C. Robert

D Raoult, E V Koonin, E. Koonin, 2012, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

Michael Y. Galperin, Igor B. Rogozin, Patrick Wincker, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Non-contiguous finished genome sequence and description of Alistipes ihumii sp. nov.

C. Robert, D. Raoult, P. Fournier, 2012, Standards in genomic sciences.

The rhizome of the multidrug-resistant Enterobacter aerogenes genome reveals how new "killer bugs" are created because of a sympatric lifestyle.

C. Robert, V. Barbe, D. Raoult, 2013, Molecular biology and evolution.

The DNA sequence and analysis of human chromosome 14

Patrick Wincker, Jean Weissenbach, Leroy Hood, 2023, Nature.

Draft Genome Sequence of Staphylococcus massiliensis Strain 5402776T

C. Robert, D. Raoult, V. Roux, 2012, Journal of bacteriology.

Draft Genome Sequence of Tsukamurella sp. Strain 1534

C. Robert, D. Raoult, V. Roux, 2012, Journal of bacteriology.

Draft Genome Sequence of Brevibacterium massiliense Strain 541308T

C. Robert, D. Raoult, V. Roux, 2012, Journal of bacteriology.

Draft Genome Sequence of Actinomyces massiliensis Strain 4401292T

C. Robert, D. Raoult, V. Roux, 2012, Journal of bacteriology.

Polyphasic Analysis of a Middle Ages Coprolite Microbiota, Belgium

C. Robert, M. Drancourt, S. Appelt, 2014, PloS one.

Draft genome sequences of Terra1 and Terra2 viruses, new members of the family Mimiviridae isolated from soil.

C. Robert, D. Raoult, B. La Scola, 2014, Virology.

Viruses with More Than 1,000 Genes: Mamavirus, a New Acanthamoeba polyphaga mimivirus Strain, and Reannotation of Mimivirus Genes

E. Koonin, C. Robert, S. Shabalina, 2011, Genome biology and evolution.

Viruses with more than 1000 genes: Mamavirus, a new Acanthamoeba castellanii mimivirus 3 strain, and reannotation of mimivirus genes 4 5 Short title: Mamavirus, a new Mimivirus strain 6 7

E. Koonin, C. Robert, S. Shabalina, 2011 .

Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15.

J. Weissenbach, C. Robert, F. Bihl, 2001, Genomics.

Human pegivirus isolates characterized by deep sequencing from hepatitis C virus‐RNA and human immunodeficiency virus‐RNA–positive blood donations, France

C. Robert, D. Raoult, P. Fournier, 2018, Journal of medical virology.

Draft Genome Sequence of a Human-Associated Isolate of Methanobrevibacter arboriphilicus, the Lowest-G+C-Content Archaeon

C. Robert, D. Raoult, M. Drancourt, 2014, Genome Announcements.

Complete genome sequence of Courdo11 virus, a member of the family Mimiviridae

C. Robert, D. Raoult, B. La Scola, 2013, Virus Genes.

Genomic Analysis of Burkholderia And Rhodococcus equi Bacteriophages

C. Robert, Orchard, 2011 .

Complete Genome Sequence of Borrelia crocidurae

Didier Raoult, Sven Bergström, Michel Drancourt, 2012, Journal of bacteriology.

Genome Sequence of Borrelia crocidurae Strain 03-02, a Clinical Isolate from Senegal

C. Robert, D. Raoult, M. Drancourt, 2014, Genome Announcements.

Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5

C. Robert, D. Raoult, P. Fournier, 2016, New microbes and new infections.

Draft Genome Sequence of Mycobacterium boenickei CIP 107829

C. Robert, M. Drancourt, A. Levasseur, 2017, Genome Announcements.

Draft Genome Sequence of Mycobacterium cosmeticum DSM 44829

C. Robert, D. Raoult, M. Drancourt, 2014, Genome Announcements.

Microvirga massiliensis sp. nov., the human commensal with the largest genome

C. Robert, D. Raoult, P. Fournier, 2016, MicrobiologyOpen.

Rise of Microbial Culturomics: Noncontiguous Finished Genome Sequence and Description of Beduini massiliensis gen. nov., sp. nov.

C. Robert, D. Raoult, P. Fournier, 2015, Omics : a journal of integrative biology.

Noncontiguous finished genome sequence and description of Planococcus massiliensis sp. nov., a moderately halophilic bacterium isolated from the human gut

C. Robert, D. Raoult, P. Fournier, 2015, New microbes and new infections.

Noncontiguous finished genome sequence and description of Virgibacillus massiliensis sp. nov., a moderately halophilic bacterium isolated from human gut

C. Robert, D. Raoult, P. Fournier, 2015, New microbes and new infections.

Non-contiguous finished genome sequence and description of Fenollaria massiliensis gen. nov., sp. nov., a new genus of anaerobic bacterium

C. Robert, D. Raoult, B. La Scola, 2014, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Bacillus massilioanorexius sp. nov.

