I. Kratchmarova

发表

Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics

M. Mann, B. Blagoev, S. Ong, 2004, Nature Biotechnology.

Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics*

M. Mann, A. Pandey, B. Blagoev, 2002, Molecular & Cellular Proteomics.

Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC).

M. Mann, S. Ong, I. Kratchmarova, 2003, Journal of proteome research.

System-Wide Temporal Characterization of the Proteome and Phosphoproteome of Human Embryonic Stem Cell Differentiation

M. Mann, J. Olsen, B. Blagoev, 2011, Science Signaling.

Temporal Profiling and Pulsed SILAC Labeling Identify Novel Secreted Proteins During Ex Vivo Osteoblast Differentiation of Human Stromal Stem Cells*

I. Kratchmarova, J. Andersen, M. Kassem, 2012, Molecular & Cellular Proteomics.

Regulation of Epidermal Growth Factor Receptor Trafficking by Lysine Deacetylase HDAC6

Y. Kalaidzidis, I. Jurisica, B. Blagoev, 2009, Science Signaling.

Mechanism of Divergent Growth Factor Effects in Mesenchymal Stem Cell Differentiation

Blagoy Blagoev, Matthias Mann, Moustapha Kassem, 2005, Science.

Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases

Troels Z. Kristiansen, M. Mann, A. Podtelejnikov, 2002, Oncogene.

StUbEx: Stable tagged ubiquitin exchange system for the global investigation of cellular ubiquitination.

Kristoffer T G Rigbolt, Blagoy Blagoev, Irina Kratchmarova, 2012, Journal of proteome research.

Mapping protein-protein interactions by quantitative proteomics.

Blagoy Blagoev, Irina Kratchmarova, B. Blagoev, 2010, Methods in molecular biology.

Cloning of a novel signaling molecule, AMSH-2, that potentiates transforming growth factor β signaling

Akhilesh Pandey, Matthias Mann, Nieves Ibarrola, 2004, BMC Cell Biology.

University of Southern Denmark Cylindromatosis Tumor Suppressor Protein (CYLD) Deubiquitinase is Necessary for Proper Ubiquitination and Degradation of the Epidermal Growth Factor Receptor Sanchez-Quiles,

B. Blagoev, J. Olsen, I. Kratchmarova, 2017 .

Syddansk Universitet Cylindromatosis Tumor Suppressor Protein ( CYLD ) Deubiquitinase is Necessary for Proper Ubiquitination and Degradation of the Epidermal Growth Factor Receptor

B. Blagoev, J. Olsen, I. Kratchmarova, 2017 .

Cylindromatosis Tumor Suppressor Protein (CYLD) Deubiquitinase is Necessary for Proper Ubiquitination and Degradation of the Epidermal Growth Factor Receptor*

B. Blagoev, J. Olsen, I. Kratchmarova, 2017, Molecular & Cellular Proteomics.

Development of novel monoclonal antibodies that define differentiation stages of human stromal (mesenchymal) stem cells

A. Zannettino, I. Kratchmarova, O. Jensen, 2011, Molecules and cells.

Cellular Proteome Dynamics during Differentiation of Human Primary Myoblasts.

B. Blagoev, I. Kratchmarova, A. Bigot, 2015, Journal of proteome research.

Stable Tagged Ubiquitin Exchange System for Peptide Level Puri fi cation and In-Depth Mapping of Ubiquitination Sites

B. Blagoev, I. Kratchmarova, V. Akimov, 2022 .

Fundamental constraints in synchronous muscle limit superfast motor control in vertebrates

C. Scharff, B. Blagoev, I. Kratchmarova, 2017, bioRxiv.

Targeted mass spectrometry: An emerging powerful approach to unblock the bottleneck in phosphoproteomics.

I. Kratchmarova, K. Aloria, M. J. Omaetxebarria, 2017, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes

B. Blagoev, I. Kratchmarova, Virginia Sanchez-Quiles, 2016, Scientific Reports.

A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling

Blagoy Blagoev, Leonard J. Foster, Matthias Mann, 2003, Nature Biotechnology.

Role of adipocyte lipid-binding protein (ALBP) and acyl-coA binding protein (ACBP) in PPAR-mediated transactivation.

K. Kristiansen, I. Kratchmarova, S. Mandrup, 2002 .

Role of adipocyte lipid-binding protein (ALBP) and acyl-CoA binding protein (ACBP) in PPAR-mediated transactivation

K. Kristiansen, I. Kratchmarova, Forename Surname, 2004, Molecular and Cellular Biochemistry.

Microaffinity columns for analysis of protein-protein interactions.

K. Kristiansen, I. Kratchmarova, S. Mandrup, 1999, Analytical biochemistry.

Opposing Effects of Fatty Acids and Acyl‐CoA Esters on Conformation and Cofactor Recruitment of Peroxisome Proliferator‐Activated Receptors

K. Kristiansen, T. Willson, I. Kratchmarova, 2002, Annals of the New York Academy of Sciences.

Peroxisome proliferator-activated receptor gamma recruits the positive transcription elongation factor b complex to activate transcription and promote adipogenesis.

