Zhiyu Peng

发表

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium

David P. Kreil, Todd M. Smith, Thomas M. Blomquist, 2014, Nature Biotechnology.

Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

May D. Wang, Wenwei Zhang, Simon M Lin, 2015, Genome Biology.

Genome-wide identification of RNA editing in hepatocellular carcinoma.

Huanming Yang, Jun Wang, Yingrui Li, 2015, Genomics.

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

Wenwei Zhang, Y. Liang, Xueda Hu, 2012, Nature Biotechnology.

Hypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random Primers

Zhiyu Peng, Siqi Liu, N. Xu, 2015, Journal of Cancer.

Telomerase activation by genomic rearrangements in high-risk neuroblastoma

Simon C Watkins, F. Westermann, F. Berthold, 2015, Nature.

Integrated Profiling of MicroRNAs and mRNAs: MicroRNAs Located on Xq27.3 Associate with Clear Cell Renal Cell Carcinoma

Jing Chen, Zhiyu Peng, Xiaohong Xu, 2010, PloS one.

RNA sequencing reveals the complex regulatory network in the maize kernel

Xiaohong Yang, Jianbing Yan, Zhiyu Peng, 2013, Nature Communications.

Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture

Jun Wang, Songgang Li, Zhiyu Peng, 2005, Genome Biology.

AutoPVS1: An automatic classification tool for PVS1 interpretation of null variants

Zhiyu Peng, Jiale Xiang, Jiguang Peng, 2019, bioRxiv.

The mutational landscape of MYCN, Lin28b and ALKF1174L driven murine neuroblastoma mimics human disease

Sangkyun Lee, F. Speleman, B. Menten, 2017, Oncotarget.

Five novel globin gene mutations identified in five Chinese families by next‐generation sequencing

Zhiyu Peng, J. Zhang, Jing He, 2021, Molecular genetics & genomic medicine.

Noninvasive prenatal diagnosis for Hemophilia A by haplotype-based approach using cell-free fetal DNA in maternal plasma

Peixiang Ni, R. Wu, Zhiyu Peng, 2019, bioRxiv.

Characterizing sensitivity and coverage of clinical WGS as a diagnostic test for genetic disorders

Zhiyu Peng, Hongyun Zhang, Hui Huang, 2020, bioRxiv.

Whole Exome Sequencing Identifies Genes Associated With Non-Obstructive Azoospermia

Zhiyu Peng, Jing Zhao, Hui Huang, 2022, Frontiers in Genetics.

Impact of ultrasonography on identifying noninvasive prenatal screening false‐negative aneuploidy

Zhiyu Peng, Hui Huang, Jing Wu, 2020, Molecular genetics & genomic medicine.

Impact of ultrasonography on identifying noninvasive prenatal screening false‐negative aneuploidy

Zhiyu Peng, Hui Huang, Jing Wu, 2019, bioRxiv.

The effect of hemolysis on quality control metrics for noninvasive prenatal testing

Zhiyu Peng, Dongzhu Lei, W. Tang, 2022, BMC medical genomics.

The oyster genome reveals stress adaptation and complexity of shell formation

Qiang Wang, Ye Yin, Wenjing Fu, 2012, Nature.

Comprehensive genome sequencing analysis as a promising option in the prenatal diagnosis of fetal structural anomalies: a prospective study

Zhiyu Peng, Yaping Yang, Yaping Yang, 2020, bioRxiv.

Next-generation sequencing improves thalassemia carrier screening among premarital adults in a high prevalence population: the Dai nationality, China

K. Ye, Zhiyu Peng, Le Cheng, 2017, Genetics in Medicine.

Identification of a novel breast cancer-causing mutation in the BRCA1 gene by targeted next generation sequencing: A case report.

Zhiyu Peng, S. Banerjee, Hui Huang, 2018, Oncology letters.

Adjuvant chemotherapy may improve long-term outcomes in stage IB non-small cell lung cancer patients with previous malignancies: A propensity score-matched analysis

Zhiyu Peng, J M Cao, J. Mei, 2022, Frontiers in Oncology.

Comprehensive interpretation of single-nucleotide substitutions in GJB2 reveals the genetic and phenotypic landscape of GJB2-related hearing loss

Zhiyu Peng, A. A. Abou Tayoun, S. Ramaswamy, 2022, Human Genetics.

Prognostic role of the platelet to lymphocyte ratio (PLR) in the clinical outcomes of patients with advanced lung cancer receiving immunotherapy: A systematic review and meta-analysis

Zhiyu Peng, J. Mei, Z-X Shen, 2022, Frontiers in Oncology.

Novel loss-of-function mutation in BRCA2 gene identified in a Chinese female with a family history of ovarian cancer: A case report

Zhiyu Peng, S. Banerjee, Fengling Liu, 2019, Oncology letters.