C. Robert, D. Raoult, P. Fournier, 2013, Standards in genomic sciences.

Draft Genome Sequence of Necropsobacter rosorum Strain P709T

C. Robert, D. Raoult, P. Fournier, 2014, Genome Announcements.

Draft Genome Sequence of Mycobacterium asiaticum Strain DSM 44297

C. Robert, D. Raoult, M. Drancourt, 2014, Genome Announcements.

Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara

C. Robert, C. Desnues, D. Raoult, 2012, The ISME Journal.

Characterization of a novel Gram‐stain‐positive anaerobic coccus isolated from the female genital tract: Genome sequence and description of Murdochiella vaginalis sp. nov.

C. Robert, D. Raoult, P. Fournier, 2018, MicrobiologyOpen.

Draft Genome Sequence of Mycobacterium tuberculosis Strain MT11, Which Represents a New Lineage

C. Robert, M. Drancourt, C. Michelle, 2015, Genome Announcements.

Noncontiguous Genome Sequence of Mycobacterium septicum Strain DSM 44393T

C. Robert, D. Raoult, M. Drancourt, 2013, Genome Announcements.

Draft Genome Sequence of Mycobacterium colombiense

C. Robert, M. Drancourt, A. Levasseur, 2017, Genome Announcements.

Comparison of a Modern and Fossil Pithovirus Reveals Its Genetic Conservation and Evolution

C. Robert, D. Raoult, B. La Scola, 2016, Genome biology and evolution.

Samba virus: a novel mimivirus from a giant rain forest, the Brazilian Amazon

C. Robert, D. Raoult, B. La Scola, 2014, Virology Journal.

Sediminibacillus massiliensis sp. nov., a moderately halophilic, Gram-positive bacterium isolated from a stool sample of a young Senegalese man

C. Robert, D. Raoult, P. Fournier, 2018, Antonie van Leeuwenhoek.

The genome of Coxiella burnetii Z3055, a clone linked to the Netherlands Q fever outbreaks, provides evidence for the role of drift in the emergence of epidemic clones.

C. Robert, D. Raoult, M. Million, 2014, Comparative immunology, microbiology and infectious diseases.

Draft Genome Sequence of Mycobacterium interjectum Strain ATCC 51457T

C. Robert, M. Drancourt, A. Levasseur, 2016, Genome Announcements.

Complete genome sequence and description of Lactococcus garvieae M14 isolated from Algerian fermented milk

C. Robert, D. Raoult, E. Angelakis, 2016, New microbes and new infections.

Draft Genome Sequence of Mycobacterium europaeum Strain CSUR P1344

C. Robert, D. Raoult, M. Drancourt, 2015, Genome Announcements.

Draft Genome Sequence of Mycobacterium lentiflavum CSUR P1491

C. Robert, D. Raoult, M. Drancourt, 2015, Genome Announcements.

Draft Genome Sequence of Mycobacterium tuberculosis Strain MT43, a Representative of the Manu2 Genotype

C. Robert, M. Drancourt, C. Michelle, 2015, Genome Announcements.

Draft Genome Sequence of Mycobacterium farcinogenes NCTC 10955

C. Robert, D. Raoult, M. Drancourt, 2014, Genome Announcements.

Genome Sequence of Legionella tunisiensis Strain LegMT, a New Legionella Species Isolated from Hypersaline Lake Water

C. Robert, D. Raoult, B. La Scola, 2012, Journal of bacteriology.

Genome Sequence of Rickettsia conorii subsp. caspia, the Agent of Astrakhan Fever

C. Robert, D. Raoult, P. Fournier, 2012, Journal of bacteriology.

Sequence and Annotation of Rickettsia sibirica sibirica Genome

C. Robert, D. Raoult, P. Fournier, 2012, Journal of bacteriology.

Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample

C. Robert, D. Raoult, J. Lagier, 2013, European Journal of Clinical Microbiology & Infectious Diseases.

‘Cellulomonas timonensis’ sp. nov., taxonogenomics description of a new bacterial species isolated from human gut

C. Robert, D. Raoult, P. Fournier, 2018, New microbes and new infections.

Rickettsia felis, from Culture to Genome Sequencing

J. Claverie, C. Robert, D. Raoult, 2005, Annals of the New York Academy of Sciences.

Microbial Culturomics to Map Halophilic Bacterium in Human Gut: Genome Sequence and Description of Oceanobacillus jeddahense sp. nov.

