S. Hassoun

Soha Hassoun, Carl Ebeling, S. Hassoun, 1998, 1998 IEEE/ACM International Conference on Computer-Aided Design. Digest of Technical Papers (IEEE Cat. No.98CB36287).

Designing TSVs for 3D Integrated Circuits

Soha Hassoun, Nauman H. Khan, S. Hassoun, 2012, Springer Briefs in Electrical and Computer Engineering.

Early Estimation of TSV Area for Power Delivery in 3-D ICs

Nauman Khan, Nauman H. Khan, Soha Hassoun, 2013 .

TSVs for Power Delivery

Nauman Khan, Nauman H. Khan, Soha Hassoun, 2013 .

The feasibility of Carbon Nanotubes for power delivery in 3-D Integrated Circuits

Soha Hassoun, Nauman H. Khan, S. Hassoun, 2012, 17th Asia and South Pacific Design Automation Conference.

Biotechnology and Bioengineering

Sara A. Amin, Nikhil U. Nair, S. Hassoun, 2019 .

Ensemble Spectral Prediction (ESP) Model for Metabolite Annotation

S. Hassoun, Hao Zhu, Liping Liu, 2022, ArXiv.

Enzyme promiscuity prediction using hierarchy-informed multi-label classification

Gian Marco Visani, S. Hassoun, M. Hughes, 2021, Bioinformatics.

Longitudinal Analysis of the Intestinal Microbiota in Persistently Stunted Young Children in South India

G. Kang, S. Hassoun, E. Naumova, 2016, PloS one.

ASAP-SML: An antibody sequence analysis pipeline using statistical testing and machine learning

S. Hassoun, J. V. Deventer, Xinmeng Li, 2020, PLoS Comput. Biol..

Pathway-Activity Likelihood Analysis and Metabolite Annotation for Untargeted Metabolomics Using Probabilistic Modeling

S. Hassoun, Neda Hassanpour, Liping Liu, 2019, Metabolites.

Pathway Activity Analysis and Metabolite Annotation for Untargeted Metabolomics using Probabilistic Modeling pdf

Soha Hassoun, Neda Hassanpour, Ramtin Hosseini, 2019, ArXiv.

Recent advances in mass spectrometry-based computational metabolomics.

T. Ebbels, Nicola Zamboni, S. Hassoun, 2023, Current opinion in chemical biology.

Using Graph Neural Networks for Mass Spectrometry Prediction pdf

Soha Hassoun, Hao Zhu, Liping Liu, 2020, ArXiv.

Biological Filtering and Substrate Promiscuity Prediction for Annotating Untargeted Metabolomics

Soha Hassoun, Arul Jayaraman, Neda Hassanpour, 2019, bioRxiv.

PROXIMAL: a method for Prediction of Xenobiotic Metabolism

Soha Hassoun, Kyongbum Lee, Mona Yousofshahi, 2015, BMC Systems Biology.

Optimization of synchronous circuits

Tiziano Villa, Soha Hassoun, S. Hassoun, 2001 .

Using graph neural networks for site-of-metabolism prediction and its applications to ranking promiscuous enzymatic products

S. Hassoun, V. Porokhin, Liping Liu, 2023, Bioinform..

Fin Shape Impact on FinFET Leakage With Application to Multithreshold and Ultralow-Leakage FinFET Design

Soha Hassoun, Brad D. Gaynor, S. Hassoun, 2014, IEEE Transactions on Electron Devices.

Gate sizing: finFETs vs 32nm bulk MOSFETs

Soha Hassoun, Brian Swahn, S. Hassoun, 2006, 2006 43rd ACM/IEEE Design Automation Conference.

Establishing synthesis pathway‐host compatibility via enzyme solubility

Soha Hassoun, Sara A. Amin, Nikhil U. Nair, 2019, Biotechnology and bioengineering.

Towards creating an extended metabolic model (EMM) for E. coli using enzyme promiscuity prediction and metabolomics data

Soha Hassoun, Sara A. Amin, Nikhil U. Nair, 2019, bioRxiv.

Establishing Synthesis Pathway-Host Compatibility via Enzyme Solubility

Soha Hassoun, Sara A. Amin, Venkatesh Endalur Gopinarayanan, 2018, bioRxiv.

Stochastic Iterative Graph Matching pdf

Soha Hassoun, Michael C. Hughes, Li-Ping Liu, 2021, ICML.

Fast, accurate a priori routing delay estimation

Soha Hassoun, Sherief Reda, Jinhai Qiu, 2010, SLIP '10.

Learning graph representations of biochemical networks and its application to enzymatic link prediction

Soha Hassoun, Li-Ping Liu, Julie Jiang, 2020, Bioinform..

Logic Synthesis and Verification

Tsutomu Sasao, Soha Hassoun, S. Hassoun, 2013 .

An algorithm for identifying dominant-edge metabolic pathways

Soha Hassoun, Ehsan Ullah, Kyongbum Lee, 2009, 2009 IEEE/ACM International Conference on Computer-Aided Design - Digest of Technical Papers.

Optimal buffered routing path constructions for single and multiple clock domain systems

C. Alpert, S. Hassoun, Meera Thiagarajan, 2002, IEEE/ACM International Conference on Computer Aided Design, 2002. ICCAD 2002..

Probabilistic pathway construction.

Soha Hassoun, Kyongbum Lee, Mona Yousofshahi, 2011, Metabolic engineering.

