A. Feist

发表

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

Ronan M. T. Fleming, Adam M. Feist, Daniel C. Zielinski, 2007, Nature Protocols.

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

Adam M. Feist, B. Palsson, A. Feist, 2008, Nature Biotechnology.

Modeling methanogenesis with a genome‐scale metabolic reconstruction of Methanosarcina barkeri

Adam M. Feist, T. Ideker, B. Palsson, 2006 .

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

Adam M. Feist, B. Palsson, P. Karp, 2007, Molecular systems biology.

Use of Adaptive Laboratory Evolution To Discover Key Mutations Enabling Rapid Growth of Escherichia coli K-12 MG1655 on Glucose Minimal Medium

Edward J. O'Brien, Adam M. Feist, Ryan A. LaCroix, 2014, Applied and Environmental Microbiology.

Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations

Adam M. Feist, Markus J. Herrgård, Ryan A. LaCroix, 2014, Molecular biology and evolution.

The biomass objective function.

Adam M. Feist, B. Palsson, A. Feist, 2010, Current opinion in microbiology.

A comprehensive genome-scale reconstruction of Escherichia coli metabolism—2011

Adam M. Feist, Tom M. Conrad, Jeffrey D. Orth, 2011, Molecular systems biology.

Reconstruction of biochemical networks in microorganisms

Adam M. Feist, Markus J. Herrgård, B. Palsson, 2009, Nature Reviews Microbiology.

Maximizing biomass productivity and cell density of Chlorella vulgaris by using light-emitting diode-based photobioreactor.

Adam M. Feist, Adam M Feist, Bernhard Ø Palsson, 2012, Journal of biotechnology.

Evolution of gene knockout strains of E. coli reveal regulatory architectures governed by metabolism

Adam M. Feist, Troy E. Sandberg, B. Palsson, 2018, Nature Communications.

Decomposition of transcriptional responses provides insights into differential antibiotic susceptibility

Adam M. Feist, Anand V. Sastry, B. Palsson, 2020, bioRxiv.

Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers

B. Palsson, A. Feist, C. Lloyd, 2020, Proceedings of the National Academy of Sciences.

Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers

Adam M. Feist, B. Palsson, A. Feist, 2019, Proceedings of the National Academy of Sciences.

Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes.

Adam M. Feist, Jonathan M. Monk, Markus J. Herrgård, 2016, Cell systems.

iML1515, a knowledgebase that computes Escherichia coli traits

Adam M. Feist, Zachary A. King, Jonathan M. Monk, 2017, Nature Biotechnology.

Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring.

Adam M. Feist, Christopher P. Long, Christopher P Long, 2017, Metabolic engineering.

Modeling Method for Increased Precision and Scope of Directly Measurable Fluxes at a Genome-Scale.

Adam M. Feist, Jamey D. Young, B. Palsson, 2016, Analytical chemistry.

A model‐driven quantitative metabolomics analysis of aerobic and anaerobic metabolism in E. coli K‐12 MG1655 that is biochemically and thermodynamically consistent

Adam M. Feist, Zachary A. King, B. Palsson, 2014, Biotechnology and bioengineering.

Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli

Adam M. Feist, B. Palsson, A. Feist, 2013, Molecular systems biology.

Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media

Adam M. Feist, Jonathan M. Monk, Connor A. Olson, 2021, GigaScience.

Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media

Adam M. Feist, Jonathan M. Monk, Connor A. Olson, 2020, bioRxiv.

Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow.

Edward J. O'Brien, Adam M. Feist, Jonathan M. Monk, 2016, Cell systems.

Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path.

Adam M. Feist, B. Palsson, A. Feist, 2014, Metabolic engineering.

Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli.

Adam M. Feist, Daniel C. Zielinski, Markus J. Herrgård, 2010, Metabolic engineering.

Genomically and biochemically accurate metabolic reconstruction of Methanosarcina barkeri Fusaro, iMG746.