C. Robert, D. Raoult, P. Fournier, 2016, Omics : a journal of integrative biology.

Noncontiguous fi nished genome sequence and description of Nocardioides massiliensis sp . nov . GD 13

C. Robert, D. Raoult, P. Fournier, 2016 .

Genome Sequence of Bartonella rattimassiliensis, a Bacterium Isolated from European Rattus norvegicus

C. Robert, D. Raoult, J. Rolain, 2012, Journal of bacteriology.

Draft genome sequence of Coxiella burnetii Dog Utad, a strain isolated from a dog-related outbreak of Q fever

C. Robert, D. Raoult, T. Marrie, 2014, New microbes and new infections.

The Genome of Borrelia recurrentis, the Agent of Deadly Louse-Borne Relapsing Fever, Is a Degraded Subset of Tick-Borne Borrelia duttonii

Jean-Michel Claverie, Magali Lescot, Guillaume Blanc, 2008, PLoS genetics.

Kingella kingae KK247, an Atypical Pulsed-Field Gel Electrophoresis Clone A Strain

C. Robert, D. Raoult, P. Yagupsky, 2014, Genome Announcements.

Divergent Gemycircularvirus in HIV-Positive Blood, France

C. Robert, D. Raoult, P. Fournier, 2015, Emerging infectious diseases.

Sediminibacillus massiliensis sp. nov., a moderately halophilic, Gram-positive bacterium isolated from a stool sample of a young Senegalese man

C. Robert, P. Fournier, C. Sokhna, 2018, Antonie van Leeuwenhoek.

Risungbinella massiliensis sp. nov., a new member of Thermoactinomycetaceae isolated from human gut

C. Robert, D. Raoult, P. Fournier, 2016, Antonie van Leeuwenhoek.

Development of an efficient spheroplast transformation procedure for S. thermophilus: the use of transfection to define a regeneration medium.

C. Robert, A. Mercenier, D. Romero, 1988, Biochimie.

Conjugative mobilization as an alternative vector delivery system for lactic streptococci

C. Robert, A. Mercenier, D. Romero, 1987, Applied and environmental microbiology.

Draft Genome and Description of Eisenbergiella massiliensis Strain AT11T: A New Species Isolated from Human Feces After Bariatric Surgery

C. Robert, D. Raoult, P. Fournier, 2018, Current Microbiology.

Draft Genome Sequencing of Methanobrevibacter oralis Strain JMR01, Isolated from the Human Intestinal Microbiota

C. Robert, D. Raoult, M. Drancourt, 2014, Genome Announcements.

Non-contiguous finished genome sequence and description of Gorillibacterium massiliense gen. nov, sp. nov., a new member of the family Paenibacillaceae

C. Robert, D. Raoult, P. Fournier, 2014, Standards in genomic sciences.

Treponema species enrich the gut microbiota of traditional rural populations but are absent from urban individuals

C. Robert, D. Raoult, C. Sokhna, 2018, New microbes and new infections.

Gut microbiome and dietary patterns in different Saudi populations and monkeys

C. Robert, D. Raoult, E. Angelakis, 2016, Scientific Reports.

A panoramic view of gene expression in the human kidney

Jean-Christophe Aude, Patrick Wincker, J. Weissenbach, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Non-contiguous-Finished Genome Sequence and Description of Paenibacillus camerounensis sp. nov.

C. Robert, D. Raoult, P. Fournier, 2015, Microbial Ecology.

Non-contiguous finished genome sequence and description of Paenibacillus gorillae sp. nov.

C. Robert, D. Raoult, P. Fournier, 2014, Standards in genomic sciences.

Faustovirus-Like Asfarvirus in Hematophagous Biting Midges and Their Vertebrate Hosts

C. Robert, C. Desnues, D. Raoult, 2015, Front. Microbiol..

High-quality genome sequence and description of Paenibacillus dakarensis sp. nov.

C. Robert, D. Raoult, P. Fournier, 2016, New microbes and new infections.

Non-contiguous finished genome sequence and description of Bacillus massiliogorillae sp. nov.

C. Robert, D. Raoult, P. Fournier, 2013, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Clostridium dakarense sp. nov.

C. Robert, D. Raoult, P. Fournier, 2013, Standards in genomic sciences.

Genome sequence and description of Timonella senegalensis gen. nov., sp. nov., a new member of the suborder Micrococcinae

C. Robert, D. Raoult, P. Fournier, 2013, Standards in genomic sciences.

Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample

C. Robert, D. Raoult, J. Lagier, 2013, European Journal of Clinical Microbiology & Infectious Diseases.

The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics

C. Robert, D. Raoult, G. Dubourg, 2013, European Journal of Clinical Microbiology & Infectious Diseases.

Non-contiguous finished genome sequence and description of Kurthia massiliensis sp. nov.

