M. S. Johnson

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Alignment and searching for common protein folds using a data bank of structural templates.

John P. Overington, T. Blundell, M. S. Johnson, 1993, Journal of molecular biology.

Residue–Residue contact substitution probabilities derived from aligned three‐dimensional structures and the identification of common folds

M. S. Johnson, M. A. Rodionov, 1994, Protein science : a publication of the Protein Society.

Environment‐specific amino acid substitution tables: Tertiary templates and prediction of protein folds

John P. Overington, T. Blundell, A. Sali, 1992, Protein science : a publication of the Protein Society.

Origins and Evolutionary Relationships of Retroviruses

M. A. McClure, R. Doolittle, M. S. Johnson, 1989, The Quarterly Review of Biology.

A structural basis for sequence comparisons. An evaluation of scoring methodologies.

John P. Overington, M. S. Johnson, M. S. Johnson, 1993, Journal of molecular biology.

A fragment library based on Gaussian mixtures predicting favorable molecular interactions.

M Gyllenberg, T Koski, T. Koski, 2001, Journal of molecular biology.

Phylogenetic relationships from three-dimensional protein structures.

T L Blundell, A Sali, T. Blundell, 1990, Methods in enzymology.

Confidence limits on the branching order of phylogenetic trees

M. S. Johnson, Mark S. Johnson, A. Shearer, 1993, Protein science : a publication of the Protein Society.

Cornering and catching the common protein fold.

M. S. Johnson, M. S. Johnson, 1995, Molecular medicine today.

Studies on NADH(NADPH)-cytochrome c reductase (FMN-containing) from yeast: steady-state kinetic properties of the flavoenzyme from top-fermenting ale yeast.

M. S. Johnson, S. Kuby, 1986, Archives of biochemistry and biophysics.

Differential recognition of Toxoplasma gondii recombinant nucleoside triphosphate hydrolase isoforms by naturally infected human sera.

M. S. Johnson, A. Johnson, K. Broady, 1999, International journal for parasitology.

Sequence comparisons of retroviral proteins: relative rates of change and general phylogeny.

M. A. McClure, R. Doolittle, M. S. Johnson, 1988, Proceedings of the National Academy of Sciences of the United States of America.

Retrovirus phylogeny and evolution.

M. A. McClure, R. Doolittle, M. S. Johnson, 1990, Current topics in microbiology and immunology.

Domainal evolution of a prokaryotic DNA repair protein and its relationship to active-transport proteins

R. Doolittle, M. S. Johnson, A. Sancar, 1986, Nature.

Computer analysis of retroviral pol genes: assignment of enzymatic functions to specific sequences and homologies with nonviral enzymes.

M. A. McClure, R. Doolittle, M. S. Johnson, 1986, Proceedings of the National Academy of Sciences of the United States of America.

Fragment ranking in modelling of protein structure. Conformationally constrained environmental amino acid substitution tables.

John P. Overington, T L Blundell, C M Topham, 1993, Journal of molecular biology.

Aligning amino acid sequences: Comparison of commonly used methods

R. Doolittle, M. S. Johnson, D. Feng, 1985, Journal of Molecular Evolution.

Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction

John P. Overington, T L Blundell, A Sali, 1990, Proceedings of the Royal Society of London. Series B: Biological Sciences.

Protein structure comparisons using a combination of a genetic algorithm, dynamic programming and least-squares minimization.

A C May, M S Johnson, A. C. May, 1994, Protein engineering.

Knowledge-based protein modeling.

T. Blundell, M. S. Johnson, R. Sowdhamini, 1994, Critical reviews in biochemistry and molecular biology.

Contrasted modes of evolution in the same genome: allozymes and adaptive change in Heliconius.

M. S. Johnson, W. Eanes, J. Turner, 1979, Proceedings of the National Academy of Sciences of the United States of America.

Repetitive segmental structure of the transducin beta subunit: homology with the CDC4 gene and identification of related mRNAs.

R. Doolittle, M. Simon, M. S. Johnson, 1986, Proceedings of the National Academy of Sciences of the United States of America.

The core domain of retrotransposon integrase in Hordeum: predicted structure and evolution.

M. S. Johnson, A. Schulman, O. Pentikäinen, 1998, Molecular biology and evolution.

Discrimination of common protein folds: application of protein structure to sequence/structure comparisons.

John P. Overington, A C May, J P Overington, 1996, Methods in enzymology.

Fractionation on benzoylated DEAE-cellulose of tRNA from tobacco mosaic virus-infected tobacco leaves.

M. S. Johnson, R. Young, M. S. Johnson, 1969, Virology.

The three-dimensional structure at 2.4 A resolution of glycosylated proteinase A from the lysosome-like vacuole of Saccharomyces cerevisiae.

T. Blundell, M. S. Johnson, J. Cooper, 1997, Journal of molecular biology.

Relocation of a protease-like gene segment between two retroviruses.

M. A. McClure, R. Doolittle, M. S. Johnson, 1987, Proceedings of the National Academy of Sciences of the United States of America.

Improved genetic algorithm-based protein structure comparisons: pairwise and multiple superpositions.

A C May, M S Johnson, A. C. May, 1995, Protein engineering.

Modelling of the lignin peroxidase LIII of Phlebia radiata: use of a sequence template generated from a 3-D structure.

John P. Overington, T L Blundell, J P Overington, 1993, Protein engineering.

Glycyl-tRNA synthetase of Escherichia coli: immunological homology with phenylalanyl-tRNA synthetase.

M. S. Johnson, B. Weber, E. Petrella, 1988, Archives of Biochemistry and Biophysics.

Structural model of the catalytic domain of an enzyme with cell adhesion activity: human vascular adhesion protein-1 (HVAP-1) D4 domain is an amine oxidase.

M. S. Johnson, S. Jalkanen, T. Salminen, 1998, Protein engineering.

The recognition of protein structure and function from sequence: adding value to genome data.

T L Blundell, N Srinivasan, A C May, 1994, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.