Noninvasive Prenatal Diagnosis for Duchenne Muscular Dystrophy Based on the Direct Haplotype Phasing

Zhiyu Peng, Min Chen, C. Yin, 2019, bioRxiv.

Noninvasive prenatal test of methylmalonic academia cblC type through targeted sequencing of cell-free DNA in maternal plasma

Zhiyu Peng, X. Ji, Xuefan Gu, 2018, bioRxiv.

Increased diagnostic yield by reanalysis of data from a hearing loss gene panel

Zhiyu Peng, Yaping Yang, Yulin Zhou, 2019, BMC Medical Genomics.

Rapid Targeted Next-Generation Sequencing Platform for Molecular Screening and Clinical Genotyping in Subjects with Hemoglobinopathies

Asan, Huanming Yang, Jian Wang, 2017, EBioMedicine.

NGS-based spinal muscular atrophy carrier screening of 10,585 diverse couples in China: a pan-ethnic study

Peixiang Ni, Zhiyu Peng, Shanhuo Yan, 2020, European journal of human genetics : EJHG.

Report of Two Novel Thalassemia Variants, HBB: c.181delG and HBA1: c.121_126delAAGACC, in Chinese Individuals

Zhiyu Peng, Shi-ping Chen, Jun Sun, 2021, Hemoglobin.

Identification of Two Novel Thalassemia Variants, HBA1: c.263delA and HBA2: c.376dupC, in Chinese Individuals

Zhiyu Peng, Shi-ping Chen, Li Liu, 2021, Hemoglobin.

Surgery and chemotherapy cannot improve the survival of patients with early-stage mucosa-associated lymphoid tissue derived primary pulmonary lymphoma

Zhiyu Peng, J. Mei, Jie Cao, 2022, Frontiers in Oncology.

A Novel MLH1 Initiation Codon Mutation (c.3G>T) in a Large Chinese Lynch Syndrome Family with Different Onset Age and mRNA Expression Level

Wei Li, Zhiyu Peng, S. Banerjee, 2018, BioMed research international.

Comprehensive genetic testing improves the clinical diagnosis and medical management of pediatric patients with isolated hearing loss

Zhiyu Peng, Jiale Xiang, Yuan Jin, 2022, BMC medical genomics.

Concurrent hearing and genetic screening in a general newborn population

Huanming Yang, Jian Wang, Zhiyu Peng, 2020, Human Genetics.

Conjunctival Candidiasis Mimicking Ocular Surface Squamous Neoplasia

Zhiyu Peng, J. Qian, Yinan Han, 2021 .

Quantitative T1 mapping MRI for the assessment of extraocular muscle fibrosis in thyroid-associated ophthalmopathy

Zhiyu Peng, J. Qian, Y. Geng, 2021, Endocrine.

RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings

Huanming Yang, Jun Wang, Zhiyu Peng, 2012, Cell Research.

β-thalassemia caused by compound heterozygous mutations and cured by bone marrow transplantation: A case report

Zhiyu Peng, Jindong Chen, Yan Chen, 2017, Molecular medicine reports.

Diagnostic Whole Exome Sequencing in Patients with Short Stature

Asan, Zhiyu Peng, Shi Chen, 2018, bioRxiv.

Severe Thalassemia Caused by Hb Zunyi [β147(HC3)Stop→Gln; HBB: c.442T>C)] on the β-Globin Gene

Zhiyu Peng, Jindong Chen, Yan Chen, 2019, Hemoglobin.

Nationwide population genetic screening improves outcomes of newborn screening for hearing loss in China

Huanming Yang, Jian Wang, Zhiyu Peng, 2018, bioRxiv.

Transcriptome Sequencing and Genome-wide Association Analyses Reveal Lysosomal Function and Actin Cytoskeleton Remodeling in Schizophrenia and Bipolar Disorder

Peilin Jia, Zhongming Zhao, Jingchun Sun, 2014, Molecular Psychiatry.

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

Xiaohong Yang, Jianbing Yan, Zhiyu Peng, 2012, Nature Genetics.

Rapid evolution of protein diversity by de novo origination in Oryza

Zhiyu Peng, M. Long, R. Wing, 2019, Nature Ecology & Evolution.

Frequent alterations in cytoskeleton remodelling genes in primary and metastatic lung adenocarcinomas

Xun Xu, Yong Hou, Zhiyu Peng, 2015, Nature Communications.

Comparative mRNA and microRNA Expression Profiling of Three Genitourinary Cancers Reveals Common Hallmarks and Cancer-Specific Molecular Events

Yong Wang, Zhiyu Peng, Zhiming Cai, 2011, PloS one.

The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation.

Gaurav Kumar Pandey, Leming Shi, Erik Larsson, 2014, Cancer cell.

