S. Sze

发表

NEW LEADING/TRAILING EDGE MODULATION STRATEGIES FOR TWO-STAGE PFC AC/DC ADAPTERS TO REDUCE DC-LINK CAPACITOR

P. Enjeti, C. Georghiades, Jingdi Sun, 2007 .

Finding Weak Motifs in DNA Sequences

Mikhail S. Gelfand, Pavel A. Pevzner, Sing-Hoi Sze, 2001, Pacific Symposium on Biocomputing.

Large-scale analysis of gene clustering in bacteria.

S. Sze, Q. Yang, 2008, Genome research.

Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis

Geoffrey H. Siwo, Vineet K. Sharma, R. Wilson, 2014, Science.

Functional genomics of the stable fly, Stomoxys calcitrans, reveals mechanisms underlying reproduction, host interactions, and novel targets for pest control

Timothy B Sackton, Robert M. Waterhouse, R. Wilson, 2019, bioRxiv.

Randomized Divide-and-Conquer: Improved Path, Matching, and Packing Algorithms

Fenghui Zhang, Stefan Richter, Joachim Kneis, 2009 .

Greedy Localization and Color-Coding: Improved Matching and Packing Algorithms

Jianer Chen, Sing-Hoi Sze, Songjian Lu, 2006, IWPEC.

Machine learning performance in a microbial molecular autopsy context: A cross-sectional postmortem human population study

S. Sze, A. M. Tarone, M. Benbow, 2019, PloS one.

Promoter scanning during transcription initiation in Saccharomyces cerevisiae: Pol II in the “shooting gallery”

Charles D. Johnson, Jordi Abante Llenas, Craig D. Kaplan, 2019, bioRxiv.

Accurate prediction of maize grain yield using its contributing genes for gene-based breeding.

Shizhong Xu, S. Sze, S. Murray, 2019, Genomics.

Analysis of the genes controlling cotton fiber length reveals the molecular basis of plant breeding and the genetic potential of current cultivars for continued improvement.

C. W. Smith, S. Sze, Meiping Zhang, 2022, Plant science : an international journal of experimental plant biology.

Genomic organization, annotation, and ligand-receptor inferences of chicken chemokines and chemokine receptor genes based on comparative genomics

S. Sze, D. Adelson, James J. Zhu, 2005, BMC Genomics.

S. Sze, A. M. Tarone, P. L. Chang, 2019, BMC genomics.

Gene expression correlates of facultative predation in the blow fly Chrysomya rufifacies (Diptera: Calliphoridae)

S. Sze, A. M. Tarone, J. Tomberlin, 2019, Ecology and evolution.

Computational Approaches for Studying Alternative Splicing in Nonmodel Organisms from RNA‐SEQ Data

S. Sze, 2016 .

Hermetia illucens L. larvae–associated intestinal microbes reduce the transmission risk of zoonotic pathogens in pig manure

S. Sze, J. Tomberlin, L. Zheng, 2022, Microbial biotechnology.

Genome Sequence of a Providencia stuartii Strain Isolated from Lucilia sericata Salivary Glands

David K. Visi, S. Sze, A. M. Tarone, 2017, Genome Announcements.

Genome Sequence of a Proteus mirabilis Strain Isolated from the Salivary Glands of Larval Lucilia sericata

David K. Visi, S. Sze, A. M. Tarone, 2016, Genome Announcements.

Genome-wide identification of genes enabling accurate prediction of hybrid performance from parents across environments and populations for gene-based breeding in maize.

S. Sze, S. Murray, C. Scheuring, 2022, Plant science : an international journal of experimental plant biology.

Arabidopsis Argonaute10 Specifically Sequesters miR166/165 to Regulate Shoot Apical Meristem Development

Hongliang Zhu, Sing-Hoi Sze, Ronghui Wang, 2011, Cell.

Identiﬁcation and Characterization of Small RNA Markers of Age in the Blow Fly Cochliomyia macellaria (Fabricius) (Diptera: Calliphoridae) Immature blow ﬂy is critical temporal estimations

Jonathan J. Parrott, S. Sze, A. M. Tarone, 2022 .

High-Resolution Phenotypic Landscape of the RNA Polymerase II Trigger Loop

S. Sze, C. Kaplan, Huiyan Jin, 2016, bioRxiv.

Correction: High-Resolution Phenotypic Landscape of the RNA Polymerase II Trigger Loop

S. Sze, C. Kaplan, Huiyan Jin, 2018, PLoS genetics.

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

Charles D. Johnson, Jordi Abante Llenas, William K. M. Lai, 2020, Genome Biology.

