Hong Ma

发表

Comparison of next generation sequencing technologies for transcriptome characterization

Naomi S. Altman, D. Soltis, Y. Hu, 2009, BMC Genomics.

Whole-genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis.

Hong Ma, Hongxing Yang, F. Chang, 2015, The Plant journal : for cell and molecular biology.

The cohesin loader SCC2 contains a PHD finger that is required for meiosis in land plants

Hong Ma, Hongkuan Wang, Wanyue Xu, 2020, PLoS genetics.

Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae)

Diego F. Morales-Briones, David C. Tank, Hong Ma, 2020, bioRxiv.

Aberrant imprinting may underlie evolution of parthenogenesis

Hong Ma, U. Grossniklaus, C. Baroux, 2018, Scientific Reports.

Rational flux-tuning of Halomonas bluephagenesis for co-production of bioplastic PHB and ectoine

Yiqing Zhao, Hong Ma, Guoqiang Chen, 2020, Nature Communications.

Evolution of plant MADS box transcription factors: evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications.

P. K. Wall, J. Leebens-Mack, Hong Ma, 2009, Molecular biology and evolution.

Genome-Wide Analysis of Basic/Helix-Loop-Helix Transcription Factor Family in Rice and Arabidopsis1[W]

Hong Ma, Dabing Zhang, Yujin Sun, 2006, Plant Physiology.

Phylogenetics and evolution of Su(var)3-9 SET genes in land plants: rapid diversification in structure and function

Hong Ma, Zhiduan Chen, Xinyu Zhu, 2011, BMC Evolutionary Biology.

Global Quantitative Proteomics Studies Revealed Tissue-Preferential Expression and Phosphorylation of Regulatory Proteins in Arabidopsis

Hong Ma, F. Chang, Xumin Zhang, 2020, International journal of molecular sciences.

The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors

Hong Ma, K. Feldmann, J. Bowman, 1990, Nature.

Evolution of the Brassicaceae-specific MS5-Like family and neofunctionalization of the novel MALE STERILITY 5 gene essential for male fertility in B. napus.

Hong Ma, Xinhua Zeng, Gang Wu, 2020, The New phytologist.

Angiosperm-Wide and Family-Level Analyses of AP2/ERF Genes Reveal Differential Retention and Sequence Divergence After Whole-Genome Duplication

Hong Ma, Juan Lin, Linbo Wang, 2019, Front. Plant Sci..

Widespread Whole Genome Duplications Contribute to Genome Complexity and Species Diversity in Angiosperms.

Hong Ma, Ji Qi, Ren Ren, 2018, Molecular plant.

Widespread genome duplications throughout the history of flowering plants.

D. Soltis, P. K. Wall, J. Leebens-Mack, 2006, Genome research.

Ancestral polyploidy in seed plants and angiosperms

Claude W. dePamphilis, Stephan C. Schuster, Jim Leebens-Mack, 2011, Nature.

Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication

Yi Hu, Jun Wen, Chien-Hsun Huang, 2016, Molecular biology and evolution.

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

Jim Leebens-Mack, Hong Ma, Claude W dePamphilis, 2010, BMC Evolutionary Biology.

Control of rice grain-filling and yield by a gene with a potential signature of domestication

Wei He, Ertao Wang, Hong Ma, 2008, Nature Genetics.

Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.

Jim Leebens-Mack, Hong Ma, Claude W dePamphilis, 2006, Molecular biology and evolution.

Genome-wide expression profiling and identification of gene activities during early flower development in Arabidopsis

Hong Ma, Baomin Feng, Naomi S. Altman, 2005, Plant Molecular Biology.

Analysis of Arabidopsis floral transcriptome: detection of new florally expressed genes and expansion of Brassicaceae-specific gene families

Hong Ma, F. Chang, Jie Cui, 2015, Front. Plant Sci..

Phylogenomic analyses of large-scale nuclear genes provide new insights into the evolutionary relationships within the rosids.

Hong Ma, Shu-Dong Zhang, De‐Zhu Li, 2016, Molecular phylogenetics and evolution.

Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

Yang Zhong, Yi Hu, Liming Cai, 2015, Molecular biology and evolution.

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms.

Hong Ma, Hongyan Shan, Ning Zhang, 2012, The New phytologist.

Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets.

Hong Ma, Ning Zhang, Hong Ma, 2017, The New phytologist.

Origins and evolution of the recA/RAD51 gene family: Evidence for ancient gene duplication and endosymbiotic gene transfer

Masatoshi Nei, Hong Ma, Hongzhi Kong, 2006, Proceedings of the National Academy of Sciences.

Phylogenetic detection of numerous gene duplications shared by animals, fungi and plants

Hong Ma, Xiaofan Zhou, Hong Ma, 2010, Genome Biology.

AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes

Xuan Ma, Hong Ma, Baomin Feng, 2012, BMC Plant Biology.

Extraction of Deep Phylogenetic Signal and Improved Resolution of Evolutionary Events within the recA/RAD51 Phylogeny

Hong Ma, Zhenhai Zhang, G. Bhardwaj, 2012, 1206.3340.

Rice male development under drought stress: phenotypic changes and stage-dependent transcriptomic reprogramming.

Xiaochun Ge, Hong Ma, Hongxing Yang, 2013, Molecular plant.

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

Andrea Zuccolo, Rod A Wing, Pamela S Soltis, 2011, Genome Biology.

Male fertility: A case of enzyme identity

Hong Ma, Dazhong Zhao, 2000, Current Biology.

The Arabidopsis MALE MEIOCYTE DEATH1 gene encodes a PHD-finger protein that is required for male meiosis.

Hong Ma, Xiaohui Yang, C. Makaroff, 2003, The Plant cell.

Dna sequence analysis: new applications with high throughput sequencing and new methods in studying gene families and human haplogroups

Hong Ma, S. Schaeffer, Yazhou Sun, 2012 .

The Arabidopsis ROCK-N-ROLLERS gene encodes a homolog of the yeast ATP-dependent DNA helicase MER3 and is required for normal meiotic crossover formation.

Hong Ma, Changbin Chen, Wei Zhang, 2005, The Plant journal : for cell and molecular biology.

Molecular control of microsporogenesis in Arabidopsis.

Hong Ma, F. Chang, Yingxiang Wang, 2011, Current opinion in plant biology.

Phylogenomic detection and functional prediction of genes potentially important for plant meiosis.

Hong Ma, H. Kong, Ji Yang, 2018, Gene.

ASK1, a SKP1 homolog, is required for nuclear reorganization, presynaptic homolog juxtaposition and the proper distribution of cohesin during meiosis in Arabidopsis

Hong Ma, N. W. Rigel, Xiaohui Yang, 2006, Plant Molecular Biology.

Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development

Hong Ma, F. Chang, C. You, 2016, Plant Cell.

F-box proteins regulate ethylene signaling and more.

