Sheng Li

发表

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium

David P. Kreil, Todd M. Smith, Thomas M. Blomquist, 2014, Nature Biotechnology.

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

Francine E. Garrett-Bakelman, C. Mason, Sheng Li, 2012, Genome Biology.

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures

David P. Kreil, Steven P. Lund, Paweł P. Łabaj, 2014, Nature Communications.

The pivotal regulatory landscape of RNA modifications.

Sheng Li, Christopher E Mason, C. Mason, 2014, Annual review of genomics and human genetics.

A benchmark for RNA-seq quantification pipelines

Dmitri D. Pervouchine, C. Mason, R. Irizarry, 2016, Genome Biology.

Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia

Francine E. Garrett-Bakelman, Anna L. Brown, C. Mason, 2016, Nature Medicine.

Detecting and correcting systematic variation in large-scale RNA sequencing data

Wei Shi, Leming Shi, Jean Thierry-Mieg, 2014, Nature Biotechnology.

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study

Sheng Li, Paul Zumbo, Shawn Levy, 2014, Nature Biotechnology.

Erratum: A benchmark for RNA-seq quantification pipelines [Genome Biol. (2016), 17, 74], DOI: 10.1186/s13059-016-0940-1

Xintao Wei, Mingxiang Teng, Rafael A. Irizarry, 2016 .

Erratum: Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study

Todd M. Smith, May D. Wang, C. Mason, 2014, Nature Biotechnology.

Somatic mutations drive specific, but reversible epigenetic heterogeneity states in AML.

C. Mason, Sheng Li, Jiahui Wang, 2020, Cancer discovery.

A benchmark for RNAseq quantification pipelines

C. Mason, R. Irizarry, S. Djebali, 2016 .

Deletion of Asxl1 results in myelodysplasia and severe developmental defects in vivo

C. Mason, B. Bernstein, Mazhar Adli, 2013, The Journal of experimental medicine.

An optimized algorithm for detecting and annotating regional differential methylation

Sheng Li, Francine E. Garrett-Bakelman, Altuna Akalin, 2013, BMC Bioinformatics.

Relapse specific mutations in NT5C2 in childhood acute lymphoblastic leukemia

W. Evans, C. Mason, Sheng Li, 2013, Nature Genetics.

Jak1 Integrates Cytokine Sensing to Regulate Hematopoietic Stem Cell Function and Stress Hematopoiesis.

G. Nolan, J. Teruya-Feldstein, Sheng Li, 2017, Cell stem cell.

Identification of kinase fusion oncogenes in post-Chernobyl radiation-induced thyroid cancers.

Christopher E Mason, Adriana Heguy, C. Mason, 2013, The Journal of clinical investigation.

An optimized algorithm for detecting and annotating regional differential methylation

Francine E. Garrett-Bakelman, Anna L. Brown, C. Mason, 2013, BMC Bioinformatics.

Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction

May D. Wang, Weida Tong, Leming Shi, 2020, Scientific Reports.

Clinical Genomics: Challenges and Opportunities.

Alexa B. R. McIntyre, Sheng Li, Priyanka Vijay, 2016, Critical reviews in eukaryotic gene expression.

The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics

Jean Thierry-Mieg, Sheng Li, Xinxia Peng, 2012, Nucleic Acids Res..

Dynamic evolution of clonal epialleles revealed by methclone

Sheng Li, Francine E. Garrett-Bakelman, Anna L. Brown, 2014, Genome Biology.

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

Francine E. Garrett-Bakelman, C. Mason, Sheng Li, 2012, Genome Biology.

Genetic and epigenetic heterogeneity in acute myeloid leukemia.

C. Mason, Sheng Li, A. Melnick, 2016, Current opinion in genetics & development.

Nanopore detection of bacterial DNA base modifications

Sheng Li, Alexa B. R. McIntyre, Kristen K. John, 2017, bioRxiv.

Genetic and epigenetic heterogeneity and the impact on cancer relapse.

C. Mason, Sheng Li, Ebrahim Afshinnekoo, 2017, Experimental hematology.

Erratum to: A benchmark for RNA-seq quantification pipelines

C. Mason, R. Irizarry, S. Djebali, 2016, Genome Biology.

An optimized algorithm for detecting and annotating regional differential methylation

Francine E. Garrett-Bakelman, Anna L. Brown, C. Mason, 2013, BMC Bioinformatics.

VNTRseek-A Computational Pipeline to Detect Tandem Repeat Variants in Next-Generation Sequencing Data : Analysis of the 454 Watson Genome

Sheng Li, Francine E. Garrett-Bakelman, Paul Zumbo, 2013 .

The pivotal regulatory landscape of RNA modifications.

C. Mason, Sheng Li, 2014, Annual review of genomics and human genetics.

The ABRF Next Generation Sequencing Study: Multi-platform and Cross-methodological Reproducibility of Transcriptome Profiling by RNA-seq

Christopher E. Mason, Charles M. Nicolet, Scott Tighe, 2014 .

Divergent Dynamics of Epigenetic and Genetic Heterogeneity in Relapsed Acute Myeloid Leukemia

Francine E. Garrett-Bakelman, Anna L. Brown, C. Mason, 2015 .