C. Robert, D. Raoult, V. Roux, 2012, Standards in genomic sciences.

Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov.

C. Robert, D. Raoult, P. Fournier, 2012, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov.

C. Robert, D. Raoult, P. Fournier, 2012, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Anaerococcus vaginalis

C. Robert, D. Raoult, P. Fournier, 2012, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov.

C. Robert, D. Raoult, P. Fournier, 2012, Standards in genomic sciences.

Non-contiguous finished genome sequence of Corynebacterium timonense type strain 5401744T

C. Robert, D. Raoult, V. Roux, 2014, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Corynebacterium jeddahense sp. nov.

C. Robert, D. Raoult, P. Fournier, 2014, Standards in genomic sciences.

Corynebacterium jeddahense

C. Robert, D. Raoult, P. Fournier, 2014 .

Genome Sequence of Coxiella burnetii 109, a Doxycycline-Resistant Clinical Isolate

C. Robert, D. Raoult, J. Rolain, 2012, Journal of bacteriology.

Analysis of the lacZ sequences from two Streptococcus thermophilus strains: comparison with the Escherichia coli and Lactobacillus bulgaricus beta-galactosidase sequences.

C. Robert, G. Lenzen, A. Mercenier, 1991, Journal of general microbiology.

The virophage as a unique parasite of the giant mimivirus

Didier Raoult, Eugene Koonin, Ghislain Fournous, 2008, Nature.

A Giant Virus in Amoebae

Jean-Michel Claverie, Didier Raoult, Bernard La Scola, 2003, Science.

Draft Genome Sequence of Coxiella burnetii Strain Cb196, an Agent of Endocarditis in Saudi Arabia

C. Robert, D. Raoult, P. Fournier, 2014, Genome Announcements.

Genome sequence and description of Alistipes senegalensis sp. nov.

C. Robert, D. Raoult, P. Fournier, 2012, Standards in genomic sciences.

Clostridium butyricum Strains and Dysbiosis Linked to Necrotizing Enterocolitis in Preterm Neonates.

C. Robert, D. Raoult, B. La Scola, 2015, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Dental pulp as a source of low-contaminated DNA.

C. Robert, D. Raoult, M. Drancourt, 2017, Microbial pathogenesis.

A haplotype map of the human genome The International HapMap Consortium

Li, Yi, Jun, 2005 .

Yersinia pestis halotolerance illuminates plague reservoirs

J. Gaudart, C. Robert, D. Raoult, 2017, Scientific Reports.

Genomic analysis of three African strains of Bacillus anthracis demonstrates that they are part of the clonal expansion of an exclusively pathogenic bacterium

C. Robert, D. Raoult, B. La Scola, 2014, New microbes and new infections.

Drancourtella massiliensis gen. nov., sp. nov. isolated from fresh healthy human faecal sample from South France

C. Robert, D. Raoult, P. Fournier, 2016, New microbes and new infections.

Comparison of the gut microbiota of obese individuals from different geographic origins

C. Robert, D. Raoult, E. Angelakis, 2018, New microbes and new infections.

Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition

Vincent Lombard, Bernard Henrissat, Fabrice Armougom, 2016, Scientific Reports.

Comparison of the gut microbiota of people in France and Saudi Arabia

C. Robert, D. Raoult, E. Angelakis, 2015, Nutrition & Diabetes.

Gut Bacteria Missing in Severe Acute Malnutrition, Can We Identify Potential Probiotics by Culturomics?

C. Robert, D. Raoult, C. Sokhna, 2017, Front. Microbiol..

Variations of Plasmid Content in Rickettsia felis

C. Robert, D. Raoult, P. Fournier, 2008, PloS one.

The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics

C. Robert, D. Raoult, G. Dubourg, 2013, European Journal of Clinical Microbiology & Infectious Diseases.

Gut microbiota associated with HIV infection is significantly enriched in bacteria tolerant to oxygen

C. Robert, D. Raoult, P. Brouqui, 2016, BMJ open gastroenterology.

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.

Patrick Wincker, Philippe Marlière, Claudine Médigue, 2004, Nucleic acids research.

Genome Sequence of “Rickettsia sibirica subsp. mongolitimonae”

C. Robert, D. Raoult, P. Fournier, 2012, Journal of bacteriology.

Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome.

J. Claverie, H. Ogata, C. Robert, 2007, Genome research.

Non-contiguous finished genome sequence and description of Gorillibacterium massiliense gen. nov, sp. nov., a new member of the family Paenibacillaceae

C. Robert, D. Raoult, P. Fournier, 2014, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Bartonella florenciae sp. nov.