Caste-specific RNA editomes in the leaf-cutting ant Acromyrmex echinatior

Zhiyu Peng, Wenwei Zhang, Zongji Wang, 2014, Nature Communications.

SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads

Siu-Ming Yiu, Jun Wang, Tak Wah Lam, 2013, Bioinform..

Novel missense variant in TTN cosegregating with familial atrioventricular block.

Zhiyu Peng, Ping Yang, Hui Huang, 2020, European journal of medical genetics.

Identification of TTN as a novel candidate gene for atrioventricular block in a Chinese pedigree by whole-exome sequencing

Zhiyu Peng, Ping Yang, Hui Huang, 2018, bioRxiv.

Applications of Noninvasive Prenatal Testing for Subchromosomal Copy Number Variations Using Cell-Free DNA.

Zhiyu Peng, Jiale Xiang, 2021, Clinics in laboratory medicine.

Deep Sequencing of HIV-Infected Cells: Insights into Nascent Transcription and Host-Directed Therapy

Jun Wang, Xinxia Peng, M. Katze, 2014, Journal of Virology.

Whole Exome Sequencing Identifies Genes Associated With Non-Obstructive Azoospermia

Zhiyu Peng, Hui Huang, Hongguo Zhang, 2020, Frontiers in Genetics.

Familial pityriasis rubra pilaris in a Chinese family caused by a novel mutation in CARD14 gene

Zhiyu Peng, Xiaofang Sun, S. Banerjee, 2019, Indian journal of dermatology, venereology and leprology.

Clinical and genomic evaluation of a Chinese patient with a novel deletion associated with Phelan–McDermid syndrome

Huanming Yang, Jian Wang, Huanhuan Peng, 2016, Oncotarget.

Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma

Lin Li, Shibing Deng, Hongyue Dai, 2013, Genome research.

A systems genetics study of swine illustrates mechanisms underlying human phenotypic traits

S. Friend, Jun Zhu, Zhidong Tu, 2015, BMC Genomics.

Reinterpretation of common pathogenic variants in ClinVar revealed a high proportion of downgrades

Zhiyu Peng, Jiyun Yang, Qing Zhou, 2020, Scientific Reports.

Noninvasive prenatal testing of α-thalassemia and β-thalassemia through population-based parental haplotyping

Peixiang Ni, Zhiyu Peng, Jian Li, 2021, Genome medicine.

Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis

Renhua Wu, Zhiyu Peng, Hui Huang, 2019, BMC Medical Genomics.

Pre-implantation genetic diagnosis for a family with Usher syndrome through targeted sequencing and haplotype analysis

R. Wu, Zhiyu Peng, Hui Huang, 2018 .

Pilot study of expanded carrier screening for 11 recessive diseases in China: results from 10,476 ethnically diverse couples

Asan, Huanming Yang, Jian Wang, 2018, European Journal of Human Genetics.

Increased diagnostic yield by reanalysis of data from a hearing loss gene panel

Zhiyu Peng, Yaping Yang, Yulin Zhou, 2019, BMC Medical Genomics.

Title The oyster genome reveals stress adaptation and complexity ofshell formation

ShanWang, Yaoming, Huanming Yang, 2012 .

RNA Editome in Rhesus Macaque Shaped by Purifying Selection

Minghua Deng, Zhiyu Peng, Chuan-Yun Li, 2014, PLoS genetics.

Lack of evidence for existence of noncanonical RNA editing

Zhiyu Peng, Jun Wang, Zhiyu Peng, 2013, Nature Biotechnology.

Noninvasive prenatal diagnosis of monogenic disorders based on direct haplotype phasing through targeted linked-read sequencing

Zhiyu Peng, Min Chen, Jia Li, 2021, BMC medical genomics.

VIP-HL: Semi-automated ACMG/AMP variant interpretation platform for genetic hearing loss

Zhiyu Peng, Jiguang Peng, Jiale Xiang, 2020, bioRxiv.

Molecular diagnosis of non-syndromic hearing loss patients using a stepwise approach

Zhiyu Peng, Hongyu Luo, Jiale Xiang, 2020, medRxiv.

Next generation sequencing is a highly reliable method to analyze exon 7 deletion of survival motor neuron 1 (SMN1) gene

Zhiyu Peng, Jun Sun, Yaoshen Wang, 2022, Scientific Reports.

Utility of Whole Genome Sequencing for Population Screening of Deafness-Related Genetic Variants and Cytomegalovirus Infection in Newborns

Zhiyu Peng, Jiale Xiang, Jun Sun, 2022, Frontiers in Genetics.

A multiplex PCR amplicon sequencing assay to screen genetic hearing loss variants in newborns

Zhiyu Peng, Jiale Xiang, Guiwei Zhang, 2021, BMC Medical Genomics.