Hong Ma, H. Kong, Xuelu Wang, 2009, Genes & development.

Cloning and expression analysis of TSK1, a wheat SKP1 homologue, and functional comparison with Arabidopsis ASK1 in male meiosis and auxin signalling.

Hong Ma, Yu Liang, K. Chong, 2006, Functional plant biology : FPB.

Deep mRNA Sequencing Analysis to Capture the Transcriptome Landscape of Zebrafish Embryos and Larvae

Hong Ma, Hongxing Yang, Genfeng Zhu, 2013, PloS one.

Maternal Rnf12/RLIM is required for imprinted X chromosome inactivation in mice

Michael R. Green, Stephen N. Jones, J. Lawrence, 2010, Nature.

Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families.

Hong Ma, C. dePamphilis, Wei Hu, 2008, Journal of integrative plant biology.

Proteomic identification of potential target proteins regulated by an ASK1-mediated proteolysis pathway

Xiaochun Ge, K. Cao, Hong Ma, 2006, Cell Research.

all four products of a single meiosis erecta meiosis and meiotic recombination by resequencing Landsberg genome-wide variations before and after Arabidopsis Analysis of Material

Hong Ma, Ji Qi, Tao Li, 2012 .

Analyses of functional conservation and divergence reveal requirement of bHLH010/089/091 for pollen development at elevated temperature in Arabidopsis.

Hong Ma, F. Chang, C. You, 2020, Journal of genetics and genomics = Yi chuan xue bao.

The PHD Finger Protein MMD1/DUET Ensures the Progression of Male Meiotic Chromosome Condensation and Directly Regulates the Expression of the Condensin Gene CAP-D3[OPEN]

Hong Ma, Hongkuan Wang, Jun Wang, 2016, Plant Cell.

Moderate drought causes dramatic floral transcriptomic reprogramming to ensure successful reproductive development in Arabidopsis

Hong Ma, Zhao Su, Xuan Ma, 2014, BMC Plant Biology.

Flower Development under Drought Stress: Morphological and Transcriptomic Analyses Reveal Acute Responses and Long-Term Acclimation in Arabidopsis[C][W]

Hong Ma, S. Assmann, Hui Guo, 2013, Plant Cell.

The BAM1/BAM2 Receptor-Like Kinases Are Important Regulators of Arabidopsis Early Anther Development[W]

Hong Ma, Changbin Chen, Brody J Deyoung, 2006, The Plant Cell Online.

Regulation of Arabidopsis early anther development by the mitogen-activated protein kinases, MPK3 and MPK6, and the ERECTA and related receptor-like kinases.

Hong Ma, K. Torii, Yujin Sun, 2008, Molecular plant.

Highly heterogeneous rates of evolution in the SKP1 gene family in plants and animals: functional and evolutionary implications.

J. Leebens-Mack, Hong Ma, C. dePamphilis, 2004, Molecular biology and evolution.

The ASK1 and ASK2 Genes Are Essential for Arabidopsis Early Development Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.017772.

Hong Ma, W. Peng, D. Xie, 2004, The Plant Cell Online.

The Arabidopsis SKP1 homolog ASK1 controls meiotic chromosome remodeling and release of chromatin from the nuclear membrane and nucleolus

Hong Ma, Xiaohui Yang, C. Makaroff, 2006, Journal of Cell Science.

Proteomic and phosphoproteomic analyses reveal extensive phosphorylation of regulatory proteins in developing rice anthers.

Hong Ma, C. You, W. Liang, 2015, The Plant journal : for cell and molecular biology.

The SCF(COI1) ubiquitin-ligase complexes are required for jasmonate response in Arabidopsis.

Hong Ma, W. Crosby, P. Genschik, 2002, The Plant cell.

The hornwort genome and early land plant evolution

Y. van de Peer, Hong Ma, Yuannian Jiao, 2020, Nature Plants.

Dual role of BKI1 and 14-3-3 s in brassinosteroid signaling to link receptor with transcription factors.

Zhi-Xin Wang, Hong Ma, Chi Zhang, 2011, Developmental cell.

Elevated temperature increases meiotic crossover frequency via the interfering (Type I) pathway in Arabidopsis thaliana

Hong Ma, Hongkuan Wang, G. Copenhaver, 2018, PLoS genetics.

The Arabidopsis thaliana DSB formation (AtDFO) gene is required for meiotic double-strand break formation.

Hong Ma, Cheng Zhang, Jun Zhu, 2012, The Plant journal : for cell and molecular biology.

The Arabidopsis CALLOSE DEFECTIVE MICROSPORE1 Gene Is Required for Male Fertility through Regulating Callose Metabolism during Microsporogenesis1[W][OPEN]

G. Ning, Hong Ma, Guoliang Wang, 2014, Plant Physiology.

The Arabidopsis thaliana PARTING DANCERS gene encoding a novel protein is required for normal meiotic homologous recombination.

Hong Ma, Changbin Chen, A. Wijeratne, 2005, Molecular biology of the cell.

Brassinosteroids control male fertility by regulating the expression of key genes involved in Arabidopsis anther and pollen development

Hong Ma, Lei Li, Wenjiao Zhu, 2010, Proceedings of the National Academy of Sciences.

Conservation and divergence in the meiocyte sRNAomes of Arabidopsis, soybean, and cucumber

Xiang Li, Hong Ma, X. Li, 2019 .

The Compositae Tree of Life in the age of phylogenomics

Rebecca B. Dikow, Michael S. Barker, Hong Ma, 2017 .

A Strategy for Screening Monoclonal Antibodies for Arabidopsis Flowers

Hong Ma, Yingxiang Wang, Lian Zhou, 2017, Front. Plant Sci..

Arabidopsis PARG1 is the key factor promoting cell survival among the enzymes regulating post-translational poly(ADP-ribosyl)ation

Xiaochun Ge, Hailei Zhang, Hong Ma, 2015, Scientific Reports.

Poly(ADP-ribose) polymerases regulate cell division and development in Arabidopsis roots.

Xiaochun Ge, Hong Ma, Qiao Wu, 2017, Journal of integrative plant biology.

Functional divergence of the duplicated AtKIN14a and AtKIN14b genes: critical roles in Arabidopsis meiosis and gametophyte development.

Jennelle L. Malcos, Hong Ma, J. C. Ambrose, 2007, The Plant journal : for cell and molecular biology.

Reply to Zwaenepoel et al.: Meeting the Challenges of Detecting Polyploidy Events from Transcriptomic Data.

Hong Ma, Ji Qi, Haifeng Wang, 2019, Molecular plant.

Detection of genomic variations and DNA polymorphisms and impact on analysis of meiotic recombination and genetic mapping

Hong Ma, Ji Qi, G. Copenhaver, 2014, Proceedings of the National Academy of Sciences.