C. Robert, D. Raoult, P. Fournier, 2013, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Halopiger djelfamassiliensis sp. nov.

C. Robert, C. Desnues, D. Raoult, 2013, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp. nov., a new species of anaerobic bacterium

C. Robert, D. Raoult, B. La Scola, 2013, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Kallipyga massiliensis gen. nov., sp. nov., a new member of the family Clostridiales Incertae Sedis XI

C. Robert, D. Raoult, P. Fournier, 2013, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Bartonella senegalensis sp. nov.

C. Robert, D. Raoult, P. Fournier, 2013, Standards in genomic sciences.

Non contiguous-finished genome sequence and description of Enterobacter massiliensis sp. nov.

C. Robert, D. Raoult, P. Fournier, 2013, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov.

C. Robert, D. Raoult, P. Fournier, 2012, Standards in genomic sciences.

Insight into cross-talk between intra-amoebal pathogens

C. Robert, D. Raoult, P. Fournier, 2011, BMC Genomics.

Non-contiguous finished genome sequence and description of Anaerococcus provenciensis sp. nov.

C. Robert, D. Raoult, B. La Scola, 2014, Standards in genomic sciences.

Noncontiguous finished genome sequence and description of Nocardioides massiliensis sp. nov. GD13T

C. Robert, D. Raoult, P. Fournier, 2016, New microbes and new infections.

Noncontiguous finished genome sequence and description of Gabonia massiliensis gen. nov., sp. nov.

C. Robert, D. Raoult, P. Fournier, 2015, New microbes and new infections.

Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11T, the type strain of Paenibacillus antibioticophila

C. Robert, D. Raoult, P. Fournier, 2015, New microbes and new infections.

Virgibacillus senegalensis sp. nov., a new moderately halophilic bacterium isolated from human gut

C. Robert, D. Raoult, C. Sokhna, 2015, New microbes and new infections.

Non-contiguous finished genome sequence and description of Clostridium saudii sp. nov

C. Robert, D. Raoult, P. Fournier, 2014, Standards in genomic sciences.

Non contiguous-finished genome sequence and description of Clostridium jeddahense sp. nov.

C. Robert, D. Raoult, P. Fournier, 2014, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Bacteroides neonati sp. nov., a new species of anaerobic bacterium

C. Robert, D. Raoult, B. La Scola, 2014, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Kurthia senegalensis sp. nov.

C. Robert, D. Raoult, V. Roux, 2014, Standards in genomic sciences.

Non contiguous-finished genome sequence and description of Enorma timonensis sp. nov.

C. Robert, D. Raoult, P. Fournier, 2014, Standards in genomic sciences.

Fenollaria massiliensis gen. nov., sp. nov

C. Robert, D. Raoult, B. La Scola, 2014 .

Non-contiguous finished genome sequence and description of Alistipes ihumii sp. nov.

C. Robert, D. Raoult, P. Fournier, 2012, Standards in genomic sciences.

Non-contiguous finished genome sequence and description of Oceanobacillus massiliensis sp. nov.

C. Robert, D. Raoult, V. Roux, 2013, Standards in genomic sciences.

Non contiguous-finished genome sequence and description of Peptoniphilus obesi sp. nov.

C. Robert, D. Raoult, P. Fournier, 2013, Standards in genomic sciences.

Non contiguous-finished genome sequence and description of Peptoniphilus grossensis sp. nov.

C. Robert, D. Raoult, P. Fournier, 2012, Standards in genomic sciences.

Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms

Eugene V. Koonin, Natalya Yutin, Michael G. Rossmann, 2009, Proceedings of the National Academy of Sciences.

Host-Associated Metagenomics: A Guide to Generating Infectious RNA Viromes

R. Charrel, C. Robert, C. Desnues, 2015, PloS one.

Characterization of Viral Communities of Biting Midges and Identification of Novel Thogotovirus Species and Rhabdovirus Genus

C. Robert, C. Desnues, D. Raoult, 2016, Viruses.

Real-Time Sequencing To Decipher the Molecular Mechanism of Resistance of a Clinical Pan-Drug-Resistant Acinetobacter baumannii Isolate from Marseille, France

C. Robert, D. Raoult, J. Rolain, 2012, Antimicrobial Agents and Chemotherapy.

Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

C. Robert, P. Fournier, E. Angelakis, 2018, BMC Microbiology.

A Metagenomic Investigation of the Duodenal Microbiota Reveals Links with Obesity

C. Robert, B. Henrissat, D. Raoult, 2015, PloS one.

Rapid comparative genomic analysis for clinical microbiology: the Francisella tularensis paradigm.