High-Resolution Phenotypic Landscape of the RNA Polymerase II Trigger Loop

Craig D. Kaplan, S. Sze, C. Kaplan, 2016, bioRxiv.

The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

Timothy B Sackton, Robert M. Waterhouse, R. Wilson, 2021, BMC biology.

Corepressor-Dependent Silencing of Chromosomal Regions Encoding Neuronal Genes

Sing-Hoi Sze, Pavel A Pevzner, Gail Mandel, 2002, Science.

Sexual Dimorphism in Growth Rate and Gene Expression Throughout Immature Development in Wild Type Chrysomya rufifacies (Diptera: Calliphoridae) Macquart

S. Sze, C. E. Hjelmen, J. Tomberlin, 2021, Frontiers in Ecology and Evolution.

Splicing graphs and EST assembly problem

Haixu Tang, Pavel A. Pevzner, Sing-Hoi Sze, 2002, ISMB.

Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment

Pavel A. Pevzner, Sing-Hoi Sze, P. Pevzner, 1997, RECOMB '97.

A 24-48 h fed Amblyomma americanum tick saliva immuno-proteome

S. Sze, A. Mulenga, Ž. Radulović, 2014, BMC Genomics.

Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton.

S. Sze, C. Town, B. Triplett, 2006, The Plant journal : for cell and molecular biology.

Developmental and gene expression analyses of a cotton naked seed mutant

S. Sze, Z. Chen, R. Kohel, 2006, Planta.

Combinatorial Approaches to Finding Subtle Signals in DNA Sequences

Pavel A. Pevzner, Sing-Hoi Sze, P. Pevzner, 2000, ISMB.

A de novo transcriptome assembly of Lucilia sericata (Diptera: Calliphoridae) with predicted alternative splices, single nucleotide polymorphisms and transcript expression estimates

S. Sze, P. L. Chang, S. Nuzhdin, 2012, Insect molecular biology.

Widespread epistasis shapes RNA Polymerase II active site function and evolution

S. Sze, C. Kaplan, C. Qiu, 2023, bioRxiv.

Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues

Sing-Hoi Sze, S. Sze, Yue Lu, 2008, Nucleic acids research.

Global Reprogramming of Host Kinase Signaling in Response to Fungal Infection.

S. Sze, J. Samuel, R. Alaniz, 2017, Cell host & microbe.

Algorithms and software for support of gene identification experiments

Mikhail S. Gelfand, Pavel A. Pevzner, Sing-Hoi Sze, 1998, Bioinform..

Molecular and genetic dissection of the USDA rice mini-core collection using high-density SNP markers.

S. Sze, M. Arif, Meiping Zhang, 2021, Plant science : an international journal of experimental plant biology.

Brucella activates the host RIDD pathway to subvert BLOS1-directed immune defense

Charles D. Johnson, S. Sze, K. Patrick, 2022, eLife.

Identifying Gene Clusters within Localized Regions in Multiple Genomes

Fenghui Zhang, Michael R. Thon, Sing-Hoi Sze, 2010, J. Comput. Biol..

Saccharomyces 1 cerevisiae reveals control by DNA sequence , RNA Polymerase II activity , and NTP 2 levels 3 4

S. Sze, Yunye Zhu, I. Vvedenskaya, 2023 .

Quantitative analysis of transcription start site selection in Saccharomyces cerevisiae reveals control by DNA sequence, RNA Polymerase II activity, and NTP levels

Craig D. Kaplan, S. Sze, Yunye Zhu, 2021, bioRxiv.

Identifying clusters of functionally related genes in genomes

Michael R. Thon, Sing-Hoi Sze, Gangman Yi, 2007, Bioinform..

A Polynomial Time Solvable Formulation of Multiple Sequence Alignment

Yue Lu, Sing-Hoi Sze, Qingwu Yang, 2005, RECOMB.

Functional characterization of calliphorid cell death genes and cellularization gene promoters for controlling gene expression and cell viability in early embryos

S. Sze, M. J. Scott, F. Li, 2015, Insect molecular biology.

Differential Expression Analysis of Dynamical Sequencing Count Data with a Gamma Markov Chain

Xiaoning Qian, Sing-Hoi Sze, Ehsan Hajiramezanali, 2018, 1803.02527.