Artificial Intelligence for Biology.

Brian J. Stucky, S. Hassoun, E. Rosa, 2021, Integrative and comparative biology.

Simulation Methodology and Evaluation of Through Silicon Via (TSV)-FinFET Noise Coupling in 3-D Integrated Circuits

Soha Hassoun, Brad D. Gaynor, S. Hassoun, 2015, IEEE Transactions on Very Large Scale Integration (VLSI) Systems.

Power Delivery Design for 3-D ICs Using Different Through-Silicon Via (TSV) Technologies

Soha Hassoun, Syed M. Alam, Nauman H. Khan, 2011, IEEE Transactions on Very Large Scale Integration (VLSI) Systems.

ProSol DB: A Protein Solubility Database

Soha Hassoun, Sara A. Amin, Venkatesh Endalur Gopinarayanan, 2017, BCB.

Genetic/bio design automation for (re-)engineering biological systems

Soha Hassoun, S. Hassoun, 2012, 2012 Design, Automation & Test in Europe Conference & Exhibition (DATE).

A 200 MHz 64 b dual-issue CMOS microprocessor

Burton M. Leary, S. Santhanam, D. Dobberpuhl, 1992, 1992 IEEE International Solid-State Circuits Conference Digest of Technical Papers.

Selection Finder (SelFi): A computational metabolic engineering tool to enable directed evolution of enzymes

Soha Hassoun, Ehsan Ullah, Nikhil U. Nair, 2017, Metabolic engineering communications.

MC3: a steady-state model and constraint consistency checker for biochemical networks

Soha Hassoun, Ehsan Ullah, Mona Yousofshahi, 2013, BMC Systems Biology.

PreProPath: An Uncertainty-Aware Algorithm for Identifying Predictable Profitable Pathways in Biochemical Networks

Soha Hassoun, Ehsan Ullah, Kyongbum Lee, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Identification of Biochemical Network Modules Based on Shortest Retroactive Distances

Soha Hassoun, Kyongbum Lee, Gautham Vivek Sridharan, 2011, PLoS Comput. Biol..

Practices for recruiting and retaining graduate women students in computer science and engineering

Soha Hassoun, Soheila Bana, S. Hassoun, 2001, Proceedings 2001 International Conference on Microelectronic Systems Education.

Architecture of a message-driven processor

Andrew A. Chien, William J. Dally, Soha Hassoun, 1987, ISCA '98.

System-level comparison of power delivery design for 2D and 3D ICs

Soha Hassoun, Syed M. Alam, Nauman H. Khan, 2009, 2009 IEEE International Conference on 3D System Integration.

Extending PROXIMAL to predict degradation pathways of phenolic compounds in the human gut microbiota

S. Hassoun, Telmo Blasco, S. Pérez-Burillo, 2023, bioRxiv.

Probabilistic strain optimization under constraint uncertainty

Soha Hassoun, Kyongbum Lee, Michael Orshansky, 2013, BMC Systems Biology.

Metabolic Flux-Based Modularity using Shortest Retroactive distances

Soha Hassoun, Kyongbum Lee, Gautham Vivek Sridharan, 2012, BMC Systems Biology.

Boost-RS: boosted embeddings for recommender systems and its application to enzyme–substrate interaction prediction pdf

Soha Hassoun, Xinmeng Li, Li-ping Liu, 2021, Bioinform..

gEFM: An Algorithm for Computing Elementary Flux Modes Using Graph Traversal

Ehsan Ullah, S. Aeron, S. Hassoun, 2016, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Evolving soft robotic locomotion in PhysX

Soha Hassoun, John Rieffel, Jason H. Rife, 2009, GECCO '09.

Fine grain incremental rescheduling via architectural retiming

Soha Hassoun, S. Hassoun, 1998, Proceedings. 11th International Symposium on System Synthesis (Cat. No.98EX210).

Using precomputation in architecture and logic resynthesis

S. Hassoun, C. Ebeling, S. Hassoun, 1998, 1998 IEEE/ACM International Conference on Computer-Aided Design. Digest of Technical Papers (IEEE Cat. No.98CB36287).

METS: a metric for electro-thermal sensitivity, and its application to FinFETs

Soha Hassoun, Brian Swahn, S. Hassoun, 2006, 7th International Symposium on Quality Electronic Design (ISQED'06).

Hardware Scheduling for dynamic adaptability using external profiling and hardware threading

S. Hassoun, Brian Swahn, 2003, ICCAD-2003. International Conference on Computer Aided Design (IEEE Cat. No.03CH37486).

Towards scaling elementary flux mode computation

Soha Hassoun, Ehsan Ullah, Mona Yosafshahi, 2019, Briefings Bioinform..

Discovery of substrate cycles in large scale metabolic networks using hierarchical modularity

Soha Hassoun, Ehsan Ullah, Kyongbum Lee, 2015, BMC Systems Biology.

Computational prediction of functional abortive RNA in E. coli.

Nikhil U. Nair, S. Hassoun, Jeremy Marcus, 2017, Genomics.

Gene modification identification under flux capacity uncertainty

Soha Hassoun, Kyongbum Lee, Michael Orshansky, 2013, 2013 50th ACM/EDAC/IEEE Design Automation Conference (DAC).

Pathway Enrichment Analysis for Untargeted Metabolomics

Soha Hassoun, Xinmeng Li, Vladimir Porokhin, 2017, BCB.