Adam M. Feist, Matthew N. Benedict, N. Price, 2013, Biotechnology journal.

Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution.

Ke Chen, Edward J. O'Brien, Adam M. Feist, 2016, Cell systems.

Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution.

Adam M. Feist, Adam M Feist, Markus J. Herrgård, 2017, Metabolic engineering.

Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association

Adam M. Feist, Karsten Zengler, Harish Nagarajan, 2013, Nature Communications.

Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli

Adam M. Feist, Bernhard O Palsson, Adam M Feist, 2017, Proceedings of the National Academy of Sciences.

Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System.

Elizabeth Brunk, Richard Szubin, Bernhard O Palsson, 2018, Metabolic engineering.

Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes.

Elizabeth Brunk, Richard Szubin, Adam M. Feist, 2018, Metabolic engineering.

Cellular responses to reactive oxygen species are predicted from molecular mechanisms

Adam M. Feist, Jared T. Broddrick, Jonathan M. Monk, 2019, Proceedings of the National Academy of Sciences.

MID Max: LC-MS/MS Method for Measuring the Precursor and Product Mass Isotopomer Distributions of Metabolic Intermediates and Cofactors for Metabolic Flux Analysis Applications.

Adam M. Feist, Bernhard O. Palsson, Douglas McCloskey, 2016, Analytical chemistry.

Cofactory: Sequence‐based prediction of cofactor specificity of Rossmann folds

Adam M. Feist, Nikolaj Blom, Søren Brunak, 2014, Proteins.

Model-driven discovery of underground metabolic functions in Escherichia coli

Elizabeth Brunk, Adam M. Feist, Bernhard O Palsson, 2015, Proceedings of the National Academy of Sciences.

Do genome-scale models need exact solvers or clearer standards?

Ronan M. T. Fleming, Adam M. Feist, Jason A. Papin, 2015, Molecular systems biology.

High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities

Adam M. Feist, Bernhard O Palsson, Juan Nogales, 2019, Environmental microbiology.

BOFdat: generating biomass objective function stoichiometric coefficients from experimental data

Adam M. Feist, Bernhard O. Palsson, Jean-Christophe Lachance, 2018, bioRxiv.

Metabolic impact of an NADH-producing glucose-6-phosphate dehydrogenase in Escherichia coli.

Adam M. Feist, Daniel C. Zielinski, A. Feist, 2014, Microbiology.

Multiple Optimal Phenotypes Overcome Redox and Glycolytic Intermediate Metabolite Imbalances in Escherichia coli pgi Knockout Evolutions

Adam M. Feist, Troy E. Sandberg, B. Palsson, 2018, Applied and Environmental Microbiology.

Experimental evolution reveals the genetic basis and systems biology of superoxide stress tolerance

Adam M. Feist, Anand V. Sastry, Connor A. Olson, 2019, bioRxiv.

Genetic Determinants Enabling Medium-Dependent Adaptation to Nafcillin in Methicillin-Resistant Staphylococcus aureus

Adam M. Feist, B. Palsson, V. Nizet, 2020, mSystems.

Global Rebalancing of Cel lular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution Graphical

Edward J. O'Brien, Adam M. Feist, B. Palsson, 2016 .

A pH and solvent optimized reverse-phase ion-paring-LC–MS/MS method that leverages multiple scan-types for targeted absolute quantification of intracellular metabolites

Adam M. Feist, B. Palsson, A. Feist, 2015, Metabolomics.

Adaptive laboratory evolution of Pseudomonas putida KT2440 improves p-coumaric and ferulic acid catabolism and tolerance

Adam M. Feist, Markus J. Herrgård, B. Simmons, 2020, Metabolic engineering communications.

Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion

Edward J. O'Brien, Zachary A. King, B. Palsson, 2016, bioRxiv.

Adaptive laboratory evolution of tolerance to dicarboxylic acids in Saccharomyces cerevisiae.

