K. Holt
发表
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
J. Wain,
I. Goodhead,
G. Dougan,
2008,
Nature Genetics.
Heng Li,
Julian Parkhill,
Kathryn E. Holt,
2009,
Bioinform..
ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data
Ryan R. Wick,
Ruth M. Hall,
Kathryn E. Holt,
2015,
BMC Genomics.
K. Holt,
R. Wick,
L. Judd,
2019,
Genome Biology.
M. Inouye,
S. Johnston,
K. Holt,
2015,
Cell Host & Microbe.
David J. Edwards,
K. Holt,
2013,
Microbial Informatics and Experimentation.
K. Holt,
J. Parkhill,
S. Bentley,
2013,
Nature Genetics.
M. Blaser,
E. Denamur,
M. Aslett,
2016,
Nature Microbiology.
Justin Zobel,
Michael Inouye,
Harriet Dashnow,
2014,
bioRxiv.
D. Gordon,
K. Holt,
P. Pavli,
2016,
Gut.
Jonathan Wilksch,
Constance Schultsz,
Paul N. Newton,
2015,
Proceedings of the National Academy of Sciences.
K. Holt,
S. Brisse,
R. Wick,
2018,
Microbial genomics.
K. Holt,
S. Brisse,
R. Wick,
2018
.
Justin Zobel,
Bernard J. Pope,
Michael Inouye,
2014
.
N. P. H. Lan,
P. Newton,
K. Holt,
2019,
Genome Medicine.
K. Holt,
R. Wick,
S. Duchêne,
2019,
PLoS genetics.
N. P. H. Lan,
P. Newton,
K. Holt,
2019,
Genome Medicine.
K. Holt,
S. Brisse,
R. Wick,
2018,
Genome Medicine.
K. Holt,
N. Thomson,
R. Follador,
2016,
Microbial genomics.
K. Holt,
R. Mostowy,
2018,
Trends in microbiology.
Kathryn E Holt,
W. Hanage,
K. Holt,
2010,
Current opinion in microbiology.
K. Holt,
R. Hall,
J. Kenyon,
2020,
Microbial genomics.
K. Holt,
M. Hamidian,
R. Wick,
2019,
Microbial genomics.
K. Holt,
R. Hall,
J. Kenyon,
2019,
bioRxiv.
K. Holt,
M. Hamidian,
R. Wick,
2019,
bioRxiv.
David B. Ascher,
Ryan R. Wick,
Louise M. Judd,
2017,
bioRxiv.
K. Holt,
D. Ascher,
J. Hawkey,
2017,
bioRxiv.
K. Holt,
M. Hamidian,
R. Hall,
2015,
The Journal of antimicrobial chemotherapy.
Christine J. Boinett,
K. Holt,
F. Weill,
2019,
Nature Communications.
K. Holt,
Florent Lassalle,
R. Wick,
2020,
The ISME Journal.
K. Holt,
Florent Lassalle,
R. Wick,
2019,
bioRxiv.
M. Inouye,
K. Holt,
P. Sly,
2014,
Front. Immunol..
Ryan R. Wick,
Louise M. Judd,
Claire L. Gorrie,
2016,
bioRxiv.
K. Holt,
A. Sundsfjord,
S. Brisse,
2021,
medRxiv.
Kathryn E. Holt,
Firdausi Qadri,
Gordon Dougan,
2019,
bioRxiv.
K. Holt,
R. Wick,
R. Hall,
2018,
Microbiology Resource Announcements.
K. Holt,
R. Wick,
Steven J. Nigro,
2018
.
Stephen C. Watts,
M. Inouye,
K. Holt,
2019,
bioRxiv.
Amy K. Cain,
Christine J. Boinett,
Gemma C. Langridge,
2019,
Microbial genomics.
David J. Edwards,
K. Holt,
J. Hawkey,
2015,
bioRxiv.
Emergence of a Globally Dominant IncHI1 Plasmid Type Associated with Multiple Drug Resistant Typhoid
S. Nair,
J. Wain,
G. Dougan,
2011,
PLoS neglected tropical diseases.
