J. Sonke

发表

Respiratory correlated cone beam CT.

M. V. van Herk, J. Sonke, L. Zijp, 2005, Medical physics.

On-the-fly motion-compensated cone-beam CT using an a priori model of the respiratory motion.

S. Rit, M. V. van Herk, J. Sonke, 2009, Medical physics.

Array technology for acoustic wave field analysis in enclosures

J. Sonke, A. Berkhout, D. Vries, 1997 .

Recurrent inference machines for reconstructing heterogeneous MRI data

Jan-Jakob Sonke, Max Welling, Patrick Putzky, 2019, Medical Image Anal..

Replacing pretreatment verification with in vivo EPID dosimetry for prostate IMRT.

M. V. van Herk, J. Sonke, L. McDermott, 2007, International journal of radiation oncology, biology, physics.

Accurate two-dimensional IMRT verification using a back-projection EPID dosimetry method.

M. V. van Herk, J. Sonke, L. McDermott, 2006, Medical physics.

Clinical experience with EPID dosimetry for prostate IMRT pre-treatment dose verification.

M. V. van Herk, J. Sonke, L. McDermott, 2006, Medical physics.

Dynamic Prototype Convolution Network for Few-Shot Semantic Segmentation

E. Gavves, J. Sonke, Guosen Xie, 2022, 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

Mid-ventilation CT scan construction from four-dimensional respiration-correlated CT scans for radiotherapy planning of lung cancer patients.

Jan-Jakob Sonke, Joos V Lebesque, Marcel van Herk, 2006, International journal of radiation oncology, biology, physics.

Comparison of different strategies to use four-dimensional computed tomography in treatment planning for lung cancer patients.

Jan-Jakob Sonke, Joos V Lebesque, Marcel van Herk, 2008, International journal of radiation oncology, biology, physics.

Variability of four-dimensional computed tomography patient models.

Jan-Jakob Sonke, Marcel van Herk, M. V. van Herk, 2008, International journal of radiation oncology, biology, physics.

Frameless stereotactic body radiotherapy for lung cancer using four-dimensional cone beam CT guidance.

Jan-Jakob Sonke, Marcel van Herk, Jose Belderbos, 2009, International journal of radiation oncology, biology, physics.

Adaptive radiotherapy for lung cancer.

Jan-Jakob Sonke, José Belderbos, J. Sonke, 2010, Seminars in radiation oncology.

Quantification of the variability of diaphragm motion and implications for treatment margin construction.

Jan-Jakob Sonke, Simon Rit, Marcel van Herk, 2012, International journal of radiation oncology, biology, physics.

Adaptive Radiotherapy for Anatomical Changes.

Jan-Jakob Sonke, Marianne Aznar, J. Sonke, 2019, Seminars in radiation oncology.

A fast algorithm for gamma evaluation in 3D.

Jan-Jakob Sonke, Marcel van Herk, Ewoud J Smit, 2007, Medical physics.

3D Dosimetric verification of volumetric-modulated arc therapy by portal dosimetry.

Jan-Jakob Sonke, Marcel van Herk, Peter Remeijer, 2010, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Mitigating differential baseline shifts in locally advanced lung cancer patients using an average anatomy model

J. Sonke, J. Belderbos, M. Rossi, 2017, Medical physics.

A simple backprojection algorithm for 3D in vivo EPID dosimetry of IMRT treatments.

Jan-Jakob Sonke, Marcel van Herk, Anton Mans, 2009, Medical physics.

Simplifying EPID dosimetry for IMRT treatment verification.

Jan-Jakob Sonke, Marcel van Herk, Igor Olaciregui-Ruiz, 2011, Medical physics.

Intra thoracic anatomical changes in lung cancer patients during the course of radiotherapy.

Jan-Jakob Sonke, Jose Belderbos, Peter Remeijer, 2014, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Anatomical Changes during Radiotherapy of Lung Cancer Patients

J. Sonke, M. Herk, C. Rasch, 2007 .

Anatomical Changes During Radiotherapy of Lung Cancer Patients

J. Sonke, M. Herk, C. Rasch, 2007 .

Catching errors with in vivo EPID dosimetry.

M van Herk, B Mijnheer, R Tielenburg, 2010, Medical physics.

Catching errors with in vivo EPID dosimetry.

M van Herk, B Mijnheer, R Tielenburg, 2010, Medical physics.

Validation of automatic segmentation of ribs for NTCP modeling.

J. Sonke, J. Belderbos, M. Rossi, 2016, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Retrospective self-sorted 4D-MRI for the liver.

J. Sonke, M. Fast, T. N. van de Lindt, 2018, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Setup uncertainties of anatomical sub-regions in head-and-neck cancer patients after offline CBCT guidance.

Jan-Jakob Sonke, Marcel van Herk, Simon van Kranen, 2009, International journal of radiation oncology, biology, physics.

Robust, independent and relevant prognostic 18F-fluorodeoxyglucose positron emission tomography radiomics features in non-small cell lung cancer: Are there any?

J. Sonke, M. MacManus, W. Vogel, 2020, PloS one.

The developing role of FDG PET imaging for prognostication and radiotherapy target volume delineation in non-small cell lung cancer.

J. Sonke, W. Vogel, J. B. Van de kamer, 2018, Journal of thoracic disease.

Kilo-voltage cone-beam computed tomography setup measurements for lung cancer patients; first clinical results and comparison with electronic portal-imaging device.

Jan-Jakob Sonke, Joos V Lebesque, Marcel van Herk, 2007, International journal of radiation oncology, biology, physics.

Breast patient setup error assessment: comparison of electronic portal image devices and cone-beam computed tomography matching results.

Jan-Jakob Sonke, Jasper Nijkamp, Peter Remeijer, 2010, International journal of radiation oncology, biology, physics.

Directional sinogram interpolation for motion weighted 4D cone-beam CT reconstruction.

Jan-Jakob Sonke, Hua Zhang, J. Sonke, 2017, Physics in medicine and biology.

Radiation pneumonitis in patients treated for malignant pulmonary lesions with hypofractionated radiation therapy.

Jan-Jakob Sonke, Hiroki Shirato, Joos V Lebesque, 2009, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Reconstruction of a time-averaged midposition CT scan for radiotherapy planning of lung cancer patients using deformable registration.

M van Herk, J J Sonke, M. V. van Herk, 2008, Medical physics.

Automatic prostate localization on cone-beam CT scans for high precision image-guided radiotherapy.

Jan-Jakob Sonke, David A Jaffray, Joos V Lebesque, 2005, International journal of radiation oncology, biology, physics.

3D in vivo dose verification of entire hypo-fractionated IMRT treatments using an EPID and cone-beam CT.

Jan-Jakob Sonke, Marcel van Herk, Jasper Nijkamp, 2008, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

The prognostic value of volumetric changes of the primary tumor measured on Cone Beam-CT during radiotherapy for concurrent chemoradiation in NSCLC patients.

J. Sonke, J. Belderbos, M. Rossi, 2020, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

UvA-DARE ( Digital Academic Repository ) ( Un-) certainties in radiotherapy of rectal cancer

J. Sonke, P. Remeijer, C. V. Vliet-Vroegindeweij, 2012 .

A novel method for megavoltage scatter correction in cone-beam CT acquired concurrent with rotational irradiation.

Jan-Jakob Sonke, Marcel van Herk, M. V. van Herk, 2011, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Effects of setup errors and shape changes on breast radiotherapy.

M. V. van Herk, J. Sonke, S. V. van Kranen, 2011, International journal of radiation oncology, biology, physics.

Adaptive radiotherapy for prostate cancer using kilovoltage cone-beam computed tomography: first clinical results.

