L. McGuffin

发表

Prediction of novel and analogous folds using fragment assembly and fold recognition

D T Jones, J. S. Sodhi, K Bryson, 2005, Proteins.

Predicting metal-binding site residues in low-resolution structural models.

J. S. Sodhi, David T. Jones, K. Bryson, 2004, Journal of molecular biology.

Rapid protein domain assignment from amino acid sequence using predicted secondary structure

David T. Jones, Russell L. Marsden, L. McGuffin, 2002, Protein science : a publication of the Protein Society.

Prediction and functional analysis of native disorder in proteins from the three kingdoms of life.

J. S. Sodhi, David C. Jones, D. T. Jones, 2004, Journal of molecular biology.

Secondary structure prediction with support vector machines

Bernard F. Buxton, Liam J. McGuffin, David T. Jones, 2003, Bioinform..

RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses

Chris I. Jones, Bajuna R. Salehe, L. McGuffin, 2017, PloS one.

The mysterious presence of a 5-methylcytosine oxidase in the Drosophila genome

Thomas L. Dunwell, L. McGuffin, G. Pfeifer, 2013, Cell cycle.

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Jari Björne, Tapio Salakoski, Giorgio Valentini, 2019, Genome Biology.

Toolbox for Protein Structure Prediction.

Daniel B. Roche, Daniel Barry Roche, Liam James McGuffin, 2016, Methods in molecular biology.

In silico Identification and Characterization of Protein-Ligand Binding Sites.

Daniel B. Roche, Daniel Barry Roche, Liam James McGuffin, 2016, Methods in molecular biology.

Methods for the Refinement of Protein Structure 3D Models

L. McGuffin, Recep Adiyaman, 2019, International journal of molecular sciences.

Estimation of model accuracy in CASP13

Arne Elofsson, Karolis Uziela, Björn Wallner, 2019, Proteins.

Prediction of protein-protein and protein-ligand interactions from protein structures

Liam J. McGuffin, Kevin Bryson, J. S. Sodhi, 2005 .

Structural, Functional and Mechanistic Insights Uncover the Fundamental Role of Orphan Connexin62 in Platelets.

Ali H. A. Maghrabi, Chris I. Jones, L. McGuffin, 2020, Blood.

SOcK, MiSTs, MASK and STicKs: the GCKIII (germinal centre kinase III) kinases and their heterologous protein-protein interactions.

L. McGuffin, A. Clerk, P. Sugden, 2013, The Biochemical journal.

In silico identification and three-dimensional modelling of the missense mutation in ADAMTS2 in a sheep flock with dermatosparaxis.

L. McGuffin, L. Monteagudo, L. M. Ferrer, 2015, Veterinary dermatology.

GRID and docking analyses reveal a molecular basis for flavonoid inhibition of Src family kinase activity.

L. McGuffin, J. Lovegrove, K. Watson, 2015, The Journal of nutritional biochemistry.

The FunFOLD 2 server for the prediction of protein ligand interactions

Daniel B. Roche, Maria T. Buenavista, L. McGuffin, 2013 .

Protein structure prediction servers at University College London

Liam J. McGuffin, Kevin Bryson, David T. Jones, 2005, Nucleic Acids Res..

Genetic diversity at the Dhn3 locus in Turkish Hordeum spontaneum populations with comparative structural analyses

Liam J McGuffin, Andres Aravena, L. McGuffin, 2016, Scientific Reports.

The PSIPRED protein structure prediction server

Liam J. McGuffin, Kevin Bryson, David T. Jones, 2000, Bioinform..

The ModFOLD4 server for the quality assessment of 3D protein models

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2013, Nucleic Acids Res..

Dominant β-catenin mutations cause intellectual disability with recognizable syndromic features.

Valter Tucci, Angelo Bifone, Alessandro Gozzi, 2014, The Journal of clinical investigation.

The DISOPRED server for the prediction of protein disorder

Bernard F. Buxton, Liam J. McGuffin, Kevin Bryson, 2004, Bioinform..

IntFOLD: an integrated web resource for high performance protein structure and function prediction

Liam J McGuffin, Ali H. A. Maghrabi, Ali H A Maghrabi, 2019, Nucleic Acids Res..

The FunFOLD2 server for the prediction of protein–ligand interactions

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2013, Nucleic Acids Res..

Improvement of the GenTHREADER Method for Genomic Fold Recognition

Liam J. McGuffin, David T. Jones, David T. Jones, 2003, Bioinform..

Predictive and Experimental Approaches for Elucidating Protein–Protein Interactions and Quaternary Structures

Liam James McGuffin, John Oliver Nealon, Limcy Seby Philomina, 2017, International journal of molecular sciences.

Improvement of protein tertiary and quaternary structure predictions using the ReFOLD refinement method and the AlphaFold2 recycling process

L. McGuffin, Recep Adiyaman, Nicholas S. Edmunds, 2022, bioRxiv.

Protein structure prediction and structural annotation of proteomes

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2018 .

A novel non-canonical mechanism of regulation of MST3 (mammalian Sterile20-related kinase 3)

Liam J. McGuffin, Angela Clerk, L. McGuffin, 2012, The Biochemical journal.

ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models

Liam J. McGuffin, Ali H. A. Maghrabi, L. McGuffin, 2017, Nucleic Acids Res..

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments

Liam J. McGuffin, Daniel B. Roche, L. McGuffin, 2010, Bioinform..

The ModFOLD server for the quality assessment of protein structural models

Liam J. McGuffin, L. McGuffin, 2008, Bioinform..

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Tapio Salakoski, Feng Zhang, Paolo Fontana, 2019, Genome Biology.