An improved procedure for transformingArabidopsis thaliana (Landsbergerecta) root explant

Hong Ma, Hai Huang, 1992, Plant Molecular Biology Reporter.

flowering plants Widespread genome duplications throughout the history of Material Supplemental

D. Soltis, P. K. Wall, J. Leebens-Mack, 2006 .

The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages

Xiaochun Ge, Hong Ma, Changkui Guo, 2013, Plant Molecular Biology.

Tissue-Specific Transcriptomics Reveals an Important Role of the Unfolded Protein Response in Maintaining Fertility upon Heat Stress in Arabidopsis

Hong Ma, Hongxing Yang, F. Chang, 2017, Plant Cell.

Double-stranded DNA breaks and gene functions in recombination and meiosis

Hong Ma, Wuxing Li, 2006, Cell Research.

SSDP cofactors regulate neural patterning and differentiation of specific axonal projections.

Hong Ma, T. Becker, I. Bach, 2011, Developmental biology.

Development of flowering plant gametophytes.

Hong Ma, V. Sundaresan, 2010, Current topics in developmental biology.

The Arabidopsis AtRAD51 gene is dispensable for vegetative development but required for meiosis.

Hong Ma, B. Reiss, Changbin Chen, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Determination of Arabidopsis Floral Meristem ldentity

Hong Ma, Yukiko Mizukamil, 2002 .

EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6000 genes from a basal eudicot

S. Tanksley, P. K. Wall, J. Leebens-Mack, 2006, Plant Molecular Biology.

A Natural Variation in PLEIOTROPIC DEVELOPMENTAL DEFECTS Uncovers a Crucial Role for Chloroplast tRNA Modification in Translation and Plant Development[OPEN]

Hong Ma, Ling Jiang, Jinshui Yang, 2020, Plant Cell.

Characterization of an unusual Ds transposable element in Arabidopsis thaliana: Insertion of an abortive circular transposition intermediate

Hong Ma, Xiaohui Yang, C. Makaroff, 2005, Plant Molecular Biology.

Characterization of an unusual Ds transposable element in Arabidopsis thaliana: insertion of an abortive circular transposition intermediate

Hong Ma, Xiaohui Yang, C. Makaroff, 2004, Plant Molecular Biology.

Fanconi Anemia Ortholog FANCM Regulates Meiotic Crossover Distribution in Plants.

Xiang Li, Hong Ma, X. Li, 2021, Plant physiology.

Characterization of a novel putative zinc finger gene MIF1: involvement in multiple hormonal regulation of Arabidopsis development.

Wei Hu, Hong Ma, Hong Ma, 2006, The Plant journal : for cell and molecular biology.

CbCBF from Capsella bursa-pastoris enhances cold tolerance and restrains growth in Nicotiana tabacum by antagonizing with gibberellin and affecting cell cycle signaling

Hong Ma, Lihua Wu, Juan Lin, 2014, Plant Molecular Biology.

The GAOLAOZHUANGREN 1 Gene Encodes a Putative Glycosyltransferase that is Critical for Normal Development and Carbohydrate Metabolism

Hong Ma, Hai Huang, Jyan-chyun Jang, 2004 .

Formation of interference-sensitive meiotic cross-overs requires sufficient DNA leading-strand elongation

Hong Ma, Cong Wang, Jun Wang, 2015, Proceedings of the National Academy of Sciences.

The Nature of the Arabidopsis fon1 Mutations

Hong Ma, Hai Huang, 1998, Plant Cell.

Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms

Gynheung An, Masatoshi Nei, Hong Ma, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Proteasomal selection of multiprotein complexes recruited by LIM homeodomain transcription factors

Hong Ma, B. Tursun, C. Güngör, 2007, Proceedings of the National Academy of Sciences.

Cytological and Transcriptomic Analyses Reveal Important Roles of CLE19 in Pollen Exine Formation1[OPEN]

Hong Ma, F. Chang, C. You, 2017, Plant Physiology.

Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies

Saravanaraj N. Ayyampalayam, C. Neinhuis, Y. Hu, 2013, BMC Plant Biology.

The Sub1 nuclear protein protects DNA from oxidative damage

Hong Ma, Xincai Ji, Lijian Yu, 2015, Molecular and Cellular Biochemistry.

A Natural Variation in PLEIOTROPIC DEVELOPMENTAL DEFECTS

Wanli, Hong Ma, Ling Jiang, 2020 .

Meiosis: Interactions Between Homologous Chromosomes

Hong Ma, Zhukuan Cheng, Yingxiang Wang, 2014 .

An EST database for Liriodendron tulipifera L. floral buds: the first EST resource for functional and comparative genomics in Liriodendron

S. Tanksley, P. K. Wall, J. Leebens-Mack, 2008, Tree Genetics & Genomes.

Regulatory Genes in Plant Development: MADS

Hong Ma, 2009 .

Conservation and divergence in the AGAMOUS subfamily of MADS‐box genes: evidence of independent sub‐ and neofunctionalization events

Hong Ma, Claude W dePamphilis, Laura M Zahn, 2006, Evolution & development.

Beyond the ABC‐Model: Regulation of Floral Homeotic Genes

Hong Ma, L. Zahn, Baomin Feng, 2006 .

Missing links: the genetic architecture of flower and floral diversification

Hong Ma, Victor A. Albert, Claude W. dePamphilis, 2002 .

Ectopic expression of the floral homeotic gene AGAMOUS in transgenic Arabidopsis plants alters floral organ identity

Hong Ma, Y. Mizukami, 1992, Cell.

Plant Biology Research Comes of Age in China

Hong Ma, X. Deng, V. Karplus, 2006, The Plant Cell Online.

Step-wise and lineage-specific diversification of plant RNA polymerase genes and origin of the largest plant-specific subunits.

Hong Ma, Yaqiong Wang, 2015, The New phytologist.

GTP-binding proteins in plants: new members of an old family

Hong Ma, 1994, Plant Molecular Biology.

Carbon Starved Anther Encodes a MYB Domain Protein That Regulates Sugar Partitioning Required for Rice Pollen Development[W][OA]

Hong Ma, Dabing Zhang, W. Liang, 2010, Plant Cell.

The Rice Tapetum Degeneration Retardation Gene Is Required for Tapetum Degradation and Anther Development[W]

Hong Ma, D. Luo, Hai Huang, 2006, The Plant Cell Online.

The excess microsporocytes1 gene encodes a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in the Arabidopsis anther.

Hong Ma, Dazhong Zhao, Guanfang Wang, 2002, Genes & development.

The origins and early evolution of DNA mismatch repair genes—multiple horizontal gene transfers and co-evolution

M. Nei, Hong Ma, Zhenguo Lin, 2007, Nucleic acids research.

Defective Pollen Wall Is Required for Anther and Microspore Development in Rice and Encodes a Fatty Acyl Carrier Protein Reductase[C][W][OA]

Wanqi Liang, John Shanklin, Hong Ma, 2011, Plant Cell.