David J. Edwards,
K. Holt,
J. Hawkey,
2013,
BMC Genomics.
K. Holt,
A. Jenney,
C. Gorrie,
2015,
Genome Announcements.
M. Inouye,
D. Bowtell,
M. Southey,
2011
.
K. Holt,
A. Millar,
J. Whelan,
2006,
Plant Methods.
Christopher J. Tonkin,
S. Ralph,
K. Holt,
2020,
mSystems.
Kathryn E Holt,
K. Holt,
R. Hall,
2016,
The Journal of antimicrobial chemotherapy.
Carlos H. M. Rodrigues,
K. Holt,
S. Dunstan,
2019,
PloS one.
S. Clare,
G. Dougan,
A. Jansen,
2011,
PLoS pathogens.
S. Hallam,
K. Holt,
C. Lamborg,
2020,
The ISME Journal.
Julian Parkhill,
Roland Grunow,
Christiane Bouchier,
2017,
Science.
Jonathan M. Monk,
B. Palsson,
K. Holt,
2020,
PLoS genetics.
Jonathan M. Monk,
B. Palsson,
K. Holt,
2019,
bioRxiv.
K. Holt,
J. Hawkey,
M. Hamidian,
2015,
Genome Announcements.
M. Inouye,
K. Holt,
C. Khor,
2019,
bioRxiv.
K. Holt,
A. Cheng,
T. Haines,
2021,
BMJ Open.
M. Inouye,
K. Holt,
C. Khor,
2020,
Nature Communications.
M. Khoury,
K. Holt,
M. Khoury,
2021,
Genome Medicine.
K. Holt,
J. Geoghegan,
J. Hawkey,
2017,
BMC Evolutionary Biology.
K. Holt,
J. Geoghegan,
J. Hawkey,
2017,
bioRxiv.
J. P. Davis,
David J. Edwards,
M. Touchon,
2017,
Nature Communications.
Kenneth D. Doig,
K. Holt,
F. Portaels,
2012,
BMC Genomics.
K. Holt,
H. Verbruggen,
R. Wick,
2020,
PeerJ.
K. Holt,
D. Aanensen,
S. Brisse,
2022,
bioRxiv.
E. Holmes,
S. Ho,
K. Holt,
2016,
BMC Evolutionary Biology.
Amy K. Cain,
Christine J. Boinett,
K. Holt,
2018,
Scientific Reports.
K. Holt,
M. Lam,
K. Wyres,
2020,
Nature Reviews Microbiology.
K. Holt,
R. Wick,
L. Judd,
2019,
The Journal of antimicrobial chemotherapy.
K. Holt,
J. Hawkey,
M. Hamidian,
2018,
bioRxiv.
K. Holt,
R. Wick,
L. Judd,
2018,
bioRxiv.
David J. Edwards,
K. Holt,
S. Baker,
2015,
Genome biology and evolution.
K. Holt,
N. Thomson,
R. Follador,
2016,
bioRxiv.
J. Denburg,
S. Johnston,
K. Holt,
2008,
Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology.
Stephen C. Watts,
K. Holt,
S. Brisse,
2021,
Research in microbiology.
K. Holt,
R. Wick,
2020,
F1000Research.
Mark B. Schultz,
A. Zemla,
K. Holt,
2016,
Nature Microbiology.
K. Holt,
M. Achtman,
D. Aanensen,
2022,
Philosophical Transactions of the Royal Society B.
K. Holt,
F. Weill,
W. F. Fricke,
2019,
Microbial Genomics.
K. Holt,
N. Thomson,
S. Mcgloughlin,
2022,
Nature Communications.
K. Holt,
J. Parkhill,
F. Weill,
2012,
Journal of Clinical Microbiology.
Stephen C. Watts,
K. Holt,
S. Brisse,
2020,
bioRxiv.
K. Holt,
Z. Dyson,
2021,
bioRxiv.
K. Holt,
D. Aanensen,
S. Brisse,
2022,
bioRxiv.
K. Holt,
A. Sundsfjord,
Erik Hjerde,
2022,
Gut microbes.
