acids Res..

Browsing protein families via the 'Rich Family Description' format

Jérôme Gouzy, Florence Corpet, Daniel Kahn, 1999, Bioinform..

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

Jérôme Gouzy, Florence Corpet, Florence Servant, 2000, Nucleic Acids Res..

Cascade regulation of nif gene expression in Rhizobium meliloti

D. Kahn, J. Batut, P. Boistard, 1988, Cell.

Properties and specificity of methionyl-tRNAfMet formyltransferase from Escherichia coli.

D. Kahn, P. Dessen, S. Blanquet, 1984, Methods in enzymology.

Affinity chromatography on agarose-hexyl-adenosine-5'-phosphate of methionyl-tRNA synthetase from Escherichia coli. Application of the couplings between the methionine and ATP sites.

D. Kahn, M. Fromant, S. Blanquet, 1977, European journal of biochemistry.

InterPro in 2011: new developments in the family and domain prediction database

Robert D. Finn, Matthew Fraser, Cathy H. Wu, 2011, Nucleic acids research.

Genetic regulation of biological nitrogen fixation

D. Kahn, R. Dixon, 2004, Nature Reviews Microbiology.

The ProDom database of protein domain families

Jérôme Gouzy, Florence Corpet, Daniel Kahn, 1998, Nucleic Acids Res..

New developments in the InterPro database

Robert D. Finn, Robert Petryszak, Cathy H. Wu, 2007, Nucleic Acids Res..

Conformational changes induced by phosphorylation of the FixJ receiver domain.

D. Kahn, B. Fabry, L. Mourey, 1999, Structure.

Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in Escherichia coli.

Daniel Kahn, Valentina Baldazzi, Johannes Geiselmann, 2012, Journal of theoretical biology.

The Synthesizing Capacity of Metabolic Networks

Stefan Schuster, Daniel Kahn, Hermann-Georg Holzhütter, 2008 .

Dynamical and hierarchical coupling

Hans V. Westerhoff, Daniel Kahn, Sonia Cortassa, 1990 .

Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula

D. Kahn, C. Brochier-Armanet, Y. Rahbé, 2016, BMC Plant Biology.

The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes

Hidde de Jong, Daniel Kahn, Valentina Baldazzi, 2010, PLoS Comput. Biol..

An alternative P II protein in the regulation of glutamine synthetase in Escherichia coli

H. Westerhoff, D. Kahn, S. Hoving, 1996 .

UvA-DARE ( Digital Academic Repository ) An alternative PII protein in the regulation of glutamine synthetase in Escherichia coli

H. Westerhoff, D. Kahn, S. Hoving, 1996 .

The genes of the glutamine synthetase adenylylation cascade are not regulated by nitrogen in Escherichia coli

H. Westerhoff, D. Kahn, W. Heeswijk, 1993, Molecular microbiology.

Differential retention of metabolic genes following whole-genome duplication.

Laurent Duret, Daniel Kahn, D. Kahn, 2009, Molecular biology and evolution.

Modular structure of FixJ: homology of the transcriptional activator domain with the -35 binding domain of sigma factors.

D. Kahn, G. Ditta, 1991, Molecular microbiology.

Molecular Analysis of a Fix Cluster From Rhizobium Meliloti

D. Kahn, J. Batut, P. Boistard, 1987 .

FixJ-regulated genes evolved through promoter duplication in Sinorhizobium meliloti.

D. Kahn, J. Gouzy, Lionel Ferrières, 2004, Microbiology.

Structural transitions in the FixJ receiver domain.

D. Kahn, B. Fabry, L. Mourey, 1999, Structure.

Quantitative approaches to the analysis of the control and regulation of microbial metabolism

Douglas B. Kell, Hans V. Westerhoff, Daniel Kahn, 1991, Antonie van Leeuwenhoek.

Identification of metabolic network models from incomplete high-throughput datasets

Eugenio Cinquemani, Matteo Brilli, Hidde de Jong, 2011, Bioinform..

Phosphorylation‐induced dimerization of the FixJ receiver domain

D. Kahn, J. Schumacher, C. Ebel, 1999, Molecular microbiology.

Rhizobium meliloti fixGHI sequence predicts involvement of a specific cation pump in symbiotic nitrogen fixation

D. Kahn, P. Hirsch, J. Batut, 1989, Journal of bacteriology.

Molecular dynamics of the FixJ receiver domain: movement of the β4–α4 loop correlates with the in and out flip of Phe101

D. Kahn, L. Mouawad, D. Pérahia, 2002 .

Phosphorylation of the Rhizobium meliloti FixJ protein induces its binding to a compound regulatory region at the fixK promoter.

D. Kahn, A. Galinier, J. Batut, 1994, The Journal of biological chemistry.

Promoter-specific involvement of the FixJ receiver domain in transcriptional activation.

D. Kahn, J. Schumacher, S. Da Re, 2001, Journal of molecular biology.

Graphical interface for ProDom domain families.

F. Corpet, D. Kahn, D Kahn, 1996, Trends in biochemical sciences.

InterPro in 2011: new developments in the family and domain prediction database

Cathy H. Wu, Sarah W. Burge, Antony F. Quinn, 2012, Nucleic Acids Research.

Mutational characterization of promoter regions recognized by the Salmonella dublin virulence plasmid regulatory protein SpvR

D. Kahn, P. Grob, D. Guiney, 1997, Journal of bacteriology.

Development of Sinorhizobium meliloti Pilot Macroarrays for Transcriptome Analysis

D. Kahn, F. D. de Bruijn, H. Bergès, 2003, Applied and Environmental Microbiology.

Control involving metabolism and gene expression

Hans V. Westerhoff, Daniel Kahn, H. Westerhoff, 1993, Acta biotheoretica.

InterPro-an integrated documentation resource for protein families, domains and functional sites

Christian J. A. Sigrist, R. Durbin, C. Ponting, 2000, Bioinform..

Molecular dynamics of the FixJ receiver domain: movement of the beta4-alpha4 loop correlates with the in and out flip of Phe101.

D. Kahn, L. Mouawad, D. Pérahia, 2002, Protein science : a publication of the Protein Society.

Identification of metabolic network models from incomplete high-throughput datasets

D. Kahn, E. Cinquemani, Sara Berthoumieux, 2011, Bioinform..