Comprehensive Analysis of Genic Male Sterility-Related Genes in Brassica rapa Using a Newly Developed Br300K Oligomeric Chip

Hong Ma, Yeon-Ki Kim, Y. Lim, 2013, PloS one.

Antiquity and evolution of the MADS-box gene family controlling flower development in plants.

M. Nei, Hong Ma, C. dePamphilis, 2003, Molecular biology and evolution.

Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth.

J. Leebens-Mack, Lena L. Landherr, Hong Ma, 2007, The Plant journal : for cell and molecular biology.

Flower development: open questions and future directions.

Elliot M Meyerowitz, Hong Ma, Nathanaël Prunet, 2014, Methods in molecular biology.

Signaling and Transcriptional Control of Reproductive Development in Arabidopsis

Xiaochun Ge, Hong Ma, F. Chang, 2010, Current Biology.

A terminator of floral stem cells.

Hong Ma, F. Ming, 2009, Genes & development.

Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plants.

Hong Ma, 2005, Annual review of plant biology.

Plant Reproduction: GABA Gradient, Guidance and Growth

Hong Ma, 2003, Current Biology.

MID1 plays an important role in response to drought stress during reproductive development.

Xiaochun Ge, Hong Ma, Changkui Guo, 2016, The Plant journal : for cell and molecular biology.

The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages

Xiaochun Ge, Hong Ma, Changkui Guo, 2013, Plant Molecular Biology.

Transcriptional regulation of bark freezing tolerance in apple (Malus domestica Borkh.)

Hong Ma, Liangsheng Zhang, Hao Li, 2020, Horticulture research.

Nuclear Phylotranscriptomics/Phylogenomics Support Numerous Polyploidization Events and Hypotheses for the Evolution of Rhizobial Nitrogen-Fixing Symbiosis in Fabaceae.

Y. Hu, Hong Ma, Ji Qi, 2021, Molecular plant.

Association of Chromosome Territories with the Nuclear Matrix

Hong Ma, R. Berezney, A. Siegel, 1999, The Journal of cell biology.

Meiocyte-Specific and AtSPO11-1–Dependent Small RNAs and Their Association with Meiotic Gene Expression and Recombination[OPEN]

Hong Ma, Binglian Zheng, Cong Wang, 2019, Plant Cell.

Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis.

Hong Ma, Pingli Lu, Ji Qi, 2012, Genome research.

Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice

Hong Ma, H. Xue, Ling-Li Chang, 2009, Cell Research.

Genetic Analyses of Meiotic Recombination in Arabidopsis

Hong Ma, A. Wijeratne, 2007 .

A Molecular Portrait of Arabidopsis Meiosis

Hong Ma, 2006, The arabidopsis book.

Genetics of meiotic prophase I in plants.

Hong Ma, O. Hamant, W. Cande, 2006, Annual review of plant biology.

Spatial and Temporal Dynamics of DNA Replication Sites in Mammalian Cells

Ronald Berezney, Hong Ma, P. Cheng, 1998, The Journal of cell biology.

Alternative splicing during Arabidopsis flower development results in constitutive and stage-regulated isoforms

Hong Ma, F. Chang, C. You, 2014, Front. Genet..

OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues

Xiaochun Ge, Hong Ma, Xuan Cheng, 2018, Plant Molecular Biology.

Expansion and Functional Divergence of Jumonji C-Containing Histone Demethylases: Significance of Duplications in Ancestral Angiosperms and Vertebrates1[OPEN]

Hong Ma, Hong Ma, Liangsheng Zhang, 2015, Plant Physiology.

Identification, sequence analysis and expression studies of novel anther-specific genes of Arabidopsis thaliana

Hong Ma, Yi Hu, P. Rubinelli, 1998, Plant Molecular Biology.

Regulated Expression of the Arabidopsis G Protein α Subunit Gene GPA1

Hong Ma, Hai Huang, C. A. Weiss, 1994, International Journal of Plant Sciences.

Conservation and divergence of small RNA pathways and microRNAs in land plants

Hong Ma, Lei Gao, C. You, 2017, Genome Biology.

Generation of a large-scale genomic resource for functional and comparative genomics in Liriodendron tulipifera L.

Saravanaraj N. Ayyampalayam, J. Leebens-Mack, Abdelali Barakat, 2011, Tree Genetics & Genomes.

Plant fertility defects induced by the enhanced expression of microRNA167

Hong Ma, Hai Huang, P. Ru, 2006, Cell Research.

Genome-Wide Analysis of the Cyclin Family in Arabidopsis and Comparative Phylogenetic Analysis of Plant Cyclin-Like Proteins1[w]

Claude W. dePamphilis, Hongzhi Kong, Yujin Sun, 2004, Plant Physiology.

Evolutionary history of histone demethylase families: distinct evolutionary patterns suggest functional divergence

Hong Ma, Xiaofan Zhou, 2008, BMC Evolutionary Biology.

Complex evolutionary history and diverse domain organization of SET proteins suggest divergent regulatory interactions.

Hong Ma, Hong Ma, Liangsheng Zhang, 2012, The New phytologist.

Phylotranscriptomics Resolves the Phylogeny of Pooideae and Uncovers Factors for Their Adaptive Evolution

Y. Hu, Hong Ma, Jie Huang, 2022, Molecular biology and evolution.

Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics

Y. Hu, Hong Ma, Ji Qi, 2016, Molecular biology and evolution.

Evolution of the leucine‐rich repeat receptor‐like protein kinase gene family: Ancestral copy number and functional divergence of BAM1 and BAM2 in Brassicaceae

Hong Ma, Ji Qi, Zaibao Zhang, 2016 .

Utility of Amborella trichopoda and Nuphar advena expressed sequence tags for comparative sequence analysis

D. Soltis, J. Leebens-Mack, J. Carlson, 2008 .

Genome‐wide Analysis of Kelch Repeat‐containing F‐box Family

Hong Ma, Yujin Sun, Xiaofan Zhou, 2007 .

Differential gene expression in Arabidopsis wild-type and mutant anthers: insights into anther cell differentiation and regulatory networks.

Hong Ma, R. Albert, Yujin Sun, 2007, The Plant journal : for cell and molecular biology.

Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor

Hong Ma, U. Grossniklaus, Changbin Chen, 2006, Development.

Comparative analysis of neural transcriptomes and functional implication of unannotated intronic expression

Y. Hu, Hong Ma, Yazhou Sun, 2011, BMC Genomics.

Genome Analysis Genome-Wide Analysis of Basic / Helix-Loop-Helix Transcription Factor Family in Rice and Arabidopsis 1 [ W ]

Hong Ma, Dabing Zhang, Yujin Sun, 2006 .

Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups.

Hong Ma, Dabing Zhang, Jinyuan Yin, 2009, Gene.

Regulation of Flower Development in Arabidopsis by SCF Complexes1

Hong Ma, L. Hobbie, D. Xie, 2004, Plant Physiology.

Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification

M. Nei, Hong Ma, H. Kong, 2009, Proceedings of the National Academy of Sciences.

BKI1 Regulates Plant Architecture through Coordinated Inhibition of the Brassinosteroid and ERECTA Signaling Pathways in Arabidopsis.

Hong Ma, F. Chang, Xuelu Wang, 2017, Molecular plant.

PERIANTH DEVELOPMENT IN THE BASAL MONOCOT TRIGLOCHIN MARITIMA (JUNCAGINACEAE)

D. Soltis, J. Leebens-Mack, Hong Ma, 2006 .

Stable and dynamic nucleosome states during a meiotic developmental process.

Hong Ma, Hong Ma, B. Pugh, 2011, Genome research.

developmental process Stable and dynamic nucleosome states during a meiotic Material Supplemental

Hong Ma, B. Pugh, Liye Zhang, 2011 .

RNA-seq analyses of multiple meristems of soybean: novel and alternative transcripts, evolutionary and functional implications

Hong Ma, Genfeng Zhu, Lei Wang, 2014, BMC Plant Biology.

MeioBase: a comprehensive database for meiosis

Hong Ma, Shuigeng Zhou, Hao Li, 2014, Front. Plant Sci..

Conservation and Divergence in the Meiocyte sRNAomes of Arabidopsis, Soybean, and Cucumber1[OPEN]

Hong Ma, Xiang Li, Cong Wang, 2019, Plant Physiology.

The Arabidopsis RAD51 paralogs RAD51B, RAD51D and XRCC2 play partially redundant roles in somatic DNA repair and gene regulation.

Hong Ma, Genfeng Zhu, Yingxiang Wang, 2014, The New phytologist.

The transcriptome landscape of Arabidopsis male meiocytes from high-throughput sequencing: the complexity and evolution of the meiotic process.

Pingli Lu, Hong Ma, Hong Ma, 2011, The Plant journal : for cell and molecular biology.

The soybean root-specific protein kinase GmWNK1 regulates stress-responsive ABA signaling on the root system architecture.

Xiaolong Yan, Hong Ma, Kristopher T Kahle, 2010, The Plant journal : for cell and molecular biology.

Analysis of the Arabidopsis floral proteome: detection of over 2 000 proteins and evidence for posttranslational modifications.

Hong Ma, Xiaofan Zhou, Baomin Feng, 2009, Journal of integrative plant biology.

The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression.

Naomi S. Altman, D. Soltis, J. Leebens-Mack, 2007, Trends in plant science.

Arabidopsis MALE STERILITY1 Encodes a PHD-Type Transcription Factor and Regulates Pollen and Tapetum Development[W]

N. Nagata, K. Shinozaki, Hong Ma, 2007, The Plant Cell Online.

Arabidopsis RAD51, RAD51C and XRCC3 proteins form a complex and facilitate RAD51 localization on chromosomes for meiotic recombination

Hong Ma, G. Copenhaver, Yingxiang Wang, 2017, PLoS genetics.

Reverse breeding: a novel breeding approach based on engineered meiosis

Hong Ma, Hans de Jong, Alisher Touraev, 2009, Plant biotechnology journal.

Phylogenomic Insights into Deep Phylogeny of Angiosperms Based on Broad Nuclear Gene Sampling

Charles S. P. Foster, Hong Ma, Xiaofan Zhou, 2020, Plant communications.

A minus-end-directed kinesin with plus-end tracking protein activity is involved in spindle morphogenesis.

A. Marcus, Hong Ma, J. C. Ambrose, 2005, Molecular biology of the cell.

The DYT1-interacting proteins bHLH010, bHLH089 and bHLH091 are redundantly required for Arabidopsis anther development and transcriptome.

Hong Ma, F. Chang, C. You, 2015, The Plant journal : for cell and molecular biology.

OsNAC2 encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice.

Hong Ma, Feng Ming, Hong Ma, 2015, The Plant journal : for cell and molecular biology.

The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice

Xiaochun Ge, Hong Ma, Wei Huang, 2018, Plant Cell.

The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.

Hong Ma, J. Li, Bo Lv, 2014, Plant & cell physiology.

Phosphorylation of SPOROCYTELESS/NOZZLE by the MPK3/6 Kinase Is Required for Anther Development1

Hong Ma, D. Ren, Zhi-hong Xu, 2017, Plant Physiology.

Molecular cell biology of male meiotic chromosomes and isolation of male meiocytes in Arabidopsis thaliana.

Hong Ma, Yingxiang Wang, L. Timofejeva, 2014, Methods in molecular biology.

Floral gene resources from basal angiosperms for comparative genomics research

Yi Hu, Pamela S Soltis, David G Oppenheimer, 2005, BMC Plant Biology.

Homolog interaction during meiotic prophase I in Arabidopsis requires the SOLO DANCERS gene encoding a novel cyclin‐like protein

Hong Ma, Yi Hu, Dazhong Zhao, 2002, The EMBO journal.

Whole-Genome Duplications in Pear and Apple

Hao Li, Hong Ma, Chien-Hsun Huang, 2019, The Pear Genome.

Cell Biological Characterization of Male Meiosis and Pollen Development in Rice

Hong Ma, K. Chong, Yunyuan Xu, 2005 .

Cell-type-dependent histone demethylase specificity promotes meiotic chromosome condensation in Arabidopsis

Hong Ma, Jinbiao Ma, Hongkuan Wang, 2020, Nature Plants.

Arabidopsis CBF3 and DELLAs positively regulate each other in response to low temperature

Hong Ma, Juan Lin, Mingqi Zhou, 2017, Scientific Reports.

The Arabidopsis ATK1 gene is required for spindle morphogenesis in male meiosis.

A. Marcus, Hong Ma, U. Grossniklaus, 2002, Development.

Regeneration and plantlet development from somatic tissues of Aristolochia fimbriata

Y. Hu, Lena L. Landherr, Hong Ma, 2009, Plant Cell, Tissue and Organ Culture (PCTOC).

Arabidopsis Genes AS1, AS2, and JAG Negatively Regulate Boundary-Specifying Genes to Promote Sepal and Petal Development1[W]

Hong Ma, Hai Huang, A. Dong, 2007, Plant Physiology.

Differential evolution of members of the rhomboid gene family with conservative and divergent patterns.

Hong Ma, Liangsheng Zhang, Ning Zhang, 2015, The New phytologist.

Towards a comprehensive integration of morphological and genetic studies of floral development.

D. Soltis, Hong Ma, P. Soltis, 2004, Trends in plant science.

The FLORAL ORGAN NUMBER4 Gene Encoding a Putative Ortholog of Arabidopsis CLAVATA3 Regulates Apical Meristem Size in Rice1[W]

Hong Ma, Jun Yang, D. Luo, 2006, Plant Physiology.