Concurrent hearing and genetic screening in a general newborn population

Huanming Yang, Jian Wang, Zhiyu Peng, 2020, Human Genetics.

Clinical impacts of genome-wide noninvasive prenatal testing for rare autosomal trisomy.

Zhiyu Peng, C. Liao, Dongzhi Li, 2022, American journal of obstetrics & gynecology MFM.

SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Data

Siu-Ming Yiu, Ruiqiang Li, Jinbo Zhang, 2011, Front. Gene..

Performance characterization of PCR-free whole genome sequencing for clinical diagnosis

Zhiyu Peng, Xueqin Guo, Jiansheng Xie, 2020, bioRxiv.

Sequencing, Annotation, and Characterization of the Influenza Ferret Infectome

Stephen S. H. Huang, Zhiyu Peng, D. Banner, 2012, Journal of Virology.

Whole Genome Sequencing in the Evaluation of Fetal Structural Anomalies: A Parallel Test with Chromosomal Microarray Plus Whole Exome Sequencing

Zhiyu Peng, Jian Wang, T. Duan, 2021, Genes.

Comprehensive targeted super-deep next generation sequencing enhances differential diagnosis of solitary pulmonary nodules.

K. Kristiansen, W. Liang, R. Wu, 2018, Journal of thoracic disease.

Comprehensive simulation and interpretation of single nucleotide substitutions in GJB2 reveals the genetic and phenotypic landscape of GJB2-related hearing loss

Zhiyu Peng, A. A. Tayoun, S. Ramaswamy, 2021, bioRxiv.

Pilot study of expanded carrier screening for 11 recessive diseases in China: results from 10,476 ethnically diverse couples

Asan, Huanming Yang, Jian Wang, 2018, European Journal of Human Genetics.

Noninvasive prenatal diagnosis of cobalamin C (cblC) deficiency through target region sequencing of cell‐free DNA in maternal plasma

Zhiyu Peng, X. Ji, Xuefan Gu, 2019, Prenatal diagnosis.

Development and clinical validation of a circulating tumor DNA test for the identification of clinically actionable mutations in nonsmall cell lung cancer

Jian Wang, K. Kristiansen, W. Liang, 2018, Genes, chromosomes & cancer.

A multiplex PCR amplicon sequencing assay to screen genetic hearing loss variants in newborns

Zhiyu Peng, Hongyu Luo, Jiale Xiang, 2021, BMC medical genomics.

The Next Generation of Population-Based DFNB16 Carrier Screening and Diagnosis: STRC Copy-Number Variant Analysis from Genome Sequencing Data.

Zhiyu Peng, S. Pan, Ya Gao, 2023, Clinical chemistry.

Analysis of the Results of Cytomegalovirus Testing Combined with Genetic Testing in Children with Congenital Hearing Loss

Zhiyu Peng, Jiale Xiang, Xiao-zhou Liu, 2022, Journal of clinical medicine.

Next generation sequencing-based molecular profiling of lung adenocarcinoma using pleural effusion specimens.

K. Kristiansen, Zhiyu Peng, M. Ye, 2018, Journal of thoracic disease.

Preimplantation genetic testing for a family with usher syndrome through targeted sequencing and haplotype analysis

Zhiyu Peng, Hui Huang, Wei Li, 2019, BMC Medical Genomics.

Predictive value of pretreatment PD-L1 expression in EGFR-mutant non-small cell lung cancer: a meta-analysis

Zhiyu Peng, Senyi Deng, J. Mei, 2021, World Journal of Surgical Oncology.

PSEA: A phenotypic similarity ensemble approach for prioritizes candidate genes to aid mendelian disease diagnosis

Zhiyu Peng, Chao Chen, Jun Sun, 2021, bioRxiv.

Carrier rate of thalassemia among 25,910 high school students in Shaoguan area, China.

Zhiyu Peng, Jiufeng Li, Xueqin Guo, 2023, Journal of medical screening.

Genomic Sequencing as a First-Tier Screening Test and Outcomes of Newborn Screening

Zhiyu Peng, Xuefan Gu, Jing-kun Miao, 2023, JAMA network open.

AB227. RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings

Jun Wang, Zhiyu Peng, Yongwei Yu, 2012, Cell Research.

Haplotype-Based Noninvasive Prenatal Diagnosis for Duchenne Muscular Dystrophy: A pilot study in South China

R. Wu, Zhiyu Peng, Min Chen, 2019, bioRxiv.

AutoCNV: a semiautomatic CNV interpretation system based on the 2019 ACMG/ClinGen Technical Standards for CNVs

Zhiyu Peng, Manqiu Yang, Hui Huang, 2021, BMC Genomics.

Test development, optimization and validation of a WGS pipeline for genetic disorders

Huanhuan Peng, Zhiyu Peng, Xueqin Guo, 2023, BMC Medical Genomics.