K. Kristiansen, I. Kratchmarova, J. Hansen, 2006, Molecular endocrinology.

Dynamics of the Skeletal Muscle Secretome during Myoblast Differentiation*

B. Blagoev, I. Kratchmarova, B. Pedersen, 2010, Molecular & Cellular Proteomics.

PPAR γγγγ Recruits the P-TEFb Complex to Activate Transcription and Promote Adipogenesis

K. Kristiansen, I. Kratchmarova, M. Benkirane, 2007 .

Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6

M. Mann, B. Blagoev, I. Kratchmarova, 2006, Nature.

Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and Quantitative Comparison of the Membrane Proteomes of Self-renewing and Differentiating Human Embryonic Stem Cells*S

B. Blagoev, I. Kratchmarova, J. Henningsen, 2009, Molecular & Cellular Proteomics.

A Proteomic Approach for Identification of Secreted Proteins during the Differentiation of 3T3-L1 Preadipocytes to Adipocytes*

K. Kristiansen, M. Mann, A. Podtelejnikov, 2002, Molecular & Cellular Proteomics.

Dissection of the insulin signaling pathway via quantitative phosphoproteomics

M. Mann, B. Blagoev, I. Kratchmarova, 2008, Proceedings of the National Academy of Sciences.

Characterization of Receptor-Associated Protein Complex Assembly in Interleukin (IL)-2- and IL-15-Activated T-Cell Lines.

B. Blagoev, I. Kratchmarova, V. Akimov, 2017, Journal of proteome research.

Simultaneous dissection and comparison of IL‐2 and IL‐15 signaling pathways by global quantitative phosphoproteomics

B. Blagoev, I. Kratchmarova, B. Guerra, 2015, Proteomics.

Interleukin-2 signaling pathway analysis by quantitative phosphoproteomics.

B. Blagoev, I. Kratchmarova, A. Fullaondo, 2011, Journal of proteomics.

CYLD contributes to ubiquitination and degradation of EGFR

J. Olsen, I. Kratchmarova, C. Francavilla, 2022 .

UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites

Dorte B. Bekker-Jensen, B. Blagoev, J. Olsen, 2018, Nature Structural & Molecular Biology.

UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites

Blagoy Blagoev, Jesper V Olsen, Irina Kratchmarova, 2018, Nature Structural & Molecular Biology.

Quantitative analysis of HGF and EGF-dependent phosphotyrosine signaling networks.

Blagoy Blagoev, Irina Kratchmarova, Robert J Beynon, 2010, Journal of proteome research.

Receptor tyrosine kinase signaling: a view from quantitative proteomics.

Blagoy Blagoev, Irina Kratchmarova, B. Blagoev, 2009, Molecular bioSystems.

Temporal Dynamics of EGF Receptor Signaling by Quantitative Proteomics

M. Mann, B. Blagoev, I. Kratchmarova, 2008 .

Modulation of keratinocyte gene expression and differentiation by PPAR-selective ligands and tetradecylthioacetic acid.

K. Kristiansen, L. Bolund, I. Kratchmarova, 2001, The Journal of investigative dermatology.

Phosphoproteomic and Functional Analyses Reveal Sperm-specific Protein Changes Downstream of Kappa Opioid Receptor in Human Spermatozoa*

B. Blagoev, I. Kratchmarova, J. Irazusta, 2019, Molecular & Cellular Proteomics.

Quantitative analysis of the secretion of the MCP family of chemokines by muscle cells.

I. Kratchmarova, B. Pedersen, J. Henningsen, 2011, Molecular bioSystems.

Kappa- opioid receptor regulates human sperm functions via SPANX-A/D protein family.

B. Blagoev, I. Kratchmarova, V. Akimov, 2020, Reproductive biology.

Phosphoproteomic profiling reveals a defined genetic program for osteoblastic lineage commitment of human bone marrow–derived stromal stem cells

B. Blagoev, I. Kratchmarova, K. G. Rigbolt, 2019, Genome research.

Analysis of secreted proteins using SILAC.