C. Robert, D. Raoult, S. Audic, 2008, Genome research.

A novel bi‐allelic loss‐of‐function mutation in STIM1 expands the phenotype of STIM1‐related diseases

C. Robert, A. Mégarbané, N. Lévy, 2020, Clinical genetics.

Kaumoebavirus, a New Virus That Clusters with Faustoviruses and Asfarviridae

C. Robert, D. Raoult, B. La Scola, 2016, Viruses.

First isolation of Mimivirus in a patient with pneumonia.

C. Robert, D. Raoult, B. La Scola, 2013, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Pan-Genome Analysis of Brazilian Lineage A Amoebal Mimiviruses

C. Robert, B. La Scola, E. Kroon, 2015, Viruses.

Genome Sequence of Rickettsia conorii subsp. indica, the Agent of Indian Tick Typhus

C. Robert, D. Raoult, P. Fournier, 2012, Journal of bacteriology.

Staphylococcus aureus subsp. anaerobius strain ST1464 genome sequence

Michel Drancourt, C. Robert, M. Drancourt, 2013, Standards in genomic sciences.

Samba virus: a novel mimivirus from a giant rain forest, the Brazilian Amazon

C. Robert, D. Raoult, B. La Scola, 2014, Virology Journal.

Complete genome sequence of Courdo11 virus, a member of the family Mimiviridae

C. Robert, D. Raoult, B. La Scola, 2014, Virus Genes.

E. Koonin, M. Rossmann, C. Robert, 2012, Genome biology and evolution.

Mimivirus shows dramatic genome reduction after intraamoebal culture

Bernard Henrissat, Didier Raoult, Ghislain Fournous, 2011, Proceedings of the National Academy of Sciences.

Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibiotics.

C. Robert, D. Raoult, P. Brouqui, 2014, International journal of antimicrobial agents.

Isolation and characterization of Kingella negevensis sp. nov., a novel Kingella species detected in a healthy paediatric population.

J. Schrenzel, C. Robert, D. Raoult, 2017, International journal of systematic and evolutionary microbiology.

Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities.

C. Médigue, C. Robert, D. Raoult, 2010, Genome research.

Detection of novel RNA viruses from free-living gorillas, Republic of the Congo: genetic diversity of picobirnaviruses

C. Robert, C. Desnues, D. Raoult, 2018, Virus Genes.

Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.

W Ansorge, H Erfle, G Kauer, 2000, Nature.

Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm

C. Robert, D. Raoult, P. Fournier, 2015, Biology Direct.

Conditional suicide system of Escherichia coli released into soil that uses the Bacillus subtilis sacB gene

C. Robert, P. Normand, G. Recorbet, 1993, Applied and environmental microbiology.

Sequence of the pig major histocompatibility region containing the classical class I genes

Patrick Chardon, Christine Renard, N. Chiannilkulchai, 2001, Immunogenetics.

Prevotella timonensis

C. Robert, D. Raoult, V. Roux, 2020 .

Mycobacterium ahvazicum sp. nov., the nineteenth species of the Mycobacterium simiae complex

C. Robert, M. Drancourt, A. Levasseur, 2018, Scientific Reports.

Dakarella massiliensis gen. nov., sp. nov., strain ND3T: a new bacterial genus isolated from the female genital tract

C. Robert, D. Raoult, P. Fournier, 2017, New microbes and new infections.

Genome Sequence of the Tick-Borne Pathogen Rickettsia raoultii

C. Robert, D. Raoult, O. Mediannikov, 2016, Genome Announcements.

High-quality genome sequence and description of Bacillus dielmoensis strain FF4T sp. nov.

C. Robert, D. Raoult, P. Fournier, 2015, Standards in genomic sciences.

Non-contiguous finished genome sequence of Prevotella timonensis type strain 4401737T

C. Robert, D. Raoult, V. Roux, 2014, Standards in Genomic Sciences.

Non-contiguous finished genome sequence of Phocaeicola abscessus type strain 7401987T

C. Robert, D. Raoult, V. Roux, 2013, Standards in genomic sciences.

Deciphering Genomic Virulence Traits of a Staphylococcus epidermidis Strain Causing Native-Valve Endocarditis

C. Robert, D. Raoult, P. Fournier, 2013, Journal of Clinical Microbiology.

Genome Sequence of Reyranella massiliensis, a Bacterium Associated with Amoebae

C. Robert, D. Raoult, B. La Scola, 2012, Journal of bacteriology.

Genome Sequence of Diplorickettsia massiliensis, an Emerging Ixodes ricinus-Associated Human Pathogen

C. Robert, D. Raoult, P. Fournier, 2012, Journal of bacteriology.

Genome Analysis of Minibacterium massiliensis Highlights the Convergent Evolution of Water-Living Bacteria

Jean-Michel Claverie, Stéphane Audic, Didier Raoult, 2007, PLoS genetics.