Jan-Jakob Sonke, Joos V Lebesque, Jasper Nijkamp, 2008, International journal of radiation oncology, biology, physics.

Breast-conserving therapy: radiotherapy margins for breast tumor bed boost.

Jan-Jakob Sonke, Jasper Nijkamp, Peter Remeijer, 2008, International journal of radiation oncology, biology, physics.

Supine Breast MRI Using Respiratory Triggering.

Jan-Jakob Sonke, Tanja Alderliesten, Jasper Nijkamp, 2017, Academic radiology.

Multiple training interventions significantly improve reproducibility of PET/CT-based lung cancer radiotherapy target volume delineation using an IAEA study protocol.

J. Sonke, D. Thorwarth, G. Hanna, 2016, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Quality assurance for image-guided radiation therapy utilizing CT-based technologies: a report of the AAPM TG-179.

Jan-Jakob Sonke, Jean Pouliot, Moyed Miften, 2012, Medical physics.

Effect of compressed sensing reconstruction on target and organ delineation in cone-beam CT of head-and-neck and breast cancer patients.

J. Sonke, Hua Zhang, W. Tan, 2014, Radiotherapy and Oncology.

A population based statistical model for daily geometric variations in the thorax.

M. V. van Herk, J. Sonke, M. Witte, 2017, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

The first implementation of respiratory triggered 4DCBCT on a linear accelerator

Jan-Jakob Sonke, Paul J Keall, Chun-Chien Shieh, 2016, Physics in medicine and biology.

Optimal combination of anti‐scatter grids and software correction for CBCT imaging

Jan-Jakob Sonke, Marcel van Herk, Uros Stankovic, 2017, Medical physics.

Technical Note: Long-term stability of Hounsfield unit calibration for cone-beam computed tomography.

J. Sonke, U. Stankovic, Lukas Schröder, 2020, Medical physics.

Evaluating the impact of cone-beam computed tomography scatter mitigation strategies on radiotherapy dose calculation accuracy

J. Sonke, P. Remeijer, U. Stankovic, 2019, Physics and imaging in radiation oncology.

Deterioration of Intended Target Volume Radiation Dose Due to Anatomical Changes in Patients with Head-and-Neck Cancer

J. Sonke, A. Al-Mamgani, S. V. van Kranen, 2021, Cancers.

Redistributed versus homogenous radiotherapy dose for head and neck cancer; a treatment planning study

J. Sonke, C. Rasch, J. Heukelom, 2017 .

Micro cone beam computed tomography for sensitive assessment of radiation-induced late lung toxicity in preclinical models.

J. Sonke, R. Coppes, M. Verheij, 2019, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Feasibility of Micro-Computed Tomography Imaging for Direct Assessment of Surgical Resection Margins During Breast-Conserving Surgery.

J. Sonke, M. van Seijen, C. Loo, 2019, The Journal of surgical research.

A Collaborative Analysis of Stereotactic Lung Radiotherapy Outcomes for Early-Stage Non–Small-Cell Lung Cancer Using Daily Online Cone-Beam Computed Tomography Image-Guided Radiotherapy

J. Sonke, D. Yan, L. Kestin, 2012, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

The increasing potential of nuclear medicine imaging for the evaluation and reduction of normal tissue toxicity from radiation treatments

J. Sonke, W. Vogel, J. B. Van de kamer, 2021, European Journal of Nuclear Medicine and Molecular Imaging.

Results of a multicentre dosimetry audit using a respiratory phantom within the EORTC LungTech trial.

J. Sonke, D. Eaton, M. Verheij, 2018, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Stereotactic Body Radiation Therapy in Octo- and Nonagenarians for the Treatment of Early-Stage Lung Cancer.

J. Sonke, A. Hope, M. Werner-wasik, 2017, International journal of radiation oncology, biology, physics.

The acute and late toxicity results of a randomized phase II dose-escalation trial in non-small cell lung cancer (PET-boost trial).

J. Sonke, W. V. van Elmpt, D. de Ruysscher, 2019, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Treatment adherence in concurrent chemoradiation in patients with locally advanced non-small cell lung carcinoma: results of daily intravenous prehydration.

J. Sonke, J. Belderbos, M. M. van den Heuvel, 2014, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Prognostic parameters for acute esophagus toxicity in intensity modulated radiotherapy and concurrent chemotherapy for locally advanced non-small cell lung cancer.

J. Sonke, J. Belderbos, M. M. van den Heuvel, 2013, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Tumor tracking in 4D CT images for adaptive radiotherapy

E. Gavves, J. Sonke, J. Teuwen, 2022, Medical Imaging.

Correlating dose variables with local tumor control in stereotactic body radiotherapy for early stage non-small cell lung cancer: A modelling study on 1500 individual treatments.

H. Eich, R. Sweeney, J. Sonke, 2020, International journal of radiation oncology, biology, physics.

Is There a Lower Limit of Pretreatment Pulmonary Function for Safe and Effective Stereotactic Body Radiotherapy for Early-Stage Non-small Cell Lung Cancer?

J. Sonke, D. Yan, L. Kestin, 2012, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

Substantial Dose-response Relationship with Clinical Outcome for Lung Stereotactic Body Radiotherapy (SBRT) Delivered via Online Image Guidance

J. Sonke, D. Yan, L. Kestin, 2010 .

The Prognostic Value of Baseline 18F-FDG PET/CT in Human Papillomavirus–Positive Versus Human Papillomavirus–Negative Patients With Oropharyngeal Cancer

J. Sonke, A. Al-Mamgani, E. van Werkhoven, 2019, Clinical nuclear medicine.

Organ Function Preservation Failure after (Chemo)Radiotherapy in Head and Neck Cancer: A Retrospective Cohort Analysis

J. Sonke, C. Rasch, A. Al-Mamgani, 2019, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.

Late follow‐up of the randomized radiation and concomitant high‐dose intra‐arterial or intravenous cisplatin (RADPLAT) trial for advanced head and neck cancer

I. Tan, J. Sonke, C. Rasch, 2016, Head & neck.

Motion-compensated FDG PET/CT for oesophageal cancer

J. Sonke, J. V. van Sandick, J. B. Van de kamer, 2020, Strahlentherapie und Onkologie.

215 Changes in patient setup and bladder volume during irradiation of bladder cancer patients

J. Sonke, P. Remeijer, M. Herk, 2005 .

Subgroup Survival Analysis in Stage I-II NSCLC Patients With a Central Tumor Partly Treated With Risk-Adapted SBRT.

J. Sonke, A. Hope, M. Werner-wasik, 2019, International journal of radiation oncology, biology, physics.

LIRE: Learned Invertible Reconstruction for Cone Beam CT

J. Sonke, J. Teuwen, N. Moriakov, 2022, 2205.07358.

Pareto frontier analysis of spatio-temporal total-variation based four-dimensional cone-beam CT

J. Sonke, Hua Zhang, 2019, Biomedical Physics & Engineering Express.

SPECT/CT-guided elective nodal irradiation for head and neck cancer: Estimation of clinical benefits using NTCP models.

J. Sonke, A. Al-Mamgani, W. Vogel, 2019, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Predictors and Patterns of Regional Recurrence Following Lung SBRT: A Report From the Elekta Lung Research Group

J. Sonke, A. Hope, M. Werner-wasik, 2017, Clinical lung cancer.

Feasibility of cone beam CT-guided library of plans strategy in pre-operative gastric cancer radiotherapy.