Adam M. Feist, Markus J. Herrgård, A. Feist, 2019, Metabolic engineering.

Generation of ionic liquid tolerant Pseudomonas putida KT2440 strains via adaptive laboratory evolution

Adam M. Feist, Connor A. Olson, B. Palsson, 2020, Green Chemistry.

Adaptive laboratory evolution of Rhodosporidium toruloides to inhibitors derived from lignocellulosic biomass and genetic variations behind evolution.

Adam M. Feist, A. Feist, S. Mussatto, 2021, Bioresource technology.

Adaptive laboratory evolution reveals general and specific chemical tolerance mechanisms and enhances biochemical production

Markus J. Herrgård, Ida Bonde, B. Palsson, 2019, bioRxiv.

Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity

Adam M. Feist, Zachary A. King, James T. Yurkovich, 2020, BMC Genomics.

Adaptive laboratory evolution of Escherichia coli under acid stress

Adam M. Feist, Anand V. Sastry, Connor A. Olson, 2019, bioRxiv.

Generation of an E. coli platform strain for improved sucrose utilization using adaptive laboratory evolution

Adam M. Feist, Markus J. Herrgård, A. Feist, 2019, Microbial Cell Factories.

Elucidating aromatic acid tolerance at low pH in Saccharomyces cerevisiae using adaptive laboratory evolution

Adam M. Feist, Markus J. Herrgård, A. Feist, 2020, Proceedings of the National Academy of Sciences.

Profiling the effect of nafcillin on HA-MRSA D592 using bacteriological and physiological media

Adam M. Feist, Jonathan M. Monk, Connor A. Olson, 2020, bioRxiv.

The genetic basis for adaptation of model-designed syntrophic co-cultures

Edward J. O'Brien, Adam M. Feist, Rob Knight, 2019, PLoS Comput. Biol..

Pseudogene repair driven by selection pressure applied in experimental evolution

Adam M. Feist, Anand V. Sastry, Connor A. Olson, 2019, Nature Microbiology.

Revealing Pentose Catabolism in Pseudomonas putida

Adam M. Feist, B. Simmons, A. Feist, 2022, bioRxiv.

Membrane transporter identification and modulation via adaptive laboratory evolution.

Adam M. Feist, Markus J. Herrgård, Anand V. Sastry, 2022, Metabolic engineering.

Understanding Functional Redundancy and Promiscuity of Multidrug Transporters in E. coli under Lipophilic Cation Stress

Adam M. Feist, D. Kell, A. Feist, 2022, Membranes.

Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network

Sang Yup Lee, Adam M. Feist, Bernhard Ø. Palsson, 2008, Applied Microbiology and Biotechnology.

Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes

Adam M. Feist, Jonathan M. Monk, Christopher P. Long, 2022, mSystems.

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

Ronan M. T. Fleming, Aarash Bordbar, Adam M. Feist, 2007, Nature Protocols.

Genome-Scale Reconstruction, Modeling, and Simulation of E. coli℉s Metabolic Network

Adam M. Feist, Bernhard O. Palsson, Ines Thiele, 2009 .

Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media

Adam M. Feist, Jonathan M. Monk, Connor A. Olson, 2019, Scientific Data.

Tracing compartmentalized NADPH metabolism in the cytosol and mitochondria of mammalian cells.

Adam M. Feist, Christian M. Metallo, A. Feist, 2014, Molecular cell.

Machine-learning from Pseudomonas putida Transcriptomes Reveals Its Transcriptional Regulatory Network

Adam M. Feist, Anand V. Sastry, A. Feist, 2022, bioRxiv.

Optimal cofactor swapping can increase the theoretical yield for chemical production in Escherichia coli and Saccharomyces cerevisiae.

Adam M. Feist, Zachary A. King, A. Feist, 2014, Metabolic engineering.

