T. Doerks

发表

Initial sequencing and analysis of the human genome.

J. V. Moran, V. J. Pollara, D. Haussler, 2001, Nature.

Protein domain analysis in the era of complete genomes

P. Bork, R. Copley, T. Doerks, 2002, FEBS letters.

STRING 8—a global view on proteins and their functional interactions in 630 organisms

Christian von Mering, Peer Bork, Jean Muller, 2008, Nucleic Acids Res..

Systematic Association of Genes to Phenotypes by Genome and Literature Mining

Peer Bork, Carolina Perez-Iratxeta, Lars J Jensen, 2005, PLoS biology.

Annotation of the M. tuberculosis Hypothetical Orfeome: Adding Functional Information to More than Half of the Uncharacterized Proteins

Peer Bork, Pablo Minguez, Tobias Doerks, 2012, PloS one.

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum

P. Bork, A. Gavin, T. Doerks, 2014, Nucleic acids research.

Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing.

Peer Bork, Elisa Izaurralde, Tobias Doerks, 2007, Genes & development.

Orthology prediction methods: A quality assessment using curated protein families

P. Bork, T. Doerks, J. Muller, 2011, BioEssays : news and reviews in molecular, cellular and developmental biology.

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

B. Snel, P. Bork, T. Doerks, 2006, Science.

Transcriptome Complexity in a Genome-Reduced Bacterium

M. Suyama, P. Bork, M. Arumugam, 2009, Science.

mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes.

P. Bork, T. Doerks, A. Stark, 2006, Genes & development.

Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921))

Ronald W. Davis, J. V. Moran, V. J. Pollara, 2001 .

Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

S. Tringe, P. Bork, J. Raes, 2007, Science.

Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

Yan P. Yuan, P Bork, M A Andrade, 2000, Nucleic acids research.

Discovering Functional Novelty in Metagenomes: Examples from Light-Mediated Processes

Peer Bork, Ivica Letunic, Jeroen Raes, 2008, Journal of bacteriology.

Protein annotation: detective work for function prediction.

A Bairoch, P Bork, P. Bork, 1998, Trends in genetics : TIG.

Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer

Peer Bork, Jeroen Raes, Christopher J. Creevey, 2011, PloS one.

Systematic identification of novel protein domain families associated with nuclear functions.

Peer Bork, Tobias Doerks, Richard R Copley, 2002, Genome research.

A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based Validation

Peer Bork, Tobias Doerks, Tomas Larsson, 2014, PloS one.

REF, an evolutionary conserved family of hnRNP-like proteins, interacts with TAP/Mex67p and participates in mRNA nuclear export.

P. Bork, B. Séraphin, T. Doerks, 2000, RNA.

GRAM, a novel domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.

P. Bork, T. Doerks, M. Strauss, 2000, Trends in biochemical sciences.

Experimental characterization of the human non-sequence-specific nucleic acid interactome

P. Bork, G. Superti-Furga, K. Bennett, 2013, Genome Biology.

A Nitrile Hydratase in the Eukaryote Monosiga brevicollis

P. Bork, J. Raes, T. Doerks, 2008, PloS one.

BSD: a novel domain in transcription factors and synapse-associated proteins.

P. Bork, T. Doerks, E. Buchner, 2002, Trends in biochemical sciences.

Metagenomics

B. Snel, M. Arumugam, T. Nielsen, 2019, Nature biotechnology.

Prokaryotic ancestry and gene fusion of a dual localized peroxiredoxin in malaria parasites

P. Bork, T. Doerks, J. Huerta-Cepas, 2015, Microbial cell.

Copy number variation analysis and targeted NGS in 77 families with suspected Lynch syndrome reveals novel potential causative genes

P. Bork, T. Doerks, S. Moebus, 2018, International journal of cancer.

The Spir actin organizers are involved in vesicle transport processes

P. Bork, R. Pepperkok, T. Doerks, 2001, Current Biology.

CASH--a beta-helix domain widespread among carbohydrate-binding proteins.

P. Bork, R. Copley, R. Russell, 2002, TIBS -Trends in Biochemical Sciences. Regular ed.

DCD – a novel plant specific domain in proteins involved in development and programmed cell death

Peer Bork, Tobias Doerks, Raimund Tenhaken, 2005, BMC Bioinformatics.

Functional clues for hypothetical proteins based on genomic context analysis in prokaryotes.

Peer Bork, Tobias Doerks, Christian von Mering, 2004, Nucleic acids research.

Global analysis of bacterial transcription factors to predict cellular target processes.

Peer Bork, Tobias Doerks, Christian von Mering, 2004, Trends in genetics : TIG.

A Computational Screen for Type I Polyketide Synthases in Metagenomics Shotgun Data

Peer Bork, Christopher J. Creevey, Tobias Doerks, 2008, PloS one.