J. Sonke, A. Bel, M. Hulshof, 2020, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Magnetic Resonance-based Response Assessment and Dose Adaptation in Human Papilloma Virus Positive Tumors of the Oropharynx treated with Radiotherapy (MR-ADAPTOR): An R-IDEAL stage 2a-2b/Bayesian phase II trial

A. Garden, K. Brock, C. Fuller, 2018, Clinical and translational radiation oncology.

Intrafraction Motion in Stereotactic Body Radiation Therapy for Non-Small Cell Lung Cancer: Intensity Modulated Radiation Therapy Versus Volumetric Modulated Arc Therapy.

J. Sonke, J. Belderbos, M. Rossi, 2016, International journal of radiation oncology, biology, physics.

DIFFERENCES IN TARGET VOLUME SHAPE VARIATION IN RECTAL CANCER PATIENTS PRONE VS SUPINE OR GENDER

J. Sonke, C. Marijnen, J. Nijkamp, 2009 .

SBRT combined with concurrent chemoradiation in stage III NSCLC: Feasibility study of the phase I Hybrid trial.

J. Sonke, E. Damen, J. Belderbos, 2020, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Evaluation of plan quality in radiotherapy planning with an MR-linac

J. Sonke, B. van Triest, W. van den Wollenberg, 2019, Physics and imaging in radiation oncology.

The use of real-world evidence to audit normal tissue complication probability models for acute esophageal toxicity in non-small cell lung cancer patients.

J. Sonke, M. Verheij, J. Belderbos, 2020, Radiotherapy and Oncology.

Non-small cell lung cancer, locally advanced

P. Lambin, S. Kozlov, I. Petersen, 2012 .

Four-dimensional cone beam CT reconstruction and enhancement using a temporal nonlocal means method.

Steve B. Jiang, J. Sonke, X. Jia, 2012, Medical physics.

Artificial Intelligence for Image Registration in Radiation Oncology.

J. Sonke, J. Teuwen, Z. Gouw, 2022, Seminars in radiation oncology.

Adverse event development in clinical oncology trials.

J. Sonke, N. Aaronson, M. Verheij, 2016, The Lancet. Oncology.

Normal Tissue Complication Probability after hypofractionation increased due to the high dose per fraction or the high total Biological Equivalent Dose?

J. Sonke, J. Lebesque, J. Belderbos, 2010, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Benchmarking daily adaptation using fully automated radiotherapy treatment plan optimization for rectal cancer

J. Sonke, P. Remeijer, T. Janssen, 2022, Physics and Imaging in Radiation Oncology.

Estimation of the a / b ratio of non-small cell lung cancer treated with stereotactic body radiotherapy

H. Eich, R. Sweeney, J. Sonke, 2019 .

Estimation of the α/β ratio of non-small cell lung cancer treated with stereotactic body radiotherapy.

H. Eich, R. Sweeney, J. Sonke, 2019, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

A unified model for reconstruction and R 2 * mapping of accelerated 7T data using the quantitative recurrent inference machine

B. Forstmann, H. Vrenken, D. Poot, 2022, NeuroImage.

A unified model for reconstruction and R2* mapping of accelerated 7T data

B. Forstmann, D. Poot, P. Bazin, 2022, NeuroImage.

Journal Pre-proof A uniﬁed model for reconstruction and R ∗ 2 mapping of accelerated 7T data using the quantitative Recurrent Inference Machine

B. Forstmann, H. Vrenken, D. Poot, 2022 .

A predictive model for residual disease after (chemo) radiotherapy in oropharyngeal carcinoma: Combined radiological and clinical evaluation of tumor response

J. Sonke, B. Jasperse, A. Al-Mamgani, 2017, Clinical and translational radiation oncology.

Recurrent oropharyngeal cancer after organ preserving treatment: pattern of failure and survival

J. Sonke, B. Jasperse, A. Al-Mamgani, 2017, European Archives of Oto-Rhino-Laryngology.

Adaptive radiotherapy with an average anatomy model: evaluation and quantification of residual deformations in head and neck cancer patients.

M. V. van Herk, J. Sonke, C. Rasch, 2013, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Adaptive and innovative Radiation Treatment FOR improving Cancer treatment outcomE (ARTFORCE); a randomized controlled phase II trial for individualized treatment of head and neck cancer

Jan-Jakob Sonke, Frank Hoebers, Philippe Lambin, 2013, BMC Cancer.

Pre-hydration in cisplatin-based CCRT: Effects on tumour concentrations and treatment outcome.

J. Sonke, J. Belderbos, M. Rossi, 2019, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

First system for fully-automated multi-criterial treatment planning for a high-magnetic field MR-Linac applied to rectal cancer

J. Sonke, B. Heijmen, S. Breedveld, 2020, Acta oncologica.

PET motion compensation for radiation therapy using a CT-based mid-position motion model: methodology and clinical evaluation.

M. V. van Herk, J. Sonke, J. Belderbos, 2013, International journal of radiation oncology, biology, physics.

Mapping of sentinel lymph node drainage using SPECT/CT to tailor elective nodal irradiation in head and neck cancer patients (SUSPECT-2): a single-center prospective trial

J. Sonke, C. Marijnen, C. Marijnen, 2019, BMC Cancer.

MR-Linac Radiotherapy – The Beam Angle Selection Problem

J. Sonke, B. Heijmen, S. Breedveld, 2021, Frontiers in Oncology.

Improving predictive CTV segmentation on CT and CBCT for cervical cancer by diffeomorphic registration of a prior.

J. Sonke, P. Remeijer, S. van Beek, 2021, Medical Physics (Lancaster).

OC-0514 Unsupervised deep learning for fast and accurate CBCT to CT deformable image registration

J. Sonke, S. V. van Kranen, R. Rozendaal, 2019, Radiotherapy and Oncology.

P3-170: The necessity of a correct dose calculation algorithm for stereotactic lung irradiation

J. Sonke, J. Lebesque, E. Damen, 2007 .

Differential analysis of local and regional failure in locally advanced non-small cell lung cancer patients treated with concurrent chemoradiotherapy.

J. Sonke, J. Belderbos, M. M. van den Heuvel, 2016, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

WE‐E‐J‐6C‐05: Variability of Four Dimensional CT Patient Models

J. Sonke, J. Wolthaus, J. Lebesque, 2005 .

Safety and efficacy of reduced dose and margins to involved lymph node metastases in locally advanced NSCLC patients.

J. Sonke, J. Belderbos, M. Kwint, 2020, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Adaptive margins for online adaptive radiotherapy

J. Sonke, P. Remeijer, U. A. van der Heide, 2022, Physics in medicine and biology.

Alpha/beta ratio for normal lung tissue as estimated from lung cancer patients treated with stereotactic body and conventionally fractionated radiation therapy.

J. Sonke, J. Lebesque, E. Damen, 2014, International journal of radiation oncology, biology, physics.

Local dose-effect relations for lung perfusion post stereotactic body radiotherapy.

Jan-Jakob Sonke, Joos V Lebesque, Alize E H Scheenstra, 2013, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Relating Acute Esophageal Toxicity to Radiation Therapy Dose Using 18FDG-PET in Concurrent Chemoradiation Therapy for Locally Advanced Non-small Cell Lung Cancer

J. Sonke, J. Belderbos, M. Rossi, 2012 .

Clinical introduction of image lag correction for a cone beam CT system.

Jan-Jakob Sonke, Marcel van Herk, Uros Stankovic, 2016, Medical physics.

