Claire Lemaitre

发表

Pierre Peterlongo, Dominique Lavenier, Fabrice Legeai, 2016 .

Compareads: comparing huge metagenomic experiments

Dominique Lavenier, Rayan Chikhi, Pierre Peterlongo, 2012, BMC Bioinformatics.

A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships

Pascal Sirand-Pugnet, Florence Tardy, Christine Citti, 2011, BMC Bioinformatics.

New Software and Platforms - Next Generation Sequencing

Dominique Lavenier, Guillaume Rizk, Pierre Peterlongo, 2014 .

De Novo NGS Data Compression

Dominique Lavenier, Guillaume Rizk, Claire Lemaitre, 2017, Algorithms for Next-Generation Sequencing Data.

Compression of high throughput sequencing data with probabilistic de Bruijn graph.

Dominique Lavenier, Guillaume Rizk, Claire Lemaitre, 2014 .

Informatics and genomics

Laurent Gueguen, Adel Khelifi, Anne Morgat, 2005 .

Precise detection of rearrangement breakpoints in mammalian chromosomes

Marie-France Sagot, Claire Lemaitre, Christian Gautier, 2008, BMC Bioinformatics.

Towards a better understanding of the low recall of insertion variants with short-read based variant callers

Claire Lemaitre, Julien Thevenon, Wesley Delage, 2020, BMC Genomics.

SimkaMin: fast and resource frugal de novo comparative metagenomics

Stéphane Robin, Pierre Peterlongo, Claire Lemaitre, 2020, Bioinform..

New Results - NGS methodology

Guillaume Rizk, Pierre Peterlongo, Dominique Lavenier, 2014 .

Genotyping Structural Variations using Long Read Data

Dominique Lavenier, Lolita Lecompte, Claire Lemaitre, 2019 .

GATB: a software toolbox for genome assembly and analysis

Dominique Lavenier, Rayan Chikhi, Guillaume Rizk, 2014 .

Bloocoo, a memory efficient read corrector

Dominique Lavenier, Guillaume Rizk, Claire Lemaitre, 2014, ECCB 2014.

Speeding up NGS software development

Dominique Lavenier, Rayan Chikhi, Guillaume Rizk, 2014 .

Cassis: detection of genomic rearrangement breakpoints

Zanoni Dias, Marie-France Sagot, Christian Baudet, 2010, Bioinform..

GATB: Toolbox for developing efficient NGS software

Dominique Lavenier, Guillaume Rizk, Pierre Peterlongo, 2014 .

Mapping-Free and Assembly-Free Discovery of Inversion Breakpoints from Raw NGS Reads

Pierre Peterlongo, Liviu Ciortuz, Claire Lemaitre, 2014, AlCoB.

Réarrangements chromosomiques dans les génomes de mammifères : caractérisation des points de cassure. (Chromosomal rearrangements in mammalian genomes : characterising the breakpoints)

Claire Lemaitre, C. Lemaitre, 2008 .

GATB: Genome Assembly & Analysis Tool Box

Dominique Lavenier, Rayan Chikhi, Guillaume Rizk, 2014, Bioinform..

MindTheGap: integrated detection and assembly of short and long insertions

Rayan Chikhi, Guillaume Rizk, Claire Lemaitre, 2014, Bioinform..

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Vincent Miele, Pierre Peterlongo, Camille Marchet, 2016, GigaScience.

Multiple comparative metagenomics using multiset k-mer counting

Dominique Lavenier, Pierre Peterlongo, Sophie Schbath, 2016, PeerJ Comput. Sci..

SVJedi: Genotyping structural variations with long reads

Dominique Lavenier, Lolita Lecompte, Claire Lemaitre, 2019, bioRxiv.

Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph

Dominique Lavenier, Guillaume Rizk, Claire Lemaitre, 2015, BMC Bioinformatics.

A small trip in the untranquil world of genomes: A survey on the detection and analysis of genome rearrangement breakpoints

Marie-France Sagot, Claire Lemaitre, M. Sagot, 2008, Theor. Comput. Sci..

New Results - Bioinformatics Analysis

Dominique Lavenier, Claire Lemaitre, Gaëtan Benoit, 2017 .

DiscoSnp++: de novo detection of small variants from raw unassembled read set(s)

Pierre Peterlongo, Claire Lemaitre, Erwan Drezen, 2017, bioRxiv.

Footprints of Inversions at Present and Past Pseudoautosomal Boundaries in Human Sex Chromosomes

Marie-France Sagot, Gabriel A. B. Marais, Claire Lemaitre, 2009, Genome biology and evolution.

Reference-free detection of isolated SNPs

Rayan Chikhi, Guillaume Rizk, Pierre Peterlongo, 2014, Nucleic acids research.

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

Anthony Bretaudeau, Hadi Quesneville, Adriana Alberti, 2017, Scientific Reports.

Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny

Marie-France Sagot, Claire Lemaitre, Vincent Lacroix, 2011, BMC Genomics.

Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software

Dominique Lavenier, Alexander Sczyrba, Mihai Pop, 2017, bioRxiv.

Whole genome re-sequencing : lessons from unmapped reads

Guillaume Rizk, Claire Lemaitre, Fabrice Legeai, 2013 .

Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation

Marie-France Sagot, Alain Arneodo, Claire Lemaitre, 2009 .