Disorder Prediction Methods, Their Applicability to Different Protein Targets and Their Usefulness for Guiding Experimental Studies

Liam J. McGuffin, Jennifer D. Atkins, L. McGuffin, 2015, International journal of molecular sciences.

Proteogenomics and in silico structural and functional annotation of the barley powdery mildew Blumeria graminis f. sp. hordei.

Liam J McGuffin, Rainer Cramer, Laurence V Bindschedler, 2011, Methods.

Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system

Liam J. McGuffin, David J. Studholme, Michael A. Brockhurst, 2015, Science.

Accurate template‐based modeling in CASP12 using the IntFOLD4‐TS, ModFOLD6, and ReFOLD methods

Daniel B. Roche, Liam J McGuffin, Ali H. A. Maghrabi, 2018, Proteins.

ReFOLD: a server for the refinement of 3D protein models guided by accurate quality estimates

Liam J. McGuffin, Robert Kempster, Ahmad N. Shuid, 2017, Nucleic Acids Res..

Characterisation of HvVIP1 and expression profile analysis of stress response regulators in barley under Agrobacterium and Fusarium infections

L. McGuffin, F. Gurel, F. Tufan, 2019, PloS one.

Structure and evolution of barley powdery mildew effector candidates

Liam J McGuffin, Rainer Cramer, Emiel Ver Loren van Themaat, 2012, BMC Genomics.

Model Quality Prediction

Liam J. McGuffin, L. McGuffin, 2010 .

Benchmarking consensus model quality assessment for protein fold recognition

Liam J. McGuffin, L. McGuffin, 2007, BMC Bioinformatics.

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2012, Bioinform..

IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences

Liam J. McGuffin, Daniel B. Roche, Jennifer D. Atkins, 2015, Nucleic Acids Res..

Proteins and Their Interacting Partners: An Introduction to Protein–Ligand Binding Site Prediction Methods

Daniel B. Roche, Daniel Barry Roche, Danielle Allison Brackenridge, 2015, International journal of molecular sciences.

The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

Liam J. McGuffin, Daniel B. Roche, Maria T. Buenavista, 2011, Nucleic Acids Res..

Assembling novel protein folds from super‐secondary structural fragments

Liam J McGuffin, David T Jones, David C. Jones, 2003, Proteins.

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Adam Liwo, Yi He, Jilong Li, 2018, Scientific Reports.

Improving sequence-based fold recognition by using 3D model quality assessment

Liam J. McGuffin, David T. Jones, David T. Jones, 2005, Bioinform..

The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms

Liam J. McGuffin, Stefano A. Street, Kevin Bryson, 2004, Nucleic Acids Res..

MAP4K4 expression in cardiomyocytes: multiple isoforms, multiple phosphorylations and interactions with striatins

L. McGuffin, A. Clerk, P. Sugden, 2021, The Biochemical journal.

What are the baselines for protein fold recognition?

Liam J. McGuffin, Kevin Bryson, David T. Jones, 2001, Bioinform..

Intrinsic disorder prediction from the analysis of multiple protein fold recognition models

Liam J. McGuffin, L. McGuffin, 2008, Bioinform..

PINOT: an intuitive resource for integrating protein-protein interactions

Liam J. McGuffin, John Hardy, Patrick A. Lewis, 2019, Cell Communication and Signaling.

Aligning sequences to structures.

Liam James McGuffin, L. McGuffin, 2008, Methods in molecular biology.

ModFOLD8: accurate global and local quality estimates for 3D protein models

L. McGuffin, Recep Adiyaman, Fahd M F Aldowsari, 2021, Nucleic Acids Res..

Estimating the Quality of 3D Protein Models Using the ModFOLD7 Server.

Liam J. McGuffin, Ali H. A. Maghrabi, L. McGuffin, 2020, Methods in molecular biology.

Are the integrin binding motifs within SARS CoV-2 spike protein and MHC class II alleles playing the key role in COVID-19?

L. McGuffin, M. Gerenčer, 2023, Frontiers in immunology.

Evolutionary rewiring of bacterial regulatory networks

L. McGuffin, M. Silby, M. Brockhurst, 2015, Microbial cell.

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

Liam J. McGuffin, Daniel B. Roche, Stuart J. Tetchner, 2011, BMC Bioinformatics.

Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers

Bajuna R. Salehe, L. McGuffin, Recep Adiyaman, 2023, Nucleic Acids Res..

Assessing the quality of modelled 3D protein structures using the ModFOLD server.

Daniel B. Roche, Maria T. Buenavista, Daniel Barry Roche, 2014, Methods in molecular biology.

The ModFOLD server for the quality assessment of protein structural models

L. McGuffin, 2008, Bioinform..

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins

Silvio C. E. Tosatto, M. Y. Lobanov, Md. Wasi Ul Kabir, 2023, Nucleic Acids Res..

Benchmarking of AlphaFold2 accuracy self-estimates as empirical quality measures and model ranking indicators and their comparison with independent model quality assessment programs

L. McGuffin, Ahmet G. Genc, Nicholas S Edmunds, 2023, bioRxiv.

Proteogenomics and in silico structural and functional annotation of the barley powdery mildew Blumeria graminis f. sp. hordei.

L. McGuffin, P. Spanu, Timothy A. Burgis, 2011, Methods.

Automated tertiary structure prediction with accurate local model quality assessment using the intfold‐ts method

Daniel B. Roche, Liam J McGuffin, Daniel B Roche, 2011, Proteins.

Methods for estimation of model accuracy in CASP12

Arne Elofsson, Keehyoung Joo, Karolis Uziela, 2017, bioRxiv.

SOcK, MiSTs, MASK and STicKs: the GCKIII (germinal centre kinase III) kinases and their heterologous protein-protein interactions.

L. McGuffin, A. Clerk, P. Sugden, 2013, The Biochemical journal.