K. Holt,
R. Wick,
L. Judd,
2021,
bioRxiv.
K. Holt,
S. Brisse,
R. Wick,
2017,
Nature Communications.
M. Inouye,
K. Holt,
C. Dolecek,
2023,
Communications biology.
David J. Edwards,
K. Holt,
S. Baker,
2014,
bioRxiv.
K. Holt,
M. Levine,
R. Robins-Browne,
2018,
Nature Microbiology.
K. Holt,
D. Lye,
J. Teo,
2016,
Scientific Reports.
G. Dougan,
K. Holt,
D. Pickard,
2014,
Research in microbiology.
K. Holt,
K. Yahara,
S. Kayama,
2022,
Microbial genomics.
K. Holt,
B. Shao,
Zhangqi Shen,
2021
.
K. Holt,
R. Gomi,
K. Wyres,
2020,
bioRxiv.
G. Dougan,
K. Holt,
A. Pollard,
2019,
The Journal of antimicrobial chemotherapy.
K. Holt,
S. Mostowy,
V. Torraca,
2022,
bioRxiv.
K. Holt,
R. Wick,
L. Judd,
2023,
PLoS Comput. Biol..
K. Holt,
J. Hinds,
S. Manna,
2017,
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
G. Dougan,
K. Holt,
F. Qadri,
2020,
PLoS neglected tropical diseases.
A Shigella sonnei clone with extensive drug resistance associated with waterborne outbreaks in China
Chaojie Yang,
K. Holt,
Haijian Zhou,
2022,
Nature Communications.
K. Holt,
A. Sundsfjord,
J. Hawkey,
2022,
bioRxiv.
I. Okeke,
K. Holt,
T. Azarian,
2022,
Microbial genomics.
Ryan R. Wick,
Kathryn E. Holt,
Louise M. Judd,
2016,
bioRxiv.
J. Farrar,
G. Dougan,
K. Holt,
2014,
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
M. Inouye,
A. Custovic,
S. Johnston,
2018,
eLife.
J. Wain,
K. Holt,
C. Mazzoni,
2010,
The Journal of antimicrobial chemotherapy.
G. Dougan,
S. Whitehead,
K. Holt,
2009,
Genome research.
G. Dougan,
K. Holt,
D. Pickard,
2014
.
K. Holt,
L. Irber,
A. Viehweger,
2021,
bioRxiv.
K. Holt,
K. Wyres,
2018,
Current opinion in microbiology.
Yonghong Xiao,
K. Holt,
N. Thomson,
2020,
Emerging Infectious Diseases.
K. Holt,
K. Wyres,
2016,
Trends in microbiology.
David J. Edwards,
K. Holt,
G. Hogg,
2015,
Health Information Science and Systems.
Matthias Reumann,
Saurabh Garg,
Carlos Queiroz,
2015,
Health Inf. Sci. Syst..
Kathryn E Holt,
K. Holt,
F. Weill,
2018,
Science.
K. Holt,
R. Wick,
2021,
bioRxiv.
K. Holt,
J. Hawkey,
R. Wick,
2021,
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
Paul Turner,
Julian Parkhill,
Jacqueline A. Keane,
2015,
Nature Genetics.
Stephen C. Watts,
M. Inouye,
S. Johnston,
2018,
Cell Host & Microbe.
Stephen C. Watts,
M. Inouye,
S. Johnston,
2017,
bioRxiv.
Ryan R. Wick,
Louise M. Judd,
Claire L. Gorrie,
2017,
bioRxiv.
K. Holt,
R. Robins-Browne,
D. Hocking,
2016,
Front. Cell. Infect. Microbiol..
K. Holt,
R. Wick,
L. Judd,
2018,
bioRxiv.
Mark B. Schultz,
David J. Edwards,
K. Holt,
2016,
Microbial genomics.
K. Holt,
T. Tan,
L. Hsu,
2015,
Antimicrobial Agents and Chemotherapy.
Yang Wang,
K. Holt,
Zhangqi Shen,
2022,
Nature Food.
K. Holt,
S. Djordjevic,
J. Hawkey,
2019,
Microorganisms.