SMART 4.0: towards genomic data integration

Peer Bork, Francesca D. Ciccarelli, Ivica Letunic, 2004, Nucleic Acids Res..

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

Damian Szklarczyk, Christian von Mering, Peer Bork, 2011, Nucleic Acids Res..

SMART 7: recent updates to the protein domain annotation resource

Peer Bork, Ivica Letunic, Tobias Doerks, 2011, Nucleic Acids Res..

SMART 6: recent updates and new developments

Peer Bork, Ivica Letunic, Tobias Doerks, 2008, Nucleic Acids Res..

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

Damian Szklarczyk, Christian von Mering, Andrea Franceschini, 2010, Nucleic Acids Res..

Recent improvements to the SMART domain-based sequence annotation resource

Peer Bork, Francesca D. Ciccarelli, Ivica Letunic, 2002, Nucleic Acids Res..

SMART: a web-based tool for the study of genetically mobile domains

Peer Bork, Chris P. Ponting, Jörg Schultz, 2000, Nucleic Acids Res..

SMART: recent updates, new developments and status in 2015

Peer Bork, Ivica Letunic, Tobias Doerks, 2014, Nucleic Acids Res..

Computational characterization of multiple Gag-like human proteins.

Parantu K. Shah, P. Bork, T. Doerks, 2006, Trends in genetics : TIG.

Homology-based fold predictions for Mycoplasma genitalium proteins.

P Bork, S Sunyaev, P. Bork, 1998, Journal of molecular biology.

Domains in plexins: links to integrins and transcription factors.

B. Snel, P. Bork, P. Bork, 1999, Trends in biochemical sciences.

STRING 7—recent developments in the integration and prediction of protein interactions

Christian von Mering, Peer Bork, Berend Snel, 2006, Nucleic Acids Res..

deadenylase and DCP 1 : DCP 2 decapping complexes mRNA degradation by miRNAs and GW 182 requires both CCR 4 : NOT Material

P. Bork, T. Doerks, A. Stark, 2006 .

AMOP, a protein module alternatively spliced in cancer cells.

P. Bork, T. Doerks, F. Ciccarelli, 2002, Trends in biochemical sciences.

DDT -- a novel domain in different transcription and chromosome remodeling factors.

R. Copley, P. Bork, T. Doerks, 2001, Trends in biochemical sciences.

A 15q24 microdeletion in transient myeloproliferative disease (TMD) and acute megakaryoblastic leukaemia (AMKL) implicates PML and SUMO3 in the leukaemogenesis of TMD/AMKL

P. Bork, J. Korbel, A. Jauch, 2012, British journal of haematology.

Identifying Single Copy Orthologs in Metazoa

Peer Bork, Julie Dawn Thompson, Jean Muller, 2011, PLoS Comput. Biol..

Quantitative assessment of protein function prediction from metagenomics shotgun sequences

J. Raes, L. Jensen, P. Bork, 2007, Proceedings of the National Academy of Sciences.

eggNOG: automated construction and annotation of orthologous groups of genes

Christian von Mering, Peer Bork, Jean Muller, 2007, Nucleic Acids Res..

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

Damian Szklarczyk, Christian von Mering, Peer Bork, 2009, Nucleic Acids Res..

More than 1,000 putative new human signalling proteins revealed by EST data mining

Peer Bork, Chris P. Ponting, Tobias Doerks, 2000, Nature Genetics.

Experimental characterization of the human non-sequence-specific nucleic acid interactome

P. Bork, G. Superti-Furga, K. Bennett, 2013, Genome Biology.

CASH – a β-helix domain widespread among carbohydrate-binding proteins

P. Bork, R. Copley, R. Russell, 2002 .

Prediction of structural domains of TAP reveals details of its interaction with p15 and nucleoporins

M. Suyama, P. Bork, T. Doerks, 2000, EMBO reports.

Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains.

Karl G. Kugler, P. Bork, J. Ellenberg, 2015, Cell reports.

Novel function in light-mediated microbial processes

P. Bork, J. Raes, T. Doerks, 2008 .

Proteome analysis based on motif statistics

Martin Vingron, Pierre Nicodème, T. Doerks, 2002, ECCB.

L27, a novel heterodimerization domain in receptor targeting proteins Lin-2 and Lin-7.

P. Bork, T. Doerks, E. Kamberov, 2000, Trends in biochemical sciences.

Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

S. Tringe, P. Bork, J. Raes, 2007, Science.

Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer

P. Bork, J. Raes, T. Doerks, 2011, PloS one.

Quantitative assessment of protein function prediction from metagenomics shotgun sequences

C. V. Mering, T. Doerks, E. Harrington, 2007, Proceedings of the National Academy of Sciences.