PO-0892: Introduction of image lag correction on clinical cone-beam CT systems

J. Sonke, M. Herk, L. Ploeger, 2014 .

Tumor Trailing for Liver SBRT on the MR-Linac.

Jan-Jakob Sonke, Martin Fast, J. Sonke, 2019, International journal of radiation oncology, biology, physics.

Modeling the Cellular Response of Lung Cancer to Radiation Therapy for a Broad Range of Fractionation Schedules

Jan-Jakob Sonke, Joseph O Deasy, Jeffrey D Bradley, 2017, Clinical Cancer Research.

Multi-Channel Wave Field Analysis as a Specification Tool for Wave Field Synthesis

Jan-Jakob Sonke, Diemer de Vries, Jan Baan, 1997 .

Accuracy evaluation of a 3-dimensional surface imaging system for guidance in deep-inspiration breath-hold radiation therapy.

Jan-Jakob Sonke, Tanja Alderliesten, Anja Betgen, 2013, International journal of radiation oncology, biology, physics.

Generation of Diffuse Reverberation by Plane Wave Synthesis

Jan-Jakob Sonke, Diemer de Vries, J. Sonke, 1997 .

Modeling local control after hypofractionated stereotactic body radiation therapy for stage I non-small cell lung cancer: a report from the elekta collaborative lung research group.

Jan-Jakob Sonke, Ying Xiao, Maria Werner-Wasik, 2012, International journal of radiation oncology, biology, physics.

Substantial Dose-response Relationship with Clinical Outcome for Lung Stereotactic Body Radiotherapy (SBRT) Delivered via Online Image Guidance

J. Sonke, D. Yan, L. Kestin, 2010 .

Dynamic collimator angle adjustments during volumetric modulated arc therapy to account for prostate rotations.

Jan-Jakob Sonke, Marcel van Herk, M. V. van Herk, 2015, International journal of radiation oncology, biology, physics.

Validating a Predictive Atlas of Tumor Shrinkage for Adaptive Radiotherapy of Locally Advanced Lung Cancer.

Joseph O. Deasy, Jan-Jakob Sonke, Ellen Yorke, 2018, International journal of radiation oncology, biology, physics.

Challenges of radiotherapy: report on the 4D treatment planning workshop 2013.

Jan-Jakob Sonke, Christopher Kurz, Shinichi Shimizu, 2014, Physica medica (Testo stampato).

Relating acute esophagitis to radiotherapy dose using FDG-PET in concurrent chemo-radiotherapy for locally advanced non-small cell lung cancer.

Jan-Jakob Sonke, Jasper Nijkamp, Jose Belderbos, 2013, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Magnetic resonance-guided adaptive radiotherapy: a solution to the future.

Jan-Jakob Sonke, J. Sonke, P. Kupelian, 2014, Seminars in radiation oncology.

Array Technology for Measurement and Analysis of Sound Fields in Enclosures

Jan-Jakob Sonke, A. J. Berkhout, Diemer de Vries, 1996 .

Tumour delineation in oesophageal cancer - A prospective study of delineation in PET and CT with and without endoscopically placed clip markers.

Jan-Jakob Sonke, Matthias Guckenberger, Bülent Polat, 2015, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

New Developments in Electroacoustic Reverberation Technology

Jan-Jakob Sonke, Diemer de Vries, Antwan J. Reijnen, 1995 .

Validation of High-Risk Computed Tomography Features for Detection of Local Recurrence After Stereotactic Body Radiation Therapy for Early-Stage Non-Small Cell Lung Cancer.

Jan-Jakob Sonke, Maria Werner-Wasik, Matthias Guckenberger, 2016, International journal of radiation oncology, biology, physics.

Time Interval Between Staging FDG Positron Emission Tomography (PET) and Initiation of Stereotactic Lung Radiotherapy (SBRT) Impacts the Risk of Recurrence and Metastasis in Non-small Cell Lung Cancer (NSCLC)

J. Sonke, D. Yan, L. Kestin, 2010 .

Local interfractional setup reproducibility for 2 individual head and neck supports in head and neck cancer patients.

J. Sonke, P. Remeijer, C. Rasch, 2014, Practical radiation oncology.

A margin recipe for the management of intra-fraction target motion in radiotherapy

J. Sonke, P. Remeijer, U. A. van der Heide, 2022, Physics and imaging in radiation oncology.

A multinational pooled analysis of 434 cases of stage I non-small cell lung cancer (NSCLC) treated with volumetrically image-guided (VIGRT) stereotactic lung radiotherapy (SBRT): Results from the Elekta Collaborative Lung Research Group.

J. Sonke, D. Yan, L. Kestin, 2010 .

213 A simple method to correctly account for rotational errors in radiotherapy

Anja Betgen, Peter Remeijer, Joos V. Lebesque, 2005 .

Image-guided radiotherapy for lung cancer: Respiration-correlated (cone-beam) CT to verify tumor position and motion characteristics during treatment delivery

Marcel van Herk, Peter Remeijer, José Belderbos, 2004 .

Detailed dosimetric evaluation of inter-fraction and respiratory motion in lung stereotactic body radiation therapy based on daily 4D cone beam CT images

J. Sonke, J. Belderbos, M. Rossi, 2022, Physics in medicine and biology.

State-of-the-art lung cancer radiation therapy

J. Sonke, J. Belderbos, 2009, Expert review of anticancer therapy.

Dynamic Transformer for Few-shot Instance Segmentation

Subhransu Maji, E. Gavves, J. Sonke, 2022, ACM Multimedia.

Few-shot Semantic Segmentation with Support-induced Graph Convolutional Network

E. Gavves, J. Sonke, Jie Liu, 2023, ArXiv.

Muscarinic inhibition of salivary glands with glycopyrronium bromide does not reduce the uptake of PSMA-ligands or radioiodine

J. Sonke, A. Al-Mamgani, W. Vogel, 2021, EJNMMI Research.

Comparisons of normal tissue complication probability models derived from planned and delivered dose for head and neck cancer patients.

J. Sonke, A. Al-Mamgani, S. V. van Kranen, 2021, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

The effect of eating on the uptake of PSMA ligands in the salivary glands

J. Sonke, W. Vogel, J. B. Van de kamer, 2021, EJNMMI Research.

The dosimetric and clinical advantages of the GTV-CTV-PTV margins reduction by 6mm in head and neck squamous cell carcinoma: significant acute and late toxicity reduction.

J. Sonke, C. Marijnen, A. Al-Mamgani, 2022, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Severe late esophagus toxicity in NSCLC patients treated with IMRT and concurrent chemotherapy.

J. Sonke, J. Belderbos, M. M. van den Heuvel, 2013, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Validation of high-risk CT features for detection of local recurrence after stereotactic body radiotherapy for early stage non-small cell lung cancer

J. Sonke, A. Hope, I. Grills, 2022 .

Quantification of esophageal tumor motion and investigation of different image-guided correction strategies.

J. Sonke, P. Remeijer, B. Stam, 2019, Practical radiation oncology.

Registration accuracy and image quality of time averaged mid-position CT scans for liver SBRT.

M. V. van Herk, J. Sonke, E. Jansen, 2013, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Lack of a dose-effect relationship for pulmonary function changes after stereotactic body radiation therapy for early-stage non-small cell lung cancer.

J. Sonke, D. Yan, L. Kestin, 2012, International journal of radiation oncology, biology, physics.

Prediction of Early Death in Patients with Early‐Stage NSCLC—Can We Select Patients without a Potential Benefit of SBRT as a Curative Treatment Approach?