Mark B. Schultz,
G. Dougan,
K. Holt,
2016,
Microbial genomics.
Justin Zobel,
Ryan R. Wick,
Kathryn E. Holt,
2015,
bioRxiv.
Andries J. van Tonder,
M. Quail,
G. Dougan,
2010,
Proceedings of the National Academy of Sciences.
K. Holt,
J. Hawkey,
L. Judd,
2022,
The ISME Journal.
David J. Edwards,
E. Holmes,
K. Holt,
2016,
bioRxiv.
K. Holt,
S. Baker,
N. Thomson,
2016,
Nature Reviews Microbiology.
P. Ashton,
S. Nair,
T. Dallman,
2019,
bioRxiv.
Ryan R. Wick,
Louise M. Judd,
Kathryn E. Holt,
2019,
Genome Biology.
Stephen C. Watts,
K. Holt,
R. Wick,
2021,
Nature Communications.
K. Holt,
S. Brisse,
R. Wick,
2017,
bioRxiv.
Torsten Seemann,
Steven Y. C. Tong,
Susan Ballard,
2013,
mBio.
Andrew J. Page,
G. Dougan,
K. Holt,
2013,
PloS one.
J. Banfield,
K. Holt,
R. Wick,
2020,
Applied and Environmental Microbiology.
K. Holt,
J. Hawkey,
R. Wick,
2021,
bioRxiv.
G. Dougan,
K. Holt,
S. Baker,
2016,
eLife.
Julian Parkhill,
Brian White,
Gemma C. Langridge,
2009,
BMC Genomics.
Jacqueline A. Keane,
Richard Holliman,
Thomas R Connor,
2016,
Nature Communications.
G. Dougan,
K. Holt,
S. Baker,
2016,
PLoS neglected tropical diseases.
J. Farrar,
G. Dougan,
K. Holt,
2011,
Open Biology.
B. H. Manh,
J. Farrar,
G. Dougan,
2011,
PLoS neglected tropical diseases.
K. Holt,
P. Harrison,
T. Seemann,
2014,
Genome biology and evolution.
S. Nair,
G. Dougan,
K. Holt,
2016,
PLoS neglected tropical diseases.
Richard J. Goater,
I. Okeke,
K. Holt,
2021,
bioRxiv.
K. Holt,
M. Medina,
H. Verbruggen,
2020,
Current Biology.
Justin Zobel,
Michael Inouye,
Kathryn E Holt,
2012,
BMC Genomics.
K. Holt,
S. Baker,
N. Thomson,
2015,
Microbial genomics.
K. Holt,
Yang Wang,
Congming Wu,
2021,
The Journal of antimicrobial chemotherapy.
Jonathan M. Monk,
K. Holt,
S. Brisse,
2021,
bioRxiv.
R. Acevedo,
K. Holt,
Camilo Berríos-Pastén,
2020,
bioRxiv.
Correction to: Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales
K. Holt,
Florent Lassalle,
R. Wick,
2020,
The ISME Journal.
W. Rabsch,
S. Clare,
G. Dougan,
2013,
mBio.
K. Holt,
A. Sundsfjord,
Ø. Samuelsen,
2021,
bioRxiv.
K. Holt,
A. Sundsfjord,
S. Brisse,
2021,
Gut microbes.
K. Holt,
S. Mcgloughlin,
J. Hawkey,
2020,
BMC Infectious Diseases.
David J. Edwards,
K. Holt,
N. Thomson,
2017,
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data
David J. Edwards,
K. Holt,
J. Hawkey,
2015,
BMC Genomics.
Michael Inouye,
Scott C. Ritchie,
Stephen C. Watts,
2018,
bioRxiv.
K. Holt,
J. Hawkey,
R. Wick,
2021,
Genome Biology.
Michael Inouye,
Myron M. Levine,
Kathryn E. Holt,
2016,
Microbial genomics.
Stephen C. Watts,
K. Holt,
2019,
Journal of Clinical Microbiology.
D. W. Kim,
E. Holmes,
J. Farrar,
2012,
Nature Genetics.
