Randall H. Brown

Begin at the beginning: predicting genes with 5' UTRs.

Samuel S. Gross, M. Brent, Randall H. Brown, 2005, Genome research.

Gene prediction and verification in a compact genome with numerous small introns.

Charles J. Vaske, M. Brent, Aaron E. Tenney, 2004, Genome research.

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline

M. Brent, M. Arumugam, Randall H. Brown, 2006, Genome Biology.

Evolution of genes and genomes on the Drosophila phylogeny

Melanie A. Huntley, Sonja J. Prohaska, Albert J. Vilella, 2007, Nature.

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

Raymond K. Auerbach, William Stafford Noble, Stephen C. J. Parker, 2011, PLoS biology.

Model-based transcriptome engineering promotes a fermentative transcriptional state in yeast

Michael R. Brent, Ezekiel J. Maier, Drew G. Michael, 2016, Proceedings of the National Academy of Sciences.

Optimization of Gene Prediction via More Accurate Phylogenetic Substitution Models

Michael R. Brent, Ezekiel J. Maier, Randall H. Brown, 2011 .

Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment

Uwe Ohler, Jennifer Harrow, Sin Lam Tan, 2006, Genome Biology.

Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner

Manimozhiyan Arumugam, Michael R. Brent, David V. Lu, 2009, Bioinform..

Model-based transcriptome engineering promotes a fermentative transcriptional state in yeast.

Ezekiel J. Maier, Michael R Brent, M. Brent, 2017, Proceedings of the National Academy of Sciences of the United States of America.