J. Sonke, A. Hope, I. Grills, 2016, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

Radioactive seed localization in breast cancer treatment

J. Sonke, T. Alderliesten, C. Loo, 2016, The British journal of surgery.

18F-FDG-PET guided vs whole tumour radiotherapy dose escalation in patients with locally advanced non-small cell lung cancer (PET-Boost): results from a randomised clinical trial.

J. Sonke, W. V. van Elmpt, K. Sikorska, 2023, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Heart dose associated with overall survival in locally advanced NSCLC patients treated with hypofractionated chemoradiotherapy.

J. Sonke, E. Damen, J. Belderbos, 2017, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

The effect of age in breast conserving therapy: a retrospective analysis on pathology and clinical outcome data.

H. Bartelink, J. Sonke, K. Gilhuijs, 2015, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Local and regional treatment response by 18FDG-PET-CT-scans 4 weeks after concurrent hypofractionated chemoradiotherapy in locally advanced NSCLC.

J. Sonke, J. Belderbos, E. van Werkhoven, 2019, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Delivered dose-effect analysis of radiation induced rib fractures after thoracic SBRT.

J. Sonke, J. Belderbos, B. Stam, 2021, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Dose to heart substructures is associated with non-cancer death after SBRT in stage I-II NSCLC patients.

J. Sonke, A. Hope, I. Grills, 2017, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

In response to Park, et al.

J. Sonke, J. Belderbos, M. Kwint, 2020, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

HEART DOSE ASSOC IATED WITH OVERALL SURVIVAL I N LOCALLY ADVANCED NSCLC PAT I ENTS TR EATED WITH HYPOFRACTIONATED CH EMORAD IOTH ERAPY

J. Sonke, E. Damen, J. Belderbos, 2019 .

A secondary analysis of FDG spatio-temporal consistency in the randomized phase II PET-boost trial in stage II-III NSCLC.

J. Sonke, W. V. van Elmpt, D. de Ruysscher, 2018, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

The PET-boost randomised phase II dose-escalation trial in non-small cell lung cancer.

Jan-Jakob Sonke, Wouter van Elmpt, José Belderbos, 2012, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Reconstruction of a time-averaged midposition CT scan for radiotherapy planning of lung cancer patients using deformable registrationa).

M van Herk, M. V. van Herk, J. Sonke, 2008, Medical physics.

Quantifying the sensitivity of target dose on intra-fraction displacement in intra-cranial stereotactic radiosurgery

J. Sonke, M. Ruschin, A. Sahgal, 2021, Practical Radiation Oncology.

Single-center prospective trial investigating the feasibility of serial FDG-PET guided adaptive radiotherapy for head and neck cancer.

J. Sonke, A. Al-Mamgani, W. Vogel, 2020, International journal of radiation oncology, biology, physics.

Fractures of thoracic vertebrae in patients with locally advanced non-small cell lung carcinoma treated with intensity modulated radiotherapy.

J. Sonke, J. Belderbos, M. M. van den Heuvel, 2016, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Clinical results of image-guided deep inspiration breath hold breast irradiation.

Jan-Jakob Sonke, Anja Betgen, Peter Remeijer, 2010, International journal of radiation oncology, biology, physics.

Mapping of sentinel lymph node drainage using SPECT/CT to tailor elective nodal irradiation in head and neck cancer patients (SUSPECT-2): a single-center prospective trial

J. Sonke, C. Marijnen, A. Al-Mamgani, 2019, BMC Cancer.

Image quality of dual-energy cone-beam CT with total nuclear variation regularization

S. Rit, J. Sonke, Lukas Schröder, 2022, Biomedical physics & engineering express.

Method comparison of automated matching software-assisted cone-beam CT and stereoscopic kilovoltage x-ray positional verification image-guided radiation therapy for head and neck cancer: a prospective analysis

Jan-Jakob Sonke, Niko Papanikolaou, Clifton D Fuller, 2009, Physics in medicine and biology.

Quantifying intrafractional gastric motion using auto-segmentation on MRI: Deformation and respiratory-induced displacement compared.

J. Sonke, A. Bel, T. Driever, 2022, Journal of applied clinical medical physics.

A Self-Sorting Coronal 4D-MRI Method for Daily Image Guidance of Liver Lesions on an MR-LINAC.

Jan-Jakob Sonke, Martin Fast, J. Sonke, 2018, International journal of radiation oncology, biology, physics.

Analysis of GTV reduction during radiotherapy for oropharyngeal cancer: Implications for adaptive radiotherapy.

Olga Hamming-Vrieze, J. Sonke, M. Verheij, 2017, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Microscopic disease extensions as a risk factor for loco-regional recurrence of NSCLC after SBRT.

J. Sonke, J. Stroom, J. Belderbos, 2013, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Target delineation variability and corresponding margins of peripheral early stage NSCLC treated with stereotactic body radiotherapy.

M. V. van Herk, J. Sonke, A. Hope, 2015, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

PART ONE OPTIMIZATION OF SBRT IN EARLY STAGE NSCLC

J. Sonke, A. Hope, M. Herk, 2022 .

Baseline peripheral blood leukocytosis: Biological marker predicts outcome in oropharyngeal cancer, regardless of HPV-status.

J. Sonke, A. Al-Mamgani, A. Navran, 2018, Oral oncology.

Improved image quality of cone beam CT scans for radiotherapy image guidance using fiber-interspaced antiscatter grid.

Jan-Jakob Sonke, Marcel van Herk, Uros Stankovic, 2014, Medical physics.

4D CT amplitude binning for the generation of a time-averaged 3D mid-position CT scan

Jan-Jakob Sonke, Marcel van Herk, Jeroen B van de Kamer, 2014, Physics in medicine and biology.

Mid-ventilation based PTV margins in Stereotactic Body Radiotherapy (SBRT): a clinical evaluation.

J. Sonke, J. Belderbos, M. Rossi, 2014, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Interfraction and intrafraction changes in amplitude of breathing motion in stereotactic liver radiotherapy.

Andrea Bezjak, Kristy K. Brock, Douglas J. Moseley, 2010, International journal of radiation oncology, biology, physics.

Beyond the margin recipe: the probability of correct target dosage and tumor control in the presence of a dose limiting structure

Jan-Jakob Sonke, Joseph O Deasy, Marnix G Witte, 2017, Physics in medicine and biology.

Image-guided radiotherapy for breast cancer patients: surgical clips as surrogate for breast excision cavity.

J. Sonke, P. Remeijer, C. Rasch, 2011, International journal of radiation oncology, biology, physics.

UvA-DARE ( Digital Academic Repository ) Radiotherapy for lung cancer

J. Sonke, M. Herk, A. Betgen, 2009 .

Strategy for online correction of rotational organ motion for intensity-modulated radiotherapy of prostate cancer.

Jan-Jakob Sonke, Joos V Lebesque, Marcel van Herk, 2007, International journal of radiation oncology, biology, physics.

Kilo-voltage cone beam CT setup measurements for lung cancer patients; first clinical results and comparison with electronic portal-imaging device 7

J. Sonke, J. Lebesque, M. Herk, 2007 .

Repeat CT assessed CTV variation and PTV margins for short- and long-course pre-operative RT of rectal cancer.

M. V. van Herk, J. Sonke, C. Marijnen, 2012, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Target volume shape variation during irradiation of rectal cancer patients in supine position: comparison with prone position.

J. Sonke, C. Marijnen, J. Nijkamp, 2009, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Target volume shape variation during hypo-fractionated preoperative irradiation of rectal cancer patients.