Ryan R. Wick,
Kathryn E. Holt,
K. Holt,
2019
.
T. Dallman,
Z. Iqbal,
K. Holt,
2020,
Nature Communications.
K. Holt,
M. Medina,
H. Verbruggen,
2021,
Current Biology.
T. Clark,
F. Balloux,
K. Holt,
2018,
Science Advances.
M. Inouye,
J. Zobel,
K. Holt,
2020,
bioRxiv.
K. Holt,
R. Wick,
2021,
F1000Research.
S. Nair,
J. Wain,
G. Dougan,
2008,
Antimicrobial Agents and Chemotherapy.
S. Nair,
J. Wain,
M. Quail,
2007,
Journal of bacteriology.
Matthias Reumann,
Thomas C. Conway,
Saurabh Garg,
2014,
Pathogens.
G. Dougan,
K. Holt,
W. Pomat,
2021,
medRxiv.
G. Dougan,
K. Holt,
C. Dolecek,
2020,
medRxiv.
Gad Abraham,
Michael Inouye,
Liam G. Fearnley,
2016,
Cell systems.
M. Inouye,
K. Holt,
P. Sly,
2019,
European Respiratory Journal.
K. Holt,
M. Levine,
R. Robins-Browne,
2017,
bioRxiv.
S. Nair,
J. Wain,
G. Dougan,
2011
.
G. Dougan,
K. Holt,
S. Kariuki,
2021,
bioRxiv.
Andrew J. Page,
Jacqueline A. Keane,
Christine J. Boinett,
2018,
Nature Communications.
K. Holt,
S. Baker,
C. Mason,
2016,
bioRxiv.
K. Holt,
S. Baker,
C. Mason,
2016,
bioRxiv.
G. Dougan,
K. Holt,
F. Weill,
2015,
Emerging infectious diseases.
J. Farrar,
G. Dougan,
K. Holt,
2013,
Journal of Clinical Microbiology.
J. Farrar,
G. Dougan,
K. Holt,
2013
.
J. Farrar,
G. Dougan,
K. Holt,
2010,
BMC infectious diseases.
Y. Teo,
G. Dougan,
K. Holt,
2010,
Journal of Clinical Microbiology.
I. Goodhead,
G. Dougan,
S. Whitehead,
2007,
Molecular microbiology.
T. Speed,
K. Holt,
R. Teasdale,
2012,
PloS one.
Mark B. Schultz,
K. Holt,
B. Howden,
2015,
mBio.
J. Farrar,
G. Dougan,
K. Holt,
2010,
PloS one.
Julian Parkhill,
Pham Van Minh,
D. W. Kim,
2013,
Proceedings of the National Academy of Sciences.
Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes
K. Holt,
R. Wick,
E. Heinz,
2018,
Journal of Clinical Microbiology.
Richard J. Goater,
Jacqueline A. Keane,
S. Nair,
2020,
Nature Communications.
K. Holt,
L. Judd,
K. Wyres,
2021,
Research in microbiology.
K. Holt,
L. Judd,
K. Wyres,
2021,
bioRxiv.
K. Holt,
S. Mcgloughlin,
R. Wick,
2021,
medRxiv.
K. Holt,
J. Hawkey,
L. Judd,
2022,
BMC Infectious Diseases.
Chaojie Yang,
K. Holt,
Y. Tong,
2018,
International journal of antimicrobial agents.
K. Holt,
S. Baker,
Hao Chung The,
2016,
The Journal of antimicrobial chemotherapy.
M. Inouye,
K. Holt,
Kristine E. Lee,
2020,
Journal of Allergy and Clinical Immunology.
K. Holt,
R. Hall,
C. Harmer,
2014,
Journal of Antimicrobial Chemotherapy.
K. Holt,
M. Kirk,
J. Kwong,
2019,
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
G. Dougan,
K. Holt,
C. Dolecek,
2021,
The Lancet. Global health.
David R Murdoch,
Kathryn E Holt,
Gordon Dougan,
2018,
bioRxiv.
J. Farrar,
K. Holt,
S. Baker,
2010,
BMC infectious diseases.