Model-driven design and evolution of non-trivial synthetic syntrophic pairs

Edward J. O'Brien, Adam M. Feist, Zachary A. King, 2018, bioRxiv.

Compensatory evolution of Pseudomonas aeruginosa’s slow growth phenotype suggests mechanisms of adaptation in cystic fibrosis

Adam M. Feist, A. Feist, S. Molin, 2021, Nature Communications.

Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity

Adam M. Feist, Zachary A. King, James T. Yurkovich, 2020, BMC Genomics.

The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology.

Adam M. Feist, Bernhard O Palsson, Adam M Feist, 2019, Metabolic engineering.

Evolution of E. coli on [U-13C]Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology

Adam M. Feist, Bernhard O. Palsson, Christopher P. Long, 2016, PloS one.

Antigen receptor repertoire profiling from RNA-seq data

Elizabeth Brunk, Anand Sastry, Adam M. Feist, 2022 .

MEMOTE for standardized genome-scale metabolic model testing

Steffen Klamt, Anne Richelle, Hyun Uk Kim, 2020, Nature Biotechnology.

Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus

Adam M. Feist, Connor A. Olson, V. Nizet, 2021, Communications Biology.

Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus

Adam M. Feist, Connor A. Olson, B. Palsson, 2020, bioRxiv.

OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States

Richard Szubin, Adam M. Feist, Bernhard O Palsson, 2019, Molecular biology and evolution.

Strain-Specific Metabolic Requirements Revealed by a Defined Minimal Medium for Systems Analyses of Staphylococcus aureus

Adam M. Feist, Jonathan M. Monk, Liam L Weng, 2019, Applied and Environmental Microbiology.

ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation

Adam M. Feist, Bernhard O. Palsson, Patrick V. Phaneuf, 2018, bioRxiv.

Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution

Adam M. Feist, Adam M Feist, Markus J. Herrgård, 2017, Microbial Cell Factories.

Enzyme promiscuity shapes adaptation to novel growth substrates

Adam M. Feist, Bernhard O Palsson, Zachary A. King, 2019, Molecular systems biology.

Enzyme promiscuity shapes evolutionary innovation and optimization

Adam M. Feist, Zachary A. King, Richard A. Notebaart, 2018, bioRxiv.

Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media

Adam M. Feist, Jonathan M. Monk, Connor A. Olson, 2019, Scientific Data.

Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity

Adam M. Feist, Connor A. Olson, A. Feist, 2022, Nature Communications.

Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data

Adam M. Feist, Daniel C. Zielinski, James T. Yurkovich, 2021, ACS synthetic biology.

Reframing gene essentiality in terms of adaptive flexibility

Adam M. Feist, Bernhard O. Palsson, L. B. Crepaldi, 2018, BMC Systems Biology.

A Model for Designing Adaptive Laboratory Evolution Experiments

Adam M. Feist, Bernhard O. Palsson, Ryan A. LaCroix, 2017, Applied and Environmental Microbiology.

Laboratory evolution of multiple E. coli strains reveals unifying principles of adaptation but diversity in driving genotypes

Adam M. Feist, Jonathan M. Monk, Erol S. Kavvas, 2020, bioRxiv.

Enhanced Metabolite Productivity of Escherichia coli Adapted to Glucose M9 Minimal Medium

Adam M. Feist, Morten Otto Alexander Sommer, A. Feist, 2018, Front. Bioeng. Biotechnol..

Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals.

Adam M. Feist, Markus J. Herrgård, Ida Bonde, 2023, Metabolic engineering.

Engineering Pseudomonas putida for improved utilization of syringyl aromatics

Adam M. Feist, A. Feist, W. Niu, 2022, Biotechnology and bioengineering.

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments

Joshua A. Lerman, Adam M. Feist, Bernhard Ø. Palsson, 2013, Proceedings of the National Academy of Sciences.

Multi-omic data integration enables discovery of hidden biological regularities

Ali Ebrahim, Elizabeth Brunk, Justin Tan, 2016, Nature Communications.

