H. Richard

发表

Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

Marcel H. Schulz, S. Haas, H. Lehrach, 2010, Nucleic acids research.

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

Marcel H. Schulz, S. Haas, H. Lehrach, 2008, Science.

Assessing conservation of alternative splicing with evolutionary splicing graphs

Diego J. Zea, H. Richard, É. Laine, 2020, bioRxiv.

Comprehensive identification and quantification of microbial transcriptomes by genome-wide unbiased methods.

H. Richard, P. Bessières, S. Aymerich, 2011, Current opinion in biotechnology.

The genome of a songbird

Albert J. Vilella, Andreas R. Pfenning, Miriam K. Konkel, 2010, Nature.

X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes

K. Friend, M. Shaw, E. Haan, 2015, Molecular Psychiatry.

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

Gunnar Rätsch, Emmanuel Dias-Neto, Niranjan Nagarajan, 2019, bioRxiv.

Transcripts’ evolutionary history and structural dynamics give mechanistic insights into the functional diversity of the JNK family

Diego J. Zea, H. Richard, É. Laine, 2019, bioRxiv.

Transcripts’ evolutionary history and structural dynamics give mechanistic insights into the functional diversity of the JNK family

Diego J. Zea, H. Richard, É. Laine, 2017, bioRxiv.

The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum

A. Falciatore, H. Richard, A. Carbone, 2014, BMC Genomics.

Jointly aligning a group of DNA reads improves accuracy of identifying large deletions

M. Frith, K. Asai, H. Richard, 2017, Nucleic acids research.

Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae.

B. Prum, H. Richard, J. Rousset, 2005, Genome research.

Identification of programmed ribosomal-1 frameshifting sites in the genome of Saccharomyces cerevisiae

B. Prum, H. Richard, J. Rousset, 2005 .

Rise and Fall of SARS-CoV-2 Lineage A.27 in Germany

H. Richard, T. Wolff, L. Grabenhenrich, 2021, Viruses.

PureCLIP: capturing target-specific protein–RNA interaction footprints from single-nucleotide CLIP-seq data

Annalisa Marsico, Sabrina Krakau, Hugues Richard, 2017, Genome Biology.

DNA-Seq Error Correction Based on Substring Indices

Marcel H. Schulz, David Weese, Hugues Richard, 2017, Algorithms for Next-Generation Sequencing Data.

Fiona: a parallel and automatic strategy for read error correction

Marcel H. Schulz, Knut Reinert, David Weese, 2014, Bioinform..

Erratum to: Mutation screening in 86 known X-linked mental retardation genes by droplet-based multiplex PCR and massive parallel sequencing

S. Haas, Wei Chen, H. Richard, 2009, The HUGO Journal.

Mutation screening in 86 known X-linked mental retardation genes by droplet-based multiplex PCR and massive parallel sequencing

Hao Hu, Hugues Richard, Stefan A. Haas, 2009, The HUGO Journal.

PureCLIP: capturing target-specific protein–RNA interaction footprints from single-nucleotide CLIP-seq data

Annalisa Marsico, Sabrina Krakau, Hugues Richard, 2017, Genome Biology.

Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance

Gunnar Rätsch, Emmanuel Dias-Neto, Niranjan Nagarajan, 2019, bioRxiv.

The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum

A. Falciatore, H. Richard, A. Carbone, 2014, BMC Genomics.

SPA: simple web tool to assess statistical significance of DNA patterns

Hugues Richard, Grégory Nuel, H. Richard, 2003, Nucleic Acids Res..

Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries

Gilles Fischer, Hugues Richard, Alexandre Gillet-Markowska, 2015, Bioinform..

A global metagenomic map of urban microbiomes and antimicrobial resistance

Stephanie L. Hyland, Nora C. Toussaint, Paweł P. Łabaj, 2021, Cell.

Mutations in the gdpP gene are a clinically relevant mechanism for β-lactam resistance in meticillin-resistant Staphylococcus aureus lacking mec determinants

S. Fuchs, H. Richard, M. Laue, 2021, Microbial genomics.

Meet-U: Educating through research immersion

Alessandra Carbone, Yann Ponty, Guillaume Bouvier, 2018, PLoS Comput. Biol..

The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report

Emmanuel Dias-Neto, Joel Dudley, Mark Hernandez, 2016, Microbiome.

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data

Hélène Touzet, Hugues Richard, Chadi Saad, 2018, BMC Bioinformatics.

seq++: analyzing biological sequences with a range of Markov-related models

Vincent Miele, David Robelin, Grégory Nuel, 2005, Bioinform..

Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models

Pierre Nicolas, Hugues Richard, Bogdan Mirauta, 2014, Bioinform..