The DNA Replication Factor RFC1 Is Required for Interference-Sensitive Meiotic Crossovers in Arabidopsis thaliana

Hong Ma, G. Copenhaver, Yingxiang Wang, 2012, PLoS genetics.

Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms

Gregory W. Stull, Stephen A. Smith, D. Soltis, 2021, Nature Plants.

Phylogenomic analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving the diversifications, with insights into the complex biogeographic history in the Northern Hemisphere

Hong Ma, J. Wen, Chien-Hsun Huang, 2021, bioRxiv.

Phylotranscriptomics in Cucurbitaceae Reveal Multiple Whole Genome Duplications and Key Morphological and Molecular Innovations.

Y. Hu, Hong Ma, Jie Huang, 2020, Molecular plant.

Ultraconserved coding regions outside the homeobox of mammalian Hox genes

M. Nei, Hong Ma, Zhenguo Lin, 2008, BMC Evolutionary Biology.

Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere.

Hong Ma, J. Wen, Chien-Hsun Huang, 2022, Journal of integrative plant biology.

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

Hong Ma, H. Kong, Qiang Zhang, 2014, Nature Communications.

The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein

Hong Ma, Hai Huang, M. Tudor, 1995, Plant Molecular Biology.

The water lily genome and the early evolution of flowering plants

Yang Liu, Rolf Lohaus, Y. van de Peer, 2019, Nature.

Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower

Naomi S. Altman, Matthew A. Gitzendanner, D. Soltis, 2010, Proceedings of the National Academy of Sciences.

Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole genome duplications.

Y. Hu, Hong Ma, Ji Qi, 2020, Molecular biology and evolution.

The Amborella genome: an evolutionary reference for plant biology

Naomi S. Altman, D. Soltis, J. Palmer, 2008, Genome Biology.

Genetic analysis and mapping of rice (Oryza sativa L.) male-sterile (OsMS-L) mutant

Hong Ma, D. Luo, Hai Huang, 2005 .

Paternal RLIM/Rnf12 Is a Survival Factor for Milk-Producing Alveolar Cells

J. Lawrence, A. Hoffmann, Hong Ma, 2012, Cell.

Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae

Yi Hu, Ji Qi, Hong Ma, 2009, BMC Genomics.

Manipulation of flower structure in transgenic tobacco

Hong Ma, J. Bowman, E. Meyerowitz, 1992, Cell.

The 15 N‐terminal amino acids of hexokinase II are not required for in vivo function: Analysis of a truncated form of hexokinase II in Saccharomyces cerevisiae

D. Botstein, C. Walsh, Hong Ma, 1989, Proteins.

Gametophyte development

Hong Ma, Wuxing Li, 2002, Current Biology.

Conservation and divergence of ASK1 and ASK2 gene functions during male meiosis in Arabidopsis thaliana

Hong Ma, W. Crosby, E. Risseeuw, 2003, Plant Molecular Biology.

The hornwort genome and early land plant evolution

Y. van de Peer, Hong Ma, Yuannian Jiao, 2020, Nature Plants.

New insights into the role of DNA synthesis in meiotic recombination

Hong Ma, G. Copenhaver, Yingxiang Wang, 2016 .

The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history.

D. Soltis, J. Leebens-Mack, Lena L. Landherr, 2005, Genetics.

Recurrent genome duplication events likely contributed to both the ancient and recent rise of ferns.

Hong Ma, Ji Qi, Chien-Hsun Huang, 2020, Journal of integrative plant biology.

Spatially and temporally regulated expression of the MADS-box gene AGL2 in wild-type and mutant arabidopsis flowers

Hong Ma, Hong Ma, C. A. Flanagan, 1994, Plant Molecular Biology.

The Arabidopsis anaphase‐promoting complex/cyclosome subunit 8 is required for male meiosis

Hong Ma, Binglian Zheng, G. Copenhaver, 2019, The New phytologist.

The AtRAD51C Gene Is Required for Normal Meiotic Chromosome Synapsis and Double-Stranded Break Repair in Arabidopsis1

Hong Ma, Zhenguo Lin, Xiaohui Yang, 2005, Plant Physiology.

The SCFCOI1 Ubiquitin-Ligase Complexes Are Required for Jasmonate Response in Arabidopsis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.003368.

Hong Ma, W. Crosby, P. Genschik, 2002, The Plant Cell Online.

Phylogenetic Resolution of Deep Eukaryotic and Fungal Relationships Using Highly Conserved Low-Copy Nuclear Genes

Hong Ma, Yazhou Sun, D. Geiser, 2016, Genome biology and evolution.

Arabidopsis PTD is required for type I crossover formation and affects recombination frequency in two different chromosomal regions.

Hong Ma, G. Copenhaver, Zhengjia Wang, 2014, Journal of genetics and genomics = Yi chuan xue bao.

The AtRAD 51 C Gene Is Required for Normal Meiotic Chromosome Synapsis and Double-Stranded Break Repair in Arabidopsis 1

Hong Ma, Zhenguo Lin, Xiaohui Yang, 2005 .

Expansion and diversification of the SET domain gene family following whole-genome duplications in Populus trichocarpa

Hong Ma, Shiliang Zhou, Liang-sheng Zhang, 2012, BMC Evolutionary Biology.

Genetic Control of Anther Cell Division and Differentiation

Hong Ma, C. L. Hord, 2007 .

Genome-Wide Comparative Analysis and Expression Pattern of TCP Gene Families in Arabidopsis thaliana and Oryza sativa

Xuan Yao, Jian Wang, Hong Ma, 2007 .

Proteomics and transcriptomics analyses of Arabidopsis floral buds uncover important functions of ARABIDOPSIS SKP1-LIKE1

Hong Ma, Weimin Ni, B. Stanley, 2016, BMC Plant Biology.

SKP1 is involved in abscisic acid signalling to regulate seed germination, stomatal opening and root growth in Arabidopsis thaliana.

Hong Ma, K. Chong, Yunyuan Xu, 2012, Plant, cell & environment.

Members of the Arabidopsis-SKP1-like Gene Family Exhibit a Variety of Expression Patterns and May Play Diverse Roles in Arabidopsis1

Hong Ma, Weimin Ni, Baomin Feng, 2003, Plant Physiology.

The ABCs of Floral Evolution

Claude dePamphilis, Hong Ma, Hong Ma, 2000, Cell.

Preferential retention of the slowly evolving gene in pairs of duplicates in angiosperm genomes

Hong Ma, Juan Lin, Linbo Wang, 2020, Journal of Systematics and Evolution.

Separation of AG function in floral meristem determinacy from that in reproductive organ identity by expressing antisense AG RNA

Hong Ma, Y. Mizukami, 1995, Plant Molecular Biology.

Assignment of 44 Ds Insertions to the Linkage Map of Arabidopsis

Hong Ma, Hai Huang, Fengling Li, 1999, Plant Molecular Biology Reporter.

Expression of floral MADS-box genes in basal angiosperms: implications for the evolution of floral regulators.

