T. Nakashima

发表

The three‐dimensional structure of the RNA‐binding domain of ribosomal protein L2; a protein at the peptidyl transferase center of the ribosome

M. Kimura, Atsushi Nakagawa, T. Nakashima, 1999, The EMBO journal.

Pentatricopeptide repeat motifs in the processing enzyme PRORP1 in Arabidopsis thaliana play a crucial role in recognition of nucleotide bases at TψC loop in precursor tRNAs.

M. Kimura, T. Nakashima, Takahiro J. Nakamura, 2014, Biochemical and biophysical research communications.

Mutation of the gene encoding the ribonuclease P RNA in the hyperthermophilic archaeon Thermococcus kodakarensis causes decreased growth rate and impaired processing of tRNA precursors.

M. Kimura, Y. Kawarabayasi, T. Nakashima, 2015, Biochemical and Biophysical Research Communications - BBRC.

On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis

M. Kimura, T. Nakashima, Y. Kakuta, 2015, Bioscience, biotechnology, and biochemistry.

Characterization of the peripheral structures of archaeal RNase P RNA from Pyrococcus horikoshii OT3.

M. Kimura, T. Nakashima, Y. Kakuta, 2014, Journal of biochemistry.

Functional characterization of archaeal homologs of human nuclear RNase P proteins Rpp21 and Rpp29 provides insights into the molecular basis of their cooperativity in catalysis.

M. Kimura, T. Nakashima, Kenta Izumi, 2017, Biochemical and biophysical research communications.

Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.

M. Kimura, T. Nakashima, H. Satoh, 2011, Glycobiology.

Biochemical and Crystallographic Characterization of the Starch Branching Enzyme I (BEI) from Oryza sativa L

M. Kimura, T. Nakashima, H. Satoh, 2008, Bioscience, biotechnology, and biochemistry.

Thiobencarb Herbicide Reduces Growth, Photosynthetic Activity, and Amount of Rieske Iron‐Sulfur Protein in the Diatom Thalassiosira pseudonana

T. Nakashima, Xuchun Qiu, Motoyuki Shimizu, 2013, Journal of biochemical and molecular toxicology.

Diurnal variations in expression of photosynthesis-related proteins in the harmful Raphidophyceae Chattonella marina var. antiqua

T. Nakashima, Xuchun Qiu, Yijiang Lu, 2020, Journal of Experimental Marine Biology and Ecology.

Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding.

S. Kawamura, I. Tanaka, M. Kimura, 2001, RNA.

Characterization of putative toxin/antitoxin systems in Vibrio parahaemolyticus

M. Kimura, T. Nakashima, T. Uchiumi, 2014, Journal of applied microbiology.

Molecular characterization of an insecticide-induced novel glutathione transferase in silkworm.

M. Kimura, T. Nakashima, Y. Aso, 2011, Biochimica et biophysica acta.

Molecular and biochemical characterization of a Zeta-class glutathione S-transferase of the silkmoth

M. Kimura, T. Nakashima, Y. Aso, 2009 .

Growth-Phase Dependent Variation in Photosynthetic Activity and Cellular Protein Expression Profile in the Harmful Raphidophyte Chattonella antiqua

T. Nakashima, Xuchun Qiu, Motoyuki Shimizu, 2013, Bioscience, biotechnology, and biochemistry.

In vitro reconstitution of the GTPase-associated centre of the archaebacterial ribosome: the functional features observed in a hybrid form with Escherichia coli 50S subunits.

I. Tanaka, M. Kimura, T. Nakashima, 2006, The Biochemical journal.

Efflux System for Pyridoxine in Schizosaccharomyces pombe

T. Nakashima, M. Ashiuchi, T. Yagi, 2000, Bioscience, biotechnology, and biochemistry.

Crystal structure of an archaeal Ski2p‐like protein from Pyrococcus horikoshii OT3

I. Tanaka, M. Kimura, T. Nakashima, 2007, Protein science : a publication of the Protein Society.

Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme.