Optimizing Cofactor Specificity of Oxidoreductase Enzymes for the Generation of Microbial Production Strains—OptSwap

Adam M. Feist, Zachary A. King, A. Feist, 2013 .

Cumulative Number of Cell Divisions as a Meaningful Timescale for Adaptive Laboratory Evolution of Escherichia coli

Adam M. Feist, Bernhard Ø. Palsson, Dae-Hee Lee, 2011, PloS one.

Acidithiobacillus ferrooxidans's comprehensive model driven analysis of the electron transfer metabolism and synthetic strain design for biomining applications

Adam M. Feist, Juan A. Asenjo, Barbara A. Andrews, 2016, Metabolic engineering communications.

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale

Edward J. O'Brien, Joshua A. Lerman, Adam M. Feist, 2014, BMC Systems Biology.

Laboratory Evolution to Alternating Substrate Environments Yields Distinct Phenotypic and Genetic Adaptive Strategies

Adam M. Feist, Bernhard O. Palsson, Colton J. Lloyd, 2017, Applied and Environmental Microbiology.

Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility

Adam M. Feist, Anand V. Sastry, B. Palsson, 2021, mSphere.

Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae.

Adam M. Feist, Kiran Raosaheb Patil, Paula Jouhten, 2018, Metabolic engineering.

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data

Adam M. Feist, Bernhard O. Palsson, Jean-Christophe Lachance, 2019, PLoS Comput. Biol..

A pH and solvent optimized reverse-phase ion-paring-LC–MS/MS method that leverages multiple scan-types for targeted absolute quantification of intracellular metabolites

Adam M. Feist, A. Feist, D. McCloskey, 2015, Metabolomics.

What do cells actually want?

B. Palsson, A. Feist, 2016, Genome Biology.

Selection for Cell Yield Does Not Reduce Overflow Metabolism in Escherichia coli

Adam M. Feist, F. Bruggeman, B. Teusink, 2021, Molecular biology and evolution.

Selection for cell yield does not reduce overflow metabolism in E. coli

Adam M. Feist, F. Bruggeman, B. Teusink, 2021, bioRxiv.

Genome‐scale metabolic modeling reveals key features of a minimal gene set

Adam M. Feist, Zachary A. King, Jonathan M. Monk, 2021, Molecular systems biology.

Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion

Edward J. O'Brien, Adam M. Feist, Bernhard O Palsson, 2016, bioRxiv.

Memote: A community driven effort towards a standardized genome-scale metabolic model test suite

Steffen Klamt, Anne Richelle, Hyun Uk Kim, 2018, bioRxiv.

MEMOTE for standardized genome-scale metabolic model testing

Ronan M. T. Fleming, Adam M. Feist, Zachary A. King, 2020, Nature Biotechnology.

Directed Metabolic Pathway Evolution Enables Functional Pterin-Dependent Aromatic-Amino-Acid Hydroxylation in Escherichia coli.

Adam M. Feist, Markus J. Herrgård, B. Palsson, 2020, ACS synthetic biology.

Characterizing the response of Acinetobacter baumannii ATCC 17978 to azithromycin in multiple in vitro growth conditions

Adam M. Feist, Jonathan M. Monk, Connor A. Olson, 2020, bioRxiv.

Adaptive laboratory evolution of Bacillus subtilis to overcome toxicity of lignocellulosic hydrolysate derived from Distiller's dried grains with solubles (DDGS)

Adam M. Feist, A. Feist, S. Mussatto, 2023, Metabolic engineering communications.

Cellular responses to reactive oxygen species can be predicted on multiple biological scales from molecular mechanisms

Justin Tan, Donghyuk Kim, Richard Szubin, 2017 .

Coupling S-adenosylmethionine–dependent methylation to growth: Design and uses

Adam M. Feist, Bernhard O Palsson, Jay D Keasling, 2019, PLoS biology.