Phylogenomic Analysis of Odyssella thessalonicensis Fortifies the Common Origin of Rickettsiales, Pelagibacter ubique and Reclimonas americana Mitochondrion

C. Robert, D. Raoult, Mohammed-Amine Madoui, 2011, PloS one.

Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction

C. Robert, D. Raoult, S. Audic, 2009, BMC Genomics.

Saudi Moumouvirus, the First Group B Mimivirus Isolated from Asia

C. Robert, D. Raoult, B. La Scola, 2016, Front. Microbiol..

The Genome Sequence of Rickettsia felis Identifies the First Putative Conjugative Plasmid in an Obligate Intracellular Parasite

J. Claverie, H. Ogata, C. Robert, 2005, PLoS biology.

Draft Genome Sequence of Mycobacterium acapulcensis Strain CSURP1424

C. Robert, M. Drancourt, N. Rascovan, 2016, Genome Announcements.

Conditional Suicide SystemofEscherichia coli Released into SoilThatUsestheBacillus subtilis sacBGene

C. Robert, A. Givaudan, B. Kudla, 1993 .

Molecular Studies Neglect Apparently Gram-Negative Populations in the Human Gut Microbiota

C. Robert, D. Raoult, L. Papazian, 2013, Journal of Clinical Microbiology.

Gut Microbiota Gram-Negative Populations in the Human Molecular Studies Neglect Apparently

C. Robert, L. Papazian, D. Musso, 2013 .

Multi-spacer typing as an effective method to distinguish the clonal lineage of Clostridium butyricum strains isolated from stool samples during a series of necrotizing enterocolitis cases.

C. Robert, D. Raoult, B. La Scola, 2017, The Journal of hospital infection.

Whole-genome assembly of Akkermansia muciniphila sequenced directly from human stool

C. Robert, D. Raoult, J. Rolain, 2015, Biology Direct.

Non-contiguous genome sequence of Mycobacterium simiae strain DSM 44165T

C. Robert, D. Raoult, M. Drancourt, 2013, Standards in genomic sciences.

High-level colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment.

C. Robert, D. Raoult, L. Papazian, 2013, International journal of antimicrobial agents.

Use of Genome Selected Repeated Sequences Increases the Sensitivity of PCR Detection of Tropheryma whipplei

C. Robert, D. Raoult, P. Fournier, 2004, Journal of Clinical Microbiology.

Genomic Exploration of the Hemiascomycetous Yeasts: 11. Kluyveromyces lactis

M. Bolotin-Fukuhara, P. Wincker, F. Artiguenave, 2000, FEBS letters.

Complete Genome Sequence of Methanomassiliicoccus luminyensis, the Largest Genome of a Human-Associated Archaea Species

C. Robert, D. Raoult, M. Drancourt, 2012, Journal of bacteriology.

Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies

C. Robert, B. Henrissat, D. Raoult, 2016, Scientific Reports.

Genome Sequence of Lactobacillus ingluviei, a Bacterium Associated with Weight Gain in Animals

C. Robert, D. Raoult, V. Merhej, 2012, Journal of bacteriology.

Fournierella massiliensis gen. nov., sp. nov., a new human-associated member of the family Ruminococcaceae.

C. Robert, D. Raoult, A. Levasseur, 2017, International journal of systematic and evolutionary microbiology.

Microbial Culturomics Broadens Human Vaginal Flora Diversity: Genome Sequence and Description of Prevotella lascolaii sp. nov. Isolated from a Patient with Bacterial Vaginosis.

C. Robert, D. Raoult, P. Fournier, 2018, Omics.

Draft Genome Sequence of Kingella negevensis SW7208426, the First European Strain of K. negevensis Isolated from a Healthy Child in Switzerland

J. Schrenzel, C. Robert, D. Raoult, 2017, Genome Announcements.

Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

C. Robert, D. Raoult, P. Fournier, 2018, BMC Microbiology.

The proof of concept that culturomics can be superior to metagenomics to study atypical stool samples

C. Robert, D. Raoult, G. Dubourg, 2013, European Journal of Clinical Microbiology and Infectious Diseases.

Non-contiguous finished genome sequence and description of Fenollaria massiliensis gen. nov., sp. nov., a new genus of anaerobic bacterium

C. Robert, D. Raoult, B. La Scola, 2014, Standards in Genomic Sciences.

“Mycobacterium massilipolynesiensis” sp. nov., a rapidly-growing mycobacterium of medical interest related to Mycobacterium phlei