B. Blagoev, I. Kratchmarova, J. Henningsen, 2014, Methods in molecular biology.

Quantitative Proteomics for Investigation of Secreted Factors: Focus on Muscle Secretome

B. Blagoev, I. Kratchmarova, J. Henningsen, 2012 .

Data on interleukin (IL)-2- and IL-15-dependent changes in IL-2Rβ and IL-2Rγ complexes

B. Blagoev, I. Kratchmarova, Virginia Sanchez-Quiles, 2017, Data in brief.

Nuclear Phosphoproteomic Screen Uncovers ACLY as Mediator of IL-2-induced Proliferation of CD4+ T lymphocytes*

B. Blagoev, I. Kratchmarova, V. Akimov, 2016, Molecular & Cellular Proteomics.

SILAC-based quantification of changes in protein tyrosine phosphorylation induced by Interleukin-2 (IL-2) and IL-15 in T-lymphocytes

B. Blagoev, I. Kratchmarova, V. Akimov, 2015, Data in brief.

Inhibition of Adipocyte Differentiation by Resistin-like Molecule α

K. Kristiansen, M. Mann, A. Pandey, 2002, The Journal of Biological Chemistry.

Stable isotope labeling by amino acids in cell culture (SILAC).

B. Blagoev, I. Kratchmarova, D. B. Kristensen, 2008, Methods in molecular biology.

Chapter 54 – Stable Isotope Labeling by Amino Acids in Cell Culture for Quantitative Proteomics

M. Mann, B. Blagoev, L. Foster, 2006 .

The multifunctional role of SPANX-A/D protein subfamily in the promotion of pro-tumoural processes in human melanoma

B. Blagoev, I. Kratchmarova, V. Akimov, 2021, Scientific Reports.

Adipose MDM2 regulates systemic insulin sensitivity

Christer S. Ejsing, K. Kristiansen, B. Jensen, 2021, Scientific Reports.

SPANX-A/D protein subfamily plays a key role in nuclear organisation, metabolism and flagellar motility of human spermatozoa

B. Blagoev, I. Kratchmarova, V. Akimov, 2020, Scientific Reports.

University of Southern Denmark Cylindromatosis Tumor Suppressor Protein ( CYLD ) Deubiquitinase is Necessary for Proper Ubiquitination and Degradation of the Epidermal Growth Factor Receptor

B. Blagoev, J. Olsen, I. Kratchmarova, 2017 .

CYLD deubiquitinase is necessary for proper ubiquitination and degradation of the epidermal growth factor receptor

B. Blagoev, J. Olsen, I. Kratchmarova, 2017 .

UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites

Dorte B. Bekker-Jensen, B. Blagoev, J. Olsen, 2018, Nature Structural & Molecular Biology.

A Novel Src Homology 2 Domain-containing Molecule, Src-like Adapter Protein-2 (SLAP-2), Which Negatively Regulates T Cell Receptor Signaling*

M. Mann, H. Lodish, A. Pandey, 2002, The Journal of Biological Chemistry.

Characterization of promoter region and genomic structure of the murine and human genes encoding Src like adapter protein.

A. Pandey, I. Kratchmarova, C. Vincenz, 2001, Gene.

Acyl-CoA Esters Antagonize the Effects of Ligands on Peroxisome Proliferator-activated Receptor α Conformation, DNA Binding, and Interaction with Co-factors*

K. Kristiansen, I. Kratchmarova, S. Mandrup, 2001, The Journal of Biological Chemistry.

NADH dehydrogenase complex I is overexpressed in incipient metastatic murine colon cancer cells

I. Kratchmarova, V. Akimov, G. Ibarretxe, 2018, Oncology reports.

StUbEx PLUS-A Modified Stable Tagged Ubiquitin Exchange System for Peptide Level Purification and In-Depth Mapping of Ubiquitination Sites.

Blagoy Blagoev, Ilia A Solov'yov, Irina Kratchmarova, 2018, Journal of proteome research.

Automatic inducer addition and harvesting of recombinant Escherichia coli cultures based on indirect on-line estimation of biomass concentration and specific growth rate.

K. Kristiansen, I. Kratchmarova, N. T. Eriksen, 2001, Biotechnology and bioengineering.

Deacetylase HDAC 6 Regulation of Epidermal Growth Factor Receptor Trafficking by Lysine

Y. Kalaidzidis, I. Jurisica, B. Blagoev, 2009 .

SPANX-A/D protein subfamily plays a key role in nuclear organisation, metabolism and flagellar motility of human spermatozoa

B. Blagoev, I. Kratchmarova, V. Akimov, 2020, Scientific Reports.

Phosphoproteomic and Functional Analyses Reveal Sperm-specific Protein Changes Downstream of Kappa Opioid Receptor in Human Spermatozoa.

B. Blagoev, I. Kratchmarova, J. Irazusta, 2019, Molecular & cellular proteomics : MCP.

Simultaneous dissection and comparison of IL‐2 and IL‐15 signaling pathways by global quantitative phosphoproteomics

B. Blagoev, I. Kratchmarova, B. Guerra, 2015, Proteomics.

Syddansk Universitet NADH dehydrogenase complex I is overexpressed in incipient metastatic murine colon cancer cells Marquez,

I. Kratchmarova, V. Akimov, G. Ibarretxe, 2018 .

Stable isotope labeling by amino acids in cell culture (SILAC).

B. Blagoev, I. Kratchmarova, D. B. Kristensen, 2008, Methods in molecular biology.