D. Soltis, Hong Ma, P. Soltis, 2005, The Plant journal : for cell and molecular biology.

Stimulated Raman scattering microscopy and spectroscopy with a rapid scanning optical delay line.

Hong Ma, Minbiao Ji, Ruoyu He, 2017, Optics letters.

Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development.

G. Ning, Hong Ma, Yujin Sun, 2012, The Plant journal : for cell and molecular biology.

Arabidopsis TOE proteins convey a photoperiodic signal to antagonize CONSTANS and regulate flowering time

Hong Ma, Liping Zeng, Bailong Zhang, 2015, Genes & development.

Arabidopsis Cell Division Cycle 20.1 Is Required for Normal Meiotic Spindle Assembly and Chromosome Segregation[OPEN]

Hong Ma, Liangsheng Zhang, G. Copenhaver, 2015, Plant Cell.

Long-term maintenance of stable copy number in the eukaryotic SMC family: origin of a vertebrate meiotic SMC1 and fate of recent segmental duplicates

Hong Ma, Xiaofan Zhou, Alexandra Surcel, 2008 .

Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis

Wei Hu, Hong Ma, Yixing Wang, 2003, Plant Molecular Biology.

A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C 4 photosynthesis.

Hong Ma, M. McKain, Chien-Hsun Huang, 2022, Molecular plant.

The Largest Subunit of DNA Polymerase Delta Is Required for Normal Formation of Meiotic Type I Crossovers1[OPEN]

Hong Ma, Hongkuan Wang, Cong Wang, 2018, Plant Physiology.

Reevaluation of the evolutionary events within recA/RAD51 phylogeny

Hong Ma, Zhenhai Zhang, G. Bhardwaj, 2013, BMC Genomics.

The GAOLAOZHUANGREN1 gene encodes a putative glycosyltransferase that is critical for normal development and carbohydrate metabolism.

Hong Ma, Hai Huang, Jyan-chyun Jang, 2004, Plant & cell physiology.

A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families.

Y. Hu, Hong Ma, Ji Qi, 2018, Molecular phylogenetics and evolution.

Using nuclear genes to reconstruct angiosperm phylogeny at the species level: A case study with Brassicaceae species

Hong Ma, L. Cai, 2016 .

The Use of Low-copy Nuclear Genes for Reconstructing the Phylogeny of Low-level Taxonomic Hierarchies: Evidence from Brassicaceae

Hong Ma, M. Ding, Ning Zhang, 2012 .

Proteomic analysis of lysine acetylation provides strong evidence for involvement of acetylated proteins in plant meiosis and tapetum function

Hong Ma, Juanying Ye, Pingli Lu, 2018, The Plant journal : for cell and molecular biology.

DNA polymerase epsilon binds histone H3.1-H4 and recruits MORC1 to mediate meiotic heterochromatin condensation

Hong Ma, Danhua Jiang, Cong Wang, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Evolution and protein interactions of AP2 proteins in Brassicaceae: Evidence linking development and environmental responses.

Hong Ma, C. You, Liping Zeng, 2016, Journal of integrative plant biology.

Order-level fern plastome phylogenomics: new insights from Hymenophyllales.

Hong Ma, Li‐Yaung Kuo, Fay-Wei Li, 2018, American journal of botany.

COMPREHENSIVE PHYLOGENETIC ANALYSES OF ORCHIDACEAE USING NUCLEAR GENES AND EVOLUTIONARY INSIGHTS INTO EPIPHYTISM.

Hong Ma, Yi Hu, J. Downing, 2023, Journal of integrative plant biology.

The Tree of Life: China project

D. Soltis, Hong Ma, P. Soltis, 2016 .

Molecular genetic analyses of abiotic stress responses during plant reproductive development

Hong Ma, Zhao Su, Xinwei Ma, 2020, Journal of experimental botany.

Ectopic expression of the Arabidopsis MINI ZINC FINGER1 and MIF3 genes induces shoot meristems on leaf margins

Hong Ma, Wei Hu, Baomin Feng, 2011, Plant Molecular Biology.

Phylotranscriptomic Analyses Reveal Multiple Whole-Genome Duplication Events, the History of Diversification and Adaptations in the Araceae.

Y. Hu, Hong Ma, T. Yi, 2022, Annals of Botany.

Expansion and diversification of the SET domain gene family following whole-genome duplications in Populus trichocarpa

Hong Ma, Liangsheng Zhang, Shiliang Zhou, 2012, BMC Evolutionary Biology.

Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

Xuan Ma, Hong Ma, Claude W dePamphilis, 2010, Genome Biology.

Resources for targeted insertional and deletional mutagenesis in Arabidopsis

N. Fedoroff, Hong Ma, Hai Huang, 2003, Plant Molecular Biology.

Diverse trajectories of plastome degradation in holoparasitic Cistanche and the whereabouts of the lost plastid genes.

Hong Ma, C. Davis, Yuguo Wang, 2019, Journal of experimental botany.

Development: A Pathway to Plant Female Germ Cells

Hong Ma, Yingxiang Wang, 2011, Current Biology.

AtPRK2 promotes ROP1 activation via RopGEFs in the control of polarized pollen tube growth.

Hong Ma, Zhenbiao Yang, F. Chang, 2013, Molecular plant.

Conservation and divergence of small RNA pathways and microRNAs in land plants

Hong Ma, Lei Gao, Xuemei Chen, 2017, Genome Biology.

OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues

Xiaochun Ge, Hong Ma, Xuan Cheng, 2018, Plant Molecular Biology.

Phylotranscriptomic insight into Asteraceae diversity, polyploidy, and morphological innovation.

Y. Hu, Hong Ma, F. Luebert, 2021, Journal of integrative plant biology.

Sequence and Expression Studies of A‐, B‐, and E‐Class MADS‐Box Homologues in Eupomatia (Eupomatiaceae): Support for the Bracteate Origin of the Calyptra

D. Soltis, Hong Ma, P. Soltis, 2005, International Journal of Plant Sciences.

Aberrant imprinting may underlie evolution of parthenogenesis

Hong Ma, U. Grossniklaus, C. Baroux, 2018, Scientific Reports.

Abundant protein phosphorylation potentially regulates Arabidopsis anther development

Hong Ma, Xumin Zhang, Jianan Lu, 2016, Journal of experimental botany.

Moderate drought causes dramatic floral transcriptomic reprogramming to ensure successful reproductive development in Arabidopsis

Hong Ma, Zhao Su, Xuan Ma, 2014, BMC Plant Biology.

Arabidopsis Genes AS 1 , AS 2 , and JAG Negatively Regulate Boundary-Specifying Genes to Promote Sepal and Petal Development 1 [ W ]

Hong Ma, Hai Huang, A. Dong, 2008 .

Developmental Mechanisms of Fleshy Fruit Diversity in Rosaceae.