C. Robert, M. Drancourt, C. Michelle, 2017, Scientific Reports.

Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut

C. Robert, D. Raoult, P. Fournier, 2015, Standards in genomic sciences.

Draft Genome Sequence of Mycobacterium austroafricanum DSM 44191

C. Robert, D. Raoult, M. Drancourt, 2014, Genome Announcements.

Draft Genome Sequence of Mycobacterium triplex DSM 44626

C. Robert, D. Raoult, M. Drancourt, 2014, Genome Announcements.

Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencing

J. Sarles, C. Robert, D. Raoult, 2009, European Journal of Clinical Microbiology & Infectious Diseases.

Draft Genome Sequence of Mycobacterium mucogenicum Strain CSUR P2099

C. Robert, M. Drancourt, N. Rascovan, 2015, Genome Announcements.

Draft Genome Sequence of Mycobacterium mucogenicum Strain CSUR P 2099

C. Robert, M. Drancourt, N. Rascovan, 2015 .

Draft Genome Sequence of Mycobacterium peregrinum Strain CSUR P2098

C. Robert, M. Drancourt, N. Rascovan, 2015, Genome Announcements.

Draft Genome Sequence of Mycobacterium neworleansense Strain ATCC 49404T

C. Robert, M. Drancourt, Aurélia Caputo, 2015, Genome Announcements.

Genomic Comparison of Rickettsia helvetica and Other Rickettsia Species

C. Robert, D. Raoult, P. Fournier, 2012, Journal of bacteriology.

Oceanobacillus timonensis sp. nov. and Oceanobacillus senegalensis sp. nov., two new moderately halophilic, Gram-stain positive bacteria isolated from stools sample of healthy young Senegalese

C. Robert, D. Raoult, P. Fournier, 2018, Antonie van Leeuwenhoek.

Oceanobacillus timonensis sp. nov. and Oceanobacillus senegalensis sp. nov., two new moderately halophilic, Gram-stain positive bacteria isolated from stools sample of healthy young Senegalese

C. Robert, P. Fournier, C. Sokhna, 2018, Antonie van Leeuwenhoek.

Partial Disruption of Translational and Posttranslational Machinery Reshapes Growth Rates of Bartonella birtlesii

C. Robert, D. Raoult, J. Rolain, 2013, mBio.

Genome Sequence of Bartonella rattaustraliani, a Bacterium Isolated from an Australian Rat

C. Robert, D. Raoult, J. Rolain, 2012, Journal of bacteriology.

Genome Sequence of Bartonella birtlesii, a Bacterium Isolated from Small Rodents of the Genus Apodemus

C. Robert, D. Raoult, P. Fournier, 2012, Journal of bacteriology.

Genomic Analysis of Rickettsia japonica Strain YHT

C. Robert, D. Raoult, P. Fournier, 2012, Journal of bacteriology.

Non-contiguous-Finished Genome Sequence and Description of Paenibacillus camerounensis sp. nov.

C. Robert, D. Raoult, P. Fournier, 2016, Microbial Ecology.

Non-contiguous finished genome sequence and description of Paenibacillus gorillae sp. nov.

C. Robert, D. Raoult, P. Fournier, 2014, Standards in genomic sciences.

Microbial culturomics: paradigm shift in the human gut microbiome study.

E. Koonin, C. Robert, B. Scola, 2012, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

High-quality genome sequence and description of Bacillus dielmoensis strain FF4T sp. nov.

C. Robert, P. Fournier, C. Lo, 2015, Standards in Genomic Sciences.

Human pegivirus isolates characterized by deep sequencing from hepatitis C virus‐RNA and human immunodeficiency virus‐RNA–positive blood donations, France

C. Robert, P. Fournier, P. Biagini, 2018, Journal of medical virology.

Rapid comparative genomic analysis for clinical microbiology: the Francisella tularensis paradigm.

C. Robert, S. Audic, M. Drancourt, 2008, Genome research.

Draft Genome and Description of Eisenbergiella massiliensis Strain AT11T: A New Species Isolated from Human Feces After Bariatric Surgery

C. Robert, P. Fournier, F. Bittar, 2018, Current Microbiology.

Description of Gabonibacter massiliensis gen. nov., sp. nov., a New Member of the Family Porphyromonadaceae Isolated from the Human Gut Microbiota

C. Robert, P. Fournier, S. Khelaifia, 2016, Current Microbiology.

Risungbinella massiliensis sp. nov., a new member of Thermoactinomycetaceae isolated from human gut

C. Robert, P. Fournier, G. Dubourg, 2016, Antonie van Leeuwenhoek.