I. Tanaka, M. Kimura, T. Nakashima, 2006, Journal of molecular biology.

Crystal structure of a ribonuclease from the seeds of bitter gourd (Momordica charantia) at 1.75 A resolution.

I. Tanaka, M. Kimura, T. Nakashima, 1999, Biochimica et biophysica acta.

Crystal structures of the Nicotiana glutinosa ribonuclease NT in complex with nucleoside monophosphates.

M. Kimura, T. Nakashima, S. Kawano, 2006, Journal of biochemistry.

Structure and Evolution of the 23S rRNA Binding Domain of Protein L2

I. Tanaka, M. Kimura, T. Nakashima, 2000 .

Crystal Structure and Functional Analysis of an Archaeal Chromatin Protein Alba from the Hyperthermophilic Archaeon Pyrococcus horikoshii OT3

M. Kimura, T. Nakashima, T. Osawa, 2008, Bioscience, biotechnology, and biochemistry.

Structure and Function of Archaeal Ribonuclease P

M. Kimura, T. Nakashima, Xuzhu Gao, 2017 .

Immunological Characterization of Honey Proteins and Identification of MRJP 1 as an IgE-Binding Protein

T. Nakashima, N. Takamatsu, Takeshi Hayashi, 2011, Bioscience, biotechnology, and biochemistry.

Molecular basis of alanine discrimination in editing site.

I. Tanaka, T. Nakashima, M. Yao, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Structure of cyclo(‐l‐Pro‐l‐Pro‐Gly‐l‐Pro‐l‐Leu‐Gly‐) methanol solvate monohydrate, C25H38N6O6.CH3OH.H2O

T. Nakashima, T. Yamane, I. Tanaka, 1984 .

Crystal structure of the branching enzyme I (BEI) from Oryza sativa L

M. Kimura, T. Nakashima, J. Noguchi, 2011 .

Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori.

M. Kimura, T. Nakashima, Y. Kakuta, 2011, Biochimica et biophysica acta.

A three-dimensional model of RNase P in the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

M. Kimura, T. Nakashima, Xuzhu Gao, 2017, Biochemical and biophysical research communications.

Extra-structural elements in the RNA recognition motif in archaeal Pop5 play a crucial role in the activation of RNase P RNA from Pyrococcus horikoshii OT3.

M. Kimura, T. Nakashima, Y. Kakuta, 2013, Biochemical and biophysical research communications.

Structural modeling of RNase P RNA of the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

Christian Zwieb, Makoto Kimura, Ebbe Sloth Andersen, 2011, Biochemical and biophysical research communications.

Structural Changes in Ribonuclease P RNA in the Hyperthermophilic Archaeon Pyrococcus horikoshii OT3 Induced on Interaction with Proteins

M. Kimura, T. Nakashima, Kazumasa Hada, 2010, Bioscience, biotechnology, and biochemistry.

Functional implication of archaeal homologues of human RNase P protein pair Pop5 and Rpp30.

M. Kimura, T. Nakashima, Y. Kakuta, 2016, Journal of biochemistry.

The Contribution of Peripheral Stem-Loops to the Catalytic Activity of Archaeal RNase P RNA from Pyrococcus horikoshii OT3

M. Kimura, T. Nakashima, Y. Kakuta, 2011, Bioscience, biotechnology, and biochemistry.

A three-dimensional model of RNase P in the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

M. Kimura, T. Nakashima, Xuzhu Gao, 2017, Biochemical and biophysical research communications.

Structural Changes in Ribonuclease P RNA in the Hyperthermophilic Archaeon Pyrococcus horikoshii OT3 Induced on Interaction with Proteins

M. Kimura, T. Nakashima, Kazumasa Hada, 2010, Bioscience, biotechnology, and biochemistry.

Crystallization and preliminary X-ray crystallographic study of a 23S rRNA binding domain of the ribosomal protein L2 from Bacillus stearothermophilus.

I. Tanaka, M. Kimura, T. Nakashima, 1998, Journal of structural biology.