G. Dougan,
S. Whitehead,
K. Holt,
2009
.
K. Holt,
J. Hawkey,
M. Hamidian,
2019,
Microbial genomics.
K. Holt,
D. Pickard,
M. Hamidian,
2014,
The Journal of antimicrobial chemotherapy.
G. Dougan,
K. Holt,
S. Baker,
2017,
BMJ Open.
M. Inouye,
K. Holt,
P. Sly,
2019
.
Gastrointestinal carriage is a major reservoir of K. pneumoniae infection in intensive care patients
David J. Edwards,
K. Holt,
S. Mcgloughlin,
2016,
bioRxiv.
K. Holt,
F. Weill,
W. F. Fricke,
2019,
Microbial genomics.
Ryan R Wick,
Louise M Judd,
Kathryn E Holt,
2018,
bioRxiv.
Ryan R. Wick,
Kathryn E. Holt,
Louise M. Judd,
2018,
bioRxiv.
David J. Edwards,
G. Dougan,
K. Holt,
2016,
Nature Microbiology.
Michael Inouye,
Merci Kusel,
M. Inouye,
2017,
The Journal of allergy and clinical immunology.
M. Inouye,
A. Custovic,
S. Johnston,
2017,
bioRxiv.
Panagiotis Deloukas,
Mark Achtman,
Kenneth E. Sanderson,
2008,
Journal of Clinical Microbiology.
G. Dougan,
K. Holt,
D. Pickard,
2012,
PLoS neglected tropical diseases.
Y. Teo,
K. Holt,
S. Kariuki,
2010
.
K. Holt,
G. Hogg,
L. Hiley,
2013,
Genome Announcements.
Amy K. Cain,
Christine J. Boinett,
K. Holt,
2018,
Scientific Reports.
Stephen C. Watts,
K. Holt,
L. Judd,
2021,
mSystems.
Stephen C. Watts,
K. Holt,
L. Judd,
2020,
bioRxiv.
S. Nair,
J. Wain,
M. Quail,
2007
.
Jonathan M. Monk,
Stephen C. Watts,
K. Holt,
2023,
bioRxiv.
K. Holt,
R. Hall,
R. Moran,
2016,
Plasmid.
Michael Inouye,
Yik Ying Teo,
Guy Thwaites,
2018,
Nature Genetics.
K. Holt,
A. Sundsfjord,
Ø. Samuelsen,
2021,
The Journal of antimicrobial chemotherapy.
K. Holt,
J. Lawn,
A. Sesay,
2022,
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
K. Holt,
S. Bentley,
J. Lawn,
2020,
The Lancet. Microbe.
M. Inouye,
S. Johnston,
K. Holt,
2014,
bioRxiv.
K. Holt,
R. Wick,
L. Judd,
2021,
bioRxiv.
K. Holt,
N. Thomson,
S. Mcgloughlin,
2017,
bioRxiv.
G. Dougan,
K. Holt,
D. Pickard,
2013,
The Journal of antimicrobial chemotherapy.
K. Holt,
D. Pickard,
R. Hall,
2014,
The Journal of antimicrobial chemotherapy.
Sebastián Duchêne,
Kathryn E. Holt,
David J. Edwards,
2020,
bioRxiv.
K. Holt,
S. Bentley,
L. Hsu,
2017,
The Journal of antimicrobial chemotherapy.
K. Holt,
M. Hamidian,
R. Wick,
2019,
Microbiology Resource Announcements.
K. Holt,
D. Pickard,
J. Hawkey,
2015,
Genome Announcements.
K. Holt,
R. Hall,
M. Lam,
2022,
bioRxiv.
K. Holt,
R. Wick,
L. Judd,
2022,
Microbial genomics.
K. Holt,
R. Strugnell,
O. Wijburg,
2014,
Journal of bacteriology.
K. Holt,
D. Pickard,
M. Hamidian,
2015,
The Journal of antimicrobial chemotherapy.
G. Dougan,
K. Holt,
D. Pickard,
2013,
The Journal of antimicrobial chemotherapy.
K. Holt,
H. Wertheim,
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