J. Sonke, P. Remeijer, C. Marijnen, 2009, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Constrained Empirical Risk Minimization: Theory and Practice

J. Sonke, J. Teuwen, Ray Sheombarsing, 2023, ArXiv.

The dynamics and prognostic value of FDG PET-metrics in weekly monitoring of (chemo)radiotherapy for NSCLC.

J. Sonke, S. V. van Kranen, J. Knegjens, 2021, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Respiratory Motion Correction in Cone-Beam CT for Image-Guided Radiotherapy

Jan-Jakob Sonke, David Sarrut, Simon Rit, 2013 .

Dose-effect analysis of radiation induced rib fractures after thoracic SBRT.

Jan-Jakob Sonke, Barbara Stam, Erik van der Bijl, 2017, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Evolutionary Machine Learning for Multi-Objective Class Solutions in Medical Deformable Image Registration

Peter A. N. Bosman, Tanja Alderliesten, Marcel van Herk, 2019, Algorithms.

Clinical evaluation of respiration-induced attenuation uncertainties in pulmonary 3D PET/CT

M. V. van Herk, J. Sonke, J. Belderbos, 2015, EJNMMI Physics.

Motion compensation for 4 D PET / CT Kruis

J. Sonke, A. Houweling, J. V. D. Kamer, 2014 .

Modeling radiation pneumonitis of pulmonary stereotactic body radiotherapy: The impact of a local dose-effect relationship for lung perfusion loss.

J. Sonke, J. Lebesque, A. Hope, 2019, Radiotherapy and Oncology.

Radiation pneumonitis after hypofractionated radiotherapy: evaluation of the LQ(L) model and different dose parameters.

J. Sonke, M. Hauptmann, R. Onimaru, 2010, International journal of radiation oncology, biology, physics.

Radiation pneumonitis for patients treated for malignant pulmonary lesions with stereotactic body radiation therapy

J. Sonke, M. Hauptmann, R. Onimaru, 2009 .

Assessment of set-up variability during deep inspiration breath hold radiotherapy for breast cancer patients by 3D-surface imaging.

Jan-Jakob Sonke, Tanja Alderliesten, Anja Betgen, 2013, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Application of 3D surface imaging in breast cancer radiotherapy

Jan-Jakob Sonke, Tanja Alderliesten, Anja Betgen, 2012, Medical Imaging.

3D surface imaging for monitoring intrafraction motion in frameless stereotactic body radiotherapy of lung cancer.

J. Sonke, P. Remeijer, T. Alderliesten, 2012, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Dose accumulation for MR-guided adaptive radiotherapy: From practical considerations to state-of-the-art clinical implementation

Jeffrey E Snyder, K. Brock, Jinzhong Yang, 2023, Frontiers in Oncology.

Diversifying Multi-Objective Gradient Techniques and their Role in Hybrid Multi-Objective Evolutionary Algorithms for Deformable Medical Image Registration

Peter A. N. Bosman, Jan-Jakob Sonke, Tanja Alderliesten, 2015, GECCO.

Image-guided radiotherapy for left-sided breast cancer patients: geometrical uncertainty of the heart.

J. Sonke, G. Borst, R. Topolnjak, 2012, International journal of radiation oncology, biology, physics.

Differences between planned and delivered dose for head and neck cancer, and their consequences for normal tissue complication probability and treatment adaptation.

C. Fuller, M. Aristophanous, Jinzhong Yang, 2020, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Accurate estimation of daily delivered radiotherapy dose with an external treatment planning system

J. Sonke, S. Svensson, S. V. van Kranen, 2020, Physics and imaging in radiation oncology.

Head and Neck Margin Reduction With Adaptive Radiation Therapy: Robustness of Treatment Plans Against Anatomy Changes.

M. V. van Herk, J. Sonke, E. Damen, 2016, International journal of radiation oncology, biology, physics.

Adaptive and innovative Radiation Treatment FOR improving Cancer treatment outcomE (ARTFORCE); a randomized controlled phase II trial for individualized treatment of head and neck cancer

P. Lambin, H. Bartelink, F. Hoebers, 2013, BMC Cancer.

PO-0888: Response monitoring by 18FDG-PET in locally advanced NSCLC treated with concurrent chemoradiotherapy

J. Sonke, J. Belderbos, W. Vogel, 2017 .

The impact of margin reduction on outcome and toxicity in head and neck cancer patients treated with image-guided volumetric modulated arc therapy (VMAT).

Jan-Jakob Sonke, Peter Remeijer, Tomas Janssen, 2019, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

A first step toward uncovering the truth about weight tuning in deformable image registration

Peter A. N. Bosman, Jan-Jakob Sonke, Tanja Alderliesten, 2016, SPIE Medical Imaging.

On the usefulness of gradient information in multi-objective deformable image registration using a B-spline-based dual-dynamic transformation model: comparison of three optimization algorithms

Peter A. N. Bosman, Jan-Jakob Sonke, Tanja Alderliesten, 2015, Medical Imaging.

A multi-resolution strategy for a multi-objective deformable image registration framework that accommodates large anatomical differences

Peter A. N. Bosman, Jan-Jakob Sonke, Tanja Alderliesten, 2014, Medical Imaging.

Deformable image registration by multi-objective optimization using a dual-dynamic transformation model to account for large anatomical differences

Peter A. N. Bosman, Jan-Jakob Sonke, Tanja Alderliesten, 2013, Medical Imaging.

Multi-objective optimization for deformable image registration: proof of concept

Peter A. N. Bosman, Jan-Jakob Sonke, Tanja Alderliesten, 2012, Medical Imaging.

Non-small cell lung cancer stage migration as a function of wait times from diagnostic imaging: A pooled analysis from five international centres.

J. Sonke, A. Sun, I. Grills, 2021, Lung cancer.

A simulation framework for modeling tumor control probability in breast conserving therapy.

H. Bartelink, J. Sonke, K. Gilhuijs, 2014, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Impact of negative margin width on local recurrence in breast conserving therapy.

H. Bartelink, J. Sonke, K. Gilhuijs, 2012, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Acute esophagus toxicity in lung cancer patients after intensity modulated radiation therapy and concurrent chemotherapy.

Jan-Jakob Sonke, Marcel van Herk, Jasper Nijkamp, 2012, International journal of radiation oncology, biology, physics.

In response to: Dyspnea evaluation after high-dose radiotherapy in patients with NSCLC De Ruysscher et al.

J. Sonke, J. Lebesque, J. Belderbos, 2009 .

Reproducibility of the MRI-defined spinal cord position in stereotactic radiotherapy for spinal oligometastases.

J. Sonke, P. Remeijer, E. Damen, 2014, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Dosimetric benefit of a library of plans versus single-plan strategy for pre-operative gastric cancer radiotherapy.

J. Sonke, A. Bel, M. Hulshof, 2023, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Margin and PTV volume reduction using a population based library of plans strategy for rectal cancer radiotherapy

Peter Remeijer, Suzanne van Beek, J. Sonke, 2018, Medical physics.

Differential motion between mediastinal lymph nodes and primary tumor in radically irradiated lung cancer patients.

Jan-Jakob Sonke, J. Sonke, J. Burgers, 2014, International journal of radiation oncology, biology, physics.

PlanJury: probabilistic plan evaluation revisited

M. V. van Herk, J. Sonke, M. Witte, 2014 .

Combined recipe for clinical target volume and planning target volume margins.

J. Sonke, K. Gilhuijs, J. Stroom, 2014, International journal of radiation oncology, biology, physics.

Hybrid registration of prostate and seminal vesicles for image guided radiation therapy.