Growth Adaptation of gnd and sdhCB Escherichia coli Deletion Strains Diverges From a Similar Initial Perturbation of the Transcriptome

Adam M. Feist, Troy E. Sandberg, B. Palsson, 2018, bioRxiv.

Lab evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance

Adam M. Feist, Anand V. Sastry, Connor A. Olson, 2022, bioRxiv.

Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration

Adam M. Feist, Anand V. Sastry, Connor A. Olson, 2019, Proceedings of the National Academy of Sciences.

Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network.

Adam M. Feist, Peter E. Larsen, Anand V. Sastry, 2022, Metabolic engineering.

Restoration of fitness lost due to dysregulation of the pyruvate dehydrogenase complex is triggered by ribosomal binding site modifications

Adam M. Feist, Anand V. Sastry, Connor A. Olson, 2021, Cell reports.

Pseudogene repair driven by selection pressure applied in experimental evolution

Adam M. Feist, Anand V. Sastry, Connor A. Olson, 2019, Nature Microbiology.

A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology

Aarash Bordbar, Adam M. Feist, Bernhard O. Palsson, 2011, BMC Systems Biology.

Lipid and carotenoid production from wheat straw hydrolysates by different oleaginous yeasts

Adam M. Feist, A. Feist, S. Mussatto, 2020 .

Next-generation genome-scale models for metabolic engineering.

Adam M. Feist, Bernhard O Palsson, Zachary A. King, 2015, Current opinion in biotechnology.

Identification of growth-coupled production strains considering protein costs and kinetic variability

Adam M. Feist, Bernhard O. Palsson, Hoang V. Dinh, 2018, Metabolic engineering communications.

Sulfide-driven microbial electrosynthesis.

Adam M. Feist, Karsten Zengler, Tian Zhang, 2013, Environmental science & technology.

Fast Swinnex filtration (FSF): a fast and robust sampling and extraction method suitable for metabolomics analysis of cultures grown in complex media

Adam M. Feist, B. Palsson, A. Feist, 2015, Metabolomics.

Underground metabolism: network-level perspective and biotechnological potential.

Adam M. Feist, Balázs Papp, Adam M Feist, 2018, Current opinion in biotechnology.

Revealing oxidative pentose metabolism in new Pseudomonas putida isolates

Adam M. Feist, B. Simmons, A. Feist, 2022, Environmental microbiology.

Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism

Edward J. O'Brien, Adam M. Feist, Bernhard O. Palsson, 2018, bioRxiv.

Experimental Approach . Step 1 : Abiotic Oxidation Step

Adam M. Feist, A. Feist, D. Lovley, 2012 .

Generation of Pseudomonas putida KT2440 Strains with Efficient Utilization of Xylose and Galactose via Adaptive Laboratory Evolution

Adam M. Feist, B. Palsson, B. Simmons, 2021, ACS Sustainable Chemistry & Engineering.

Strain-Specific Metabolic Requirements Revealed by a Defined Minimal Medium for Systems Analyses of Staphylococcus aureus

Adam M. Feist, Jonathan M. Monk, Liam L Weng, 2019, Applied and Environmental Microbiology.

Evolution of gene knockout strains of E. coli reveal regulatory architectures governed by metabolism

Troy E. Sandberg, A. Feist, D. McCloskey, 2018, Nature Communications.

Constraint-Based Modeling of Carbon Fixation and the Energetics of Electron Transfer in Geobacter metallireducens

Adam M. Feist, Karsten Zengler, Derek R. Lovley, 2014, PLoS Comput. Biol..

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

Adam M. Feist, P. Karp, M. Krummenacker, 2007, Molecular systems biology.

Have you tried turning it off and on again? Oscillating selection to enhance fitness-landscape traversal in adaptive laboratory evolution experiments

Adam M. Feist, I. Paulsen, A. Feist, 2023, Metabolic engineering communications.