Hong Ma, Lei Guo, Zhongchi Liu, 2020, Annual review of plant biology.

ANAC019 is required for recovery of reproductive development under drought stress in Arabidopsis

Hong Ma, Zhao Su, Noor Liyana Sukiran, 2019, Plant Molecular Biology.

Reply: The BIF Domain Is Structurally and Functionally Distinct from Other Types of ACT-Like Domains[OPEN]

Hong Ma, F. Chang, Jie Cui, 2017, Plant Cell.

Overexpression of the soybean GmWNK1 altered the sensitivity to salt and osmotic stress in Arabidopsis.

Xiaolong Yan, Hong Ma, Hong Ma, 2011, Journal of plant physiology.

PXL1 and SERKs act as receptor–coreceptor complexes for the CLE19 peptide to regulate pollen development

Hong Ma, J. Chai, F. Chang, 2023, Nature communications.

(Agrobacterium; binary vector; chromosome walking; end-specific probe; hygromycin; integrative vector; plasmid; recom- binant DNA)

Hong Ma, J. Bowman, E. Meyerowitz, 1992 .

Regulation of Arabidopsis Early Anther Development by Putative Cell‐Cell Signaling Molecules and Transcriptional Regulators

Hong Ma, Changbin Chen, Yu Sun, 2007 .

Missing links: the genetic architecture of flowers [correction of flower] and floral diversification.

D. Soltis, Hong Ma, P. Soltis, 2002, Trends in plant science.

Nuclear phylogeny and insights into whole-genome duplications and reproductive development of Solanaceae plants

Hong Ma, Jie Huang, Chien-Hsun Huang, 2023, Plant communications.

CbCBF from Capsella bursa-pastoris enhances cold tolerance and restrains growth in Nicotiana tabacum by antagonizing with gibberellin and affecting cell cycle signaling

Hong Ma, Lihua Wu, Juan Lin, 2014, Plant Molecular Biology.

Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements.

Jonathan D. G. Jones, J. D. Jones, T. Volpe, 1995, Genes & development.

Adaptive evolution of the enigmatic Takakia now facing climate change in Tibet

Yang Liu, Hong Ma, F. Haas, 2023, Cell.

Determination of Arabidopsis floral meristem identity by AGAMOUS.

Hong Ma, H. Ma, Y. Mizukami, 1997, The Plant cell.

Isolation and sequence analysis of TGA1 cDNAs encoding a tomato G protein α subunit

Hong Ma, Hai Huang, M. Yanofsky, 1991 .

The unfolding drama of flower development: recent results from genetic and molecular analyses.

Hong Ma, H. Ma, 1994, Genes & development.

Chromatin and Epigenetics

Hong Ma, D. Wagner, A. Amtmann, 2015, Plant Physiology.

One-sentence summary: FANCM has a role in shaping meiotic crossover in plants, and its function in meiotic bivalent formation has diverged in Arabidopsis and lettuce

Hong Ma, X. Li, Yingxiang Wang, 2021 .

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels

P. K. Wall, J. Leebens-Mack, Lena L. Landherr, 2010 .

The Sub1 nuclear protein protects DNA from oxidative damage

Hong Ma, Xincai Ji, Lijian Yu, 2015, Molecular and Cellular Biochemistry.

SCFRMF mediates degradation of the meiosis-specific recombinase DMC1

Zhanghua Wu, Hong Ma, C. You, 2023, Nature communications.

Arabidopsis Cell Division Cycle 20.1 Is Required for Normal Meiotic Spindle Assembly and Chromosome Segregation[OPEN]

Hong Ma, Liangsheng Zhang, G. Copenhaver, 2015, Plant Cell.

Origins and evolution of the recA/RAD51 gene family: Evidence for ancient gene duplication and endosymbiotic gene transfer

M. Nei, Hong Ma, Zhenguo Lin, 2006, Proceedings of the National Academy of Sciences of the United States of America.

The ASK1 gene regulates development and interacts with the UFO gene to control floral organ identity in Arabidopsis.

Hong Ma, M. Yang, H. Ma, 1999, Developmental genetics.

Floral gene resources from basal angiosperms for comparative genomics research

D. Soltis, Y. Hu, S. Tanksley, 2005, BMC Plant Biology.

Behind the Scenes: Planning a Multispecies Microarray Experiment

Laura M. Zahn, Claude W. dePamphilis, Hong Ma, 2006 .

Flower Development under Drought Stress: Morphological and Transcriptomic Analyses Reveal Acute Responses and Long-Term Acclimation in Arabidopsis[C][W]

Hong Ma, S. Assmann, Hui Guo, 2013, Plant Cell.

ANAC019 is required for recovery of reproductive development under drought stress in Arabidopsis

Hong Ma, Zhao Su, J. C. Ma, 2019, Plant Molecular Biology.

An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community

E. Birney, J. Eppig, E. Mjolsness, 2010, Plant Cell.

Association of Chromosome Territories with the Nuclear Matrix

Hong Ma, R. Berezney, A. Siegel, 1999, The Journal of cell biology.

Stable and dynamic nucleosome states during a meiotic developmental process.

Hong Ma, Liye Zhang, Frank Pugh, 2011, Genome research.

Arabidopsis Genes AS1, AS2 ,a ndJAG Negatively Regulate Boundary-Specifying Genes to Promote

Hong Ma, Hai Huang, A. Dong, 2008 .

Isolation of Meiocytes and Cytological Analyses of Male Meiotic Chromosomes in Soybean, Lettuce, and Maize.

Hong Ma, Cong Wang, Yingxiang Wang, 2023, Methods in molecular biology.

Phylogenomics insights into gene evolution, rapid species diversification, and morphological innovation of the apple tribe (Maleae, Rosaceae).

Hong Ma, Chien-Hsun Huang, Yujie Li, 2023, The New phytologist.

The flowering transition and florigen

Hong Ma, Qilu Yu, 2001, Current Biology.

Cell biological analyses of anther morphogenesis and pollen viability in Arabidopsis and rice.

Hong Ma, F. Chang, Yue Jin, 2014, Methods in molecular biology.

Genome duplications, genomic conflict, and rapid phenotypic evolution characterize the Cretaceous radiation of Fagales

Gregory W. Stull, Stephen A. Smith, Hong Ma, 2023, bioRxiv.

Tree2GD: a phylogenomic method to detect large-scale gene duplication events

Hong Ma, Ji Qi, Yamao Chen, 2022, Bioinform..

Phylogenetic detection of numerous gene duplications shared by animals, fungi and plants

Hong Ma, Zhenguo Lin, Xiaofan Zhou, 2010, Genome Biology.

Cohesin Interaction with Centromeric Minichromosomes Shows a Multi-Complex Rod-Shaped Structure

Hong Ma, D. Koshland, R. Simpson, 2008, PloS one.

Chromatin and Epigenetics

Hong Ma, D. Wagner, A. Amtmann, 2015, Plant Physiology.