M. V. van Herk, J. Sonke, F. Pos, 2013, International journal of radiation oncology, biology, physics.

Mediastinal lymph node position variability in non-small cell lung cancer patients treated with radical irradiation.

J. Sonke, J. Burgers, J. Belderbos, 2012, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Influence of the number of elongated fiducial markers on the localization accuracy of the prostate

Jan-Jakob Sonke, Marcel van Herk, M. V. van Herk, 2012, Physics in medicine and biology.

Adaptive radiotherapy for long course neo-adjuvant treatment of rectal cancer.

Jan-Jakob Sonke, Marcel van Herk, Jasper Nijkamp, 2012, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Residual seminal vesicle displacement in marker-based image-guided radiotherapy for prostate cancer and the impact on margin design.

M. V. van Herk, J. Sonke, C. Catton, 2011, International journal of radiation oncology, biology, physics.

Correction strategies to manage deformations in head-and-neck radiotherapy.

Jan-Jakob Sonke, Angelo Mencarelli, Marcel van Herk, 2010, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Strategies for online organ motion correction for intensity-modulated radiotherapy of prostate cancer: prostate, rectum, and bladder dose effects.

Jan-Jakob Sonke, Joos V Lebesque, Marcel van Herk, 2009, International journal of radiation oncology, biology, physics.

Evaluation of tumor shape variability in head-and-neck cancer patients over the course of radiation therapy using implanted gold markers.

Jan-Jakob Sonke, Marcel van Herk, Olga Hamming-Vrieze, 2012, International journal of radiation oncology, biology, physics.

The impact of breathing amplitude on dose homogeneity in intensity modulated proton therapy

J. Sonke, M. Herk, M. Witte, 2017 .

Anatomy changes in radiotherapy detected using portal imaging.

M. V. van Herk, J. Sonke, L. McDermott, 2006, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Quantifying interfraction and intrafraction tumor motion in lung stereotactic body radiotherapy using respiration-correlated cone beam computed tomography.

Jan-Jakob Sonke, David A Jaffray, Andrea Bezjak, 2009, International journal of radiation oncology, biology, physics.

3D EPID-based in vivo dosimetry for IMRT and VMAT

J. Sonke, B. Mijnheer, M. Herk, 2013 .

TU‐C‐T‐6E‐06: First Clinical Experience with Pre‐Treatment and in Vivo IMRT Verification Using EPID Dosimetry

M. van Herk, J. J. Sonke, B. J. Mijnheer, 2005 .

Inter- and intrafraction variability in liver position in non-breath-hold stereotactic body radiotherapy.

Jan-Jakob Sonke, Kristy K. Brock, Douglas J. Moseley, 2009, International journal of radiation oncology, biology, physics.

Effects of respiration-induced density variations on dose distributions in radiotherapy of lung cancer.

Jan-Jakob Sonke, Marcel van Herk, Vanessa Mexner, 2009, International journal of radiation oncology, biology, physics.

Predictive Models to Determine Clinically Relevant Deviations in Delivered Dose for Head and Neck Cancer.

K. Brock, C. Fuller, J. Sonke, 2019, Practical radiation oncology.

First clinical experience with a multiple region of interest registration and correction method in radiotherapy of head-and-neck cancer patients.

Jan-Jakob Sonke, Angelo Mencarelli, Marcel van Herk, 2010, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Feasibility of MRI-based reference images for image-guided radiotherapy of the pelvis with either cone-beam computed tomography or planar localization images

J. Sonke, J. Keyriläinen, M. Tenhunen, 2015, Acta oncologica.

Radiation-Induced Lung Density Changes on CT Scan for NSCLC: No Impact of Dose-Escalation Level or Volume.

J. Sonke, D. de Ruysscher, J. Belderbos, 2018, International journal of radiation oncology, biology, physics.

Deformable image registration for adaptive radiation therapy of head and neck cancer: accuracy and precision in the presence of tumor changes.

Jan-Jakob Sonke, Angelo Mencarelli, Marcel van Herk, 2014, International journal of radiation oncology, biology, physics.

The influence of a dietary protocol on cone beam CT-guided radiotherapy for prostate cancer patients.

M. V. van Herk, J. Sonke, J. Lebesque, 2008, International journal of radiation oncology, biology, physics.

Reducing 4DCBCT imaging time and dose: the first implementation of variable gantry speed 4DCBCT on a linear accelerator

Jan-Jakob Sonke, Paul J Keall, Ricky T O'Brien, 2017, Physics in medicine and biology.

Lungtech, a phase II EORTC trial of SBRT for centrally located lung tumours – a clinical physics perspective

R. Boellaard, J. Sonke, M. Verheij, 2016, Radiation oncology.

The feasibility of manual parameter tuning for deformable breast MR image registration from a multi-objective optimization perspective

Jan-Jakob Sonke, Tanja Alderliesten, Marcel van Herk, 2017, Physics in medicine and biology.

Impact of setup and range uncertainties on TCP and NTCP following VMAT or IMPT of oropharyngeal cancer patients

H. Kooy, J. Sonke, D. Craft, 2019, Physics in medicine and biology.

PO-0880: Validity of dose shift-deformation invariance assumption for dose accumulation in head & neck radiotherapy

J. Sonke, M. Herk, S. V. Beek, 2014 .

Effects of anatomical changes on pencil beam scanning proton plans in locally advanced NSCLC patients.

Jan-Jakob Sonke, Marnix G Witte, Marcel van Herk, 2016, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Validation of a 4D-MRI guided liver stereotactic body radiation therapy strategy for implementation on the MR-linac

J. Sonke, M. Fast, C. Schneider, 2021, Physics in medicine and biology.

Multi-institutional dosimetric and geometric commissioning of image-guided small animal irradiators.

J. Kaas, A. Gasparini, J. Sonke, 2014, Medical physics.

First clinical experience with cone-beam CT guided radiation therapy; evaluation of dose and geometric accuracy

David Jaffray, Anja Betgen, Peter Remeijer, 2004 .

Volume changes in soft tissue sarcomas during preoperative radiotherapy of extremities evaluated using cone-beam CT

J. Sonke, R. Haas, A. Betgen, 2013, Journal of Radiation Oncology.

Recurrent Variational Network: A Deep Learning Inverse Problem Solver applied to the task of Accelerated MRI Reconstruction

J. Sonke, J. Teuwen, C. S'anchez, 2021, 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

Utilization of 4D-CT and contrast enhanced expiration breath-hold CT for 3D treatment planning of lung tumors

S. Rit, J. Sonke, M. Herk, 2010 .

A 1.5 T transverse magnetic field in radiotherapy of rectal cancer: Impact on the dose distribution.

Jan-Jakob Sonke, Jasper Nijkamp, J. Sonke, 2015, Medical physics.

Neural Modulation Fields for Conditional Cone Beam Neural Tomography

David M. Knigge, E. Gavves, J. Sonke, 2023, ArXiv.

Directional Interpolation for Motion Weighted 4D Cone-Beam CT Reconstruction

Jan-Jakob Sonke, Hua Zhang, J. Sonke, 2012, MICCAI.

An MRI-based mid-ventilation approach for radiotherapy of the liver.

Jan-Jakob Sonke, Gerald Schubert, Uulke A van der Heide, 2016, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

On Retrospective k-space Subsampling schemes For Deep MRI Reconstruction

J. Sonke, J. Teuwen, George Yiasemis, 2023, Magnetic resonance imaging.

Deep MRI reconstruction with radial subsampling pdf

Jan-Jakob Sonke, Jonas Teuwen, Clara I. S'anchez, 2021, Medical Imaging.