Bayesian gamma-negative binomial modeling of single-cell RNA sequencing data

Xiaoning Qian, Mingyuan Zhou, Sing-Hoi Sze, 2019, BMC Genomics.

Guide RNA biogenesis involves a novel RNase III family endoribonuclease in Trypanosoma brucei.

S. Sze, J. Sacchettini, X. Ji, 2011, RNA.

Identification of the syr-syp Box in the Promoter Regions of Genes Dedicated to Syringomycin and Syringopeptin Production by Pseudomonas syringae pv. syringae B301D

S. Sze, Shi-En Lu, Nian Wang, 2006, Journal of bacteriology.

Supervised Protein Family Classification and New Family Construction

Michael R. Thon, Sing-Hoi Sze, Gangman Yi, 2012, J. Comput. Biol..

Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences

Yue Lu, Sing-Hoi Sze, S. Sze, 2007, RECOMB.

De novo transcriptome sequencing and analysis revealed the molecular basis of rapid fat accumulation by black soldier fly (Hermetia illucens, L.) for development of insectival biodiesel

K. Rehman, S. Sze, J. Tomberlin, 2019, Biotechnology for Biofuels.

Phenotypic and molecular dissection of grain quality using the USDA rice mini-core collection.

S. Sze, M. Arif, Meiping Zhang, 2019, Food chemistry.

Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements

Sing-Hoi Sze, Qingwu Yang, S. Sze, 2008, BMC Bioinformatics.

FEELING OUT THE ELEPHANT IN THE ROOM :W HY DO TEMPORAL LOBE SEIZURES CAUSE UNCONSCIOUSNESS?

R. Burgess, C. Glass, S. Sze, 2009 .

Accurate Prediction of a Quantitative Trait Using the Genes Controlling the Trait for Gene-Based Breeding in Cotton

Shizhong Xu, S. Sze, Meiping Zhang, 2020, Frontiers in Plant Science.

Accurate prediction of complex traits for individuals and offspring from parents using a simple, rapid, and efficient method for gene-based breeding in cotton and maize.

S. Sze, S. Murray, Wenwei Xu, 2021, Plant science : an international journal of experimental plant biology.

Widespread epistasis shapes RNA Polymerase II active site function and evolution

Craig D. Kaplan, S. Sze, C. Kaplan, 2023, bioRxiv.

Finding Alignments of Conserved Graphlets in Protein Interaction Networks

Sing-Hoi Sze, Mu-Fen Hsieh, S. Sze, 2014, J. Comput. Biol..

Graphlet alignment in protein interaction networks

Sing-Hoi Sze, Mu-Fen Hsieh, S. Sze, 2010, 2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Motif Finding in DNA Sequences Based on Skipping Nonconserved Positions in Background Markov Chains

Xiaoyan Zhao, Sing-Hoi Sze, S. Sze, 2011, J. Comput. Biol..

Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences

Xiaoyan Zhao, Sing-Hoi Sze, S. Sze, 2005, Systems Biology and Regulatory Genomics.

Phytohormone Regulation of Cotton Fiber Development In Vitro

S. Sze, Z. Chen, Hee-Jin Kim, 2007 .

S. Sze, P. L. Chang, M. Friesen, 2017, BMC Genomics.

A scalable and memory-efficient algorithm for de novo transcriptome assembly of non-model organisms

S. Sze, Corbin D. Jones, J. Tomberlin, 2017, BMC Genomics.

Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

Sing-Hoi Sze, Aaron M. Tarone, Shuhua Fu, 2014, BMC Genomics.

Gene hunting without sequencing genomic clones: finding exon boundaries in cDNAs.

P A Pevzner, P. Pevzner, S. Sze, 1998, Genomics.

A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data

S. Sze, A. Tarone, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Parameterized and approximation algorithms for maximum agreement forest in multifurcating trees

Jianer Chen, Sing-Hoi Sze, Jia-Hao Fan, 2015, Theor. Comput. Sci..

Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels

Craig D. Kaplan, S. Sze, Yunye Zhu, 2024, Nature structural & molecular biology.

Path Matching and Graph Matching in Biological Networks

Sing-Hoi Sze, Qingwu Yang, S. Sze, 2007, J. Comput. Biol..

Guide RNA biogenesis involves a novel RNase III family endoribonuclease in Trypanosoma brucei.

S. Sze, J. Sacchettini, X. Ji, 2011, RNA.