Modelling Long Range Dependencies in N-D: From Task-Specific to a General Purpose CNN

Jakub M. Tomczak, David W. Romero, David M. Knigge, 2023, ICLR.

Endoscopically placed fiducial markers for image-guided radiotherapy in preoperative gastric cancer: Technical feasibility and potential benefit

J. Sonke, A. Bel, J. V. van Hooft, 2023, Endoscopy International Open.

Gastric deformation models for adaptive radiotherapy: Personalized vs Population-based strategy.

J. Sonke, A. Bel, M. Hulshof, 2021, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

UvA-DARE ( Digital Academic Repository ) Radiotherapy for lung cancer

Academisch Proefschrift, J. Sonke, P. Remeijer, 2017 .

Deformation trajectory prediction using a neural network trained on finite element data—application to library of CTVs creation for cervical cancer

J. Sonke, P. Remeijer, E. Schaake, 2021, Physics in medicine and biology.

Lungtech, a phase II EORTC trial of SBRT for centrally located lung tumours – a clinical physics perspective

Jan-Jakob Sonke, Matthias Guckenberger, Ronald Boellaard, 2016, Radiation Oncology.

135 Multiple training interventions significantly improves PET/CT based lung cancer radiotherapy target volume delineation following an IAEA based delineation protocol

J. Sonke, D. Thorwarth, G. Hanna, 2016 .

Exploring breathing pattern irregularity with projection-based method.

Jan-Jakob Sonke, Jeffrey A Fessler, Dan Ruan, 2006, Medical physics.

Quality assurance of four-dimensional computed tomography in a multicentre trial of stereotactic body radiotherapy of centrally located lung tumours

J. Sonke, M. Verheij, U. Nestle, 2018, Physics and imaging in radiation oncology.

UvA-DARE ( Digital Academic Repository ) ( Un-) certainties in radiotherapy of rectal cancer

J. Sonke, P. Remeijer, C. Marijnen, 2012 .

Few-shot Semantic Segmentation with Support-induced Graph Convolutional Network

E. Gavves, J. Sonke, Jie Liu, 2023, BMVC.

Prostate-specific membrane antigen positron emission tomography/computed tomography as a potential tool to assess and guide salivary gland irradiation

J. Sonke, A. Al-Mamgani, W. Vogel, 2019, Physics and imaging in radiation oncology.

Real-time wireless tumor tracking during breast conserving surgery

Jan-Jakob Sonke, Roeland Eppenga, Koert Kuhlmann, 2018, International Journal of Computer Assisted Radiology and Surgery.

UvA-DARE ( Digital Academic Repository ) ( Un-) certainties in radiotherapy of rectal cancer

J. Sonke, P. Remeijer, C. V. Vliet-Vroegindeweij, 2012 .

An Off-Line 4D Cone Beam CT Based Correction Protocol for Lung Tumor Motion

J. Sonke, J. Lebesque, M. Herk, 2005 .

Reconstructing unseen modalities and pathology with an efficient Recurrent Inference Machine

S. Dumoulin, J. Sonke, H. Hulst, 2020, 2012.07819.

LDeform: Longitudinal Deformation Analysis for Adaptive Radiotherapy of Lung Cancer.

Joseph O. Deasy, Pengpeng Zhang, Allen Tannenbaum, 2019, Medical physics.

In aqua vivo EPID dosimetry.

Jan-Jakob Sonke, Marcel van Herk, Anton Mans, 2011, Medical physics.

Supine Breast MRI Using Respiratory Triggering.

J. Sonke, T. Alderliesten, C. Loo, 2017, Academic radiology.

Radiation pneumonitis after hypofractionated radiotherapy: evaluation of the LQ(L) model and different dose parameters.

J. Sonke, M. Hauptmann, R. Onimaru, 2010, International journal of radiation oncology, biology, physics.

How to Train Neural Field Representations: A Comprehensive Study and Benchmark

David M. Knigge, E. Gavves, J. Sonke, 2023, ArXiv.

End-to-end memory-efficient reconstruction for cone beam CT.

J. Sonke, J. Teuwen, N. Moriakov, 2022, Medical physics.

Learned SIRT for Cone Beam Computed Tomography Reconstruction.

Jan-Jakob Sonke, Nikita Moriakov, Jonas Teuwen, 2019, 1908.10715.

Acute esophagus toxicity in lung cancer patients after intensity modulated radiation therapy and concurrent chemotherapy.

M. V. van Herk, J. Sonke, J. Belderbos, 2012, International journal of radiation oncology, biology, physics.

Focal spot motion of linear accelerators and its effect on portal image analysis.

Jan-Jakob Sonke, Marcel van Herk, M. V. van Herk, 2003, Medical physics.

Dose-response and ghosting effects of an amorphous silicon electronic portal imaging device.

J J Sonke, B J Mijnheer, J. Sonke, 2003, Medical physics.

Motion compensated digital tomosynthesis.

Jan-Jakob Sonke, Marcel van Herk, Anneke van der Reijden, 2013, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Required target margins for image-guided lung SBRT: Assessment of target position intrafraction and correction residuals.

J. Sonke, D. Yan, L. Kestin, 2013, Practical radiation oncology.

Dynamic Prototype Adaptation with Distillation for Few-shot Point Cloud Segmentation

E. Gavves, J. Sonke, Yunlu Chen, 2024, 2401.16051.

PC-Reg: A pyramidal prediction-correction approach for large deformation image registration

E. Gavves, J. Sonke, Wenzhe Yin, 2023, Medical Image Anal..

Catching errors with in vivo EPID dosimetry.

J. Sonke, L. McDermott, M. Wendling, 2010, Medical physics.

Variable Acoustics by Wave Field Synthesis

J. J. Sonke, J. Sonke, 2000 .

UvA-DARE ( Digital Academic Repository ) Radiotherapy for lung cancer

J. Sonke, G. Borst, Josien A de Bois, 2017 .

Space-Time Continuous PDE Forecasting using Equivariant Neural Fields

David M. Knigge, E. Gavves, J. Sonke, 2024, ArXiv.

The first-in-human implementation of adaptive 4D cone beam CT for lung cancer radiotherapy: 4DCBCT in less time with less dose.

P. Keall, J. Sonke, S. Vinod, 2021, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Heart dose associated with overall survival in locally advanced NSCLC patients treated with hypofractionated chemoradiotherapy.

J. Sonke, E. Damen, J. Belderbos, 2017, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Influence of the number of elongated fiducial markers on the localization accuracy of the prostate

M. V. van Herk, J. Sonke, Josien A de Bois, 2012, Physics in medicine and biology.

The Accuracy of Deformable Registration for Adaptive Radiotherapy of Head and Neck Cancer

M. van Herk, J. J. Sonke, A. Mencarelli, 2009 .

Intrafraction Motion Management With MR-Guided Radiation Therapy.

J. Sonke, M. F. Fast, Minsong Cao, 2024, Seminars in radiation oncology.

Beyond the margin recipe: the probability of correct target dosage and tumor control in the presence of a dose limiting structure

J. Deasy, J. Siebers, M. V. van Herk, 2017, Physics in medicine and biology.

MRI-guided mid-position liver radiotherapy: Validation of image processing and registration steps.

M F Fast, T N van de Lindt, S R van Kranen, 2019, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Comparative study of respiratory motion correction techniques in cone-beam computed tomography.

Jan-Jakob Sonke, Simon Rit, Marcel van Herk, 2011, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

Memory-augmented Variational Adaptation for Online Few-shot Segmentation

Cees G. M. Snoek, E. Gavves, J. Sonke, 2023, 2023 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW).