J. Parkhill
发表
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
J. Wain,
I. Goodhead,
G. Dougan,
2008,
Nature Genetics.
J. Parkhill,
S. Bentley,
2004,
Annual review of genetics.
B. Barrell,
M. Quail,
K. James,
2001,
Nature.
B. Barrell,
M. Quail,
K. James,
2001
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J. Parkhill,
H. Flint,
A. Walker,
2011,
The ISME Journal.
Christopher P Austin,
Rolf Apweiler,
Tatsuhiko Tsunoda,
2009,
Nature.
Chris F. Taylor,
Allyson L. Lister,
Nikos,
2008,
Nature Biotechnology.
B. Barrell,
J. Sulston,
A. Krogh,
1998,
Nature.
P. Bork,
Junhua Li,
Huanming Yang,
2010,
Nature.
Heng Li,
Julian Parkhill,
Kathryn E. Holt,
2009,
Bioinform..
M. Pallen,
J. Parkhill,
B. Wren,
1999,
Molecular microbiology.
Julian Parkhill,
J. Parkhill,
A. Walker,
2013,
PloS one.
G. Dougan,
J. Parkhill,
S. Bentley,
2012,
PLoS pathogens.
Julian Parkhill,
Nicholas J Croucher,
Stephen D Bentley,
2012,
The New England journal of medicine.
Julian Parkhill,
J. Parkhill,
B. Wren,
2011,
Genome Biology.
Julian Parkhill,
Nicholas J. Croucher,
Simon R. Harris,
2011,
Nature.
Complete Genome Sequence of Uropathogenic Proteus mirabilis, a Master of both Adherence and Motility
Nicholas M. Luscombe,
Julian Parkhill,
Michael A. Quail,
2008,
Journal of bacteriology.
B. Birren,
T. Graves,
A. Wollam,
2009,
Science.
C. Lees,
J. Satsangi,
J. Parkhill,
2017
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Thomas M. Keane,
D. Turner,
M. Quail,
2009,
Nucleic acids research.
B. Barrell,
M. Pallen,
M. Quail,
2000,
Nature.
B. Barrell,
M. Quail,
K. James,
2000,
Nature.
B. Barrell,
M. Quail,
A. Bateman,
2002,
Nature.
W. Hanage,
J. Parkhill,
P. Marttinen,
2014,
PLoS genetics.
Georgios S. Vernikos,
J. Parkhill,
N. Thomson,
2007,
Genome Biology.
B. Barrell,
M. Pallen,
M. Quail,
2003,
Nucleic acids research.
B. Barrell,
J. Parkhill,
J. Hinds,
2001,
Genome research.
B. Barrell,
M. Quail,
L. Hurst,
2004,
Proceedings of the National Academy of Sciences of the United States of America.
A. Fraser,
M. Quail,
K. Mungall,
2004,
Proceedings of the National Academy of Sciences of the United States of America.
Samuel A. Assefa,
K. James,
G. Dougan,
2009,
PLoS genetics.
Jacqueline A. Keane,
Aidan J. Delaney,
J. Parkhill,
2014,
Nucleic acids research.
J. Parkhill,
G. Gerken,
A. Walker,
2015,
The Journal of Immunology.
Jacqueline A. Keane,
J. Parkhill,
N. D. Silva,
2015,
Genome Biology.
J. Parkhill,
S. Harris,
T. Otto,
2015,
bioRxiv.
R. Simons,
J. Parkhill,
D. Maskell,
2002,
Science.
B. Barrell,
M. Quail,
K. James,
2003,
Nature Genetics.
M. Lipsitch,
W. Hanage,
J. Parkhill,
2013,
Nature Genetics.
J. Burton,
M. Quail,
A. Tomasz,
2011,
Science.
K. Holt,
J. Parkhill,
S. Bentley,
2013,
Nature Genetics.
E. Willery,
C. Locht,
J. Tap,
2013,
Nature Genetics.
M. Blaser,
E. Denamur,
M. Aslett,
2016,
Nature Microbiology.
N. Fairweather,
S. Clare,
G. Dougan,
2009,
Infection and Immunity.
Julian Parkhill,
Stewart T. Cole,
Paul R. Wheeler,
2003,
Proceedings of the National Academy of Sciences of the United States of America.
Julian Parkhill,
Stewart T. Cole,
Stephen V. Gordon,
2007,
Proceedings of the National Academy of Sciences.
Julian Parkhill,
Torsten Seemann,
Brian White,
2008,
Genome research.
J. Corander,
J. Parkhill,
S. Bentley,
2019,
bioRxiv.
J. Corander,
J. Parkhill,
S. Bentley,
2020,
Genome Biology.
Jukka Corander,
Julian Parkhill,
Marco Galardini,
2020,
mBio.
B. Barrell,
M. Quail,
N. Holroyd,
2006,
PLoS genetics.
Jukka Corander,
David Goldblatt,
Paul Turner,
2014,
Nature Genetics.
Jukka Corander,
Antti Honkela,
Niko Välimäki,
2016,
Nature Communications.
Marcin J. Skwark,
Jukka Corander,
Paul Turner,
2016,
bioRxiv.
Paul Turner,
Julian Parkhill,
Nicholas J Loman,
2014,
BMC Biology.
L. Hoffman,
J. Parkhill,
A. Walker,
2014,
Journal of Clinical Microbiology.
Georgios S. Vernikos,
Julian Parkhill,
Konstantinos Mavromatis,
2009,
Genome Biology.
Rick Stevens,
Folker Meyer,
Victor Markowitz,
2014,
PLoS biology.
Giovanna Morelli,
Julian Parkhill,
Paul Keim,
2004,
Proceedings of the National Academy of Sciences of the United States of America.
Keith A. Jolley,
Julian Parkhill,
J. Parkhill,
2012,
Journal of Clinical Microbiology.
Julian Parkhill,
Martin Hunt,
Leonor Sánchez-Busó,
2017,
bioRxiv.
J. Parkhill,
S. Harris,
L. Rigouts,
2020,
bioRxiv.
Jukka Corander,
Stephen D. Bentley,
Julian Parkhill,
2016,
mBio.
Johannes Trück,
Julian Parkhill,
Gerton Lunter,
2015,
The Journal of Immunology.
John P. Overington,
Adhemar Zerlotini,
Anna V. Protasio,
2009,
Nature.
Julian Parkhill,
Paul Davis,
Michael A. Quail,
2004,
Journal of bacteriology.
Leopold Parts,
Julian Parkhill,
Gemma C. Langridge,
2009,
Genome research.
M. Simmonds,
T. Feltwell,
K. Brooks,
2001,
Nature.
Kim Rutherford,
Anders Krogh,
Stephen D. Bentley,
2001,
Nature.
Julian Parkhill,
Michael A Quail,
Alexandra Bignell,
2008,
Genome research.
J. Parkhill,
C. Kleanthous,
P. Taylor,
2020,
Infection and Immunity.
J. Parkhill,
C. Kleanthous,
Nathalie T. Reichmann,
2020
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S. Lory,
J. Parkhill,
J. Lipuma,
2005,
American journal of respiratory cell and molecular biology.
Georgios S. Vernikos,
Julian Parkhill,
J. Parkhill,
2008,
Genome research.
Julian Parkhill,
Michael A Quail,
Edward J Feil,
2010,
Science.
Keith A. Jolley,
Daniel Falush,
Stephen D. Bentley,
2013,
Proceedings of the National Academy of Sciences.
Eduardo P C Rocha,
Adam Baldwin,
Julian Parkhill,
2008,
Journal of bacteriology.
Keith A. Jolley,
Stephen D. Bentley,
Julian Parkhill,
2009,
PLoS pathogens.
Georgios S. Vernikos,
Julian Parkhill,
Michael A Quail,
2008,
Genome research.
Wenjun Liu,
Heping Zhang,
Ruifu Yang,
2015,
Nature Communications.
Julian Parkhill,
Simon R. Harris,
Martin Aslett,
2016,
Journal of Clinical Microbiology.
Karen P. Scott,
Julian Parkhill,
Paul Scott,
2015,
Microbiome.
H. Tettelin,
J. Parkhill,
M. Frosch,
2009,
Vaccine.
J. Parkhill,
S. Bentley,
K. Hardie,
2010,
BMC Genomics.
Julian Parkhill,
Claudio Donati,
David A. Relman,
2008,
Nature Reviews Microbiology.
Julian Parkhill,
Magnus Unemo,
Paul Scott,
2013,
Genome research.
Julian Parkhill,
Michael A Quail,
Stephen D Bentley,
2013,
The Lancet. Infectious Diseases.
J. Parkhill,
S. Bentley,
B. Spratt,
2016,
Genome research.
W Miller,
W. Miller,
S. Clifton,
2000,
Nucleic acids research.
J. M. Dow,
Lori A. S. Snyder,
Lisa C. Crossman,
2007,
The ISME Journal.
Jukka Corander,
Johan Pensar,
Julian Parkhill,
2019
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J. Parkhill,
J. A. Guerra-Assunção,
P. Fine,
2015,
eLife.
Lisa C. Crossman,
B. Barrell,
M. Quail,
2005,
Science.
Stephen D. Bentley,
Julian Parkhill,
Andrew Barron,
2010,
Microbiology.
M. Quail,
A. Goble,
D. Harris,
2006,
Journal of bacteriology.
J. Parkhill,
Yin Li,
F. Shanahan,
2006,
Proceedings of the National Academy of Sciences of the United States of America.
J. Parkhill,
D. Aanensen,
E. Feil,
2020,
Proceedings of the National Academy of Sciences.
T. Feltwell,
J. Parkhill,
Sebastian Bruchmann,
2020,
bioRxiv.
T. Feltwell,
J. Parkhill,
T. Downing,
2019,
bioRxiv.
J. Parkhill,
H. Flint,
A. Walker,
2016,
Environmental microbiology.
J. Corander,
J. Parkhill,
N. Thomson,
2020
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M. D. de Goffau,
J. Parkhill,
S. Bentley,
2020,
Scientific Reports.
Marcin J. Skwark,
J. Corander,
E. Aurell,
2016
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M. D. de Goffau,
J. Parkhill,
G. Frost,
2019,
Critical care medicine.
Amy K. Cain,
A. Westermann,
J. Vogel,
2020
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J. Parkhill,
D. Maskell,
A. Preston,
2004,
Nature Reviews Microbiology.
Julian Parkhill,
Martin Hunt,
Jacqueline A. Keane,
2015,
bioRxiv.
C. Fraser,
M. Kendall,
J. Parkhill,
2017,
PloS one.
N. Mulder,
J. Parkhill,
R. Wilkinson,
2017,
Molecular biology and evolution.
T. Clark,
A. Pain,
J. Parkhill,
2014,
Tuberculosis.
Amy K. Cain,
Christine J. Boinett,
Gemma C. Langridge,
2019,
Microbial genomics.
Julian Parkhill,
Stephen D Bentley,
Anita C Schürch,
2013,
BMC Infectious Diseases.
J. Parkhill,
S. Harris,
M. Holden,
2015,
bioRxiv.
T. Clark,
J. Parkhill,
J. A. Guerra-Assunção,
2014,
The Journal of infectious diseases.
J. Parkhill,
R. Zadoks,
S. Peacock,
2013,
The Journal of antimicrobial chemotherapy.
J. Parkhill,
E. Hammond,
C. Gregory,
1998,
FEBS letters.
Georgios S. Vernikos,
J. M. Dow,
Lisa C. Crossman,
2008,
Genome Biology.
Emergence of a Globally Dominant IncHI1 Plasmid Type Associated with Multiple Drug Resistant Typhoid
S. Nair,
J. Wain,
G. Dougan,
2011,
PLoS neglected tropical diseases.
T. Feltwell,
J. Parkhill,
T. Downing,
2019,
mSphere.
B. Pearson,
J. Parkhill,
S. Sheppard,
2019,
bioRxiv.
J. Parkhill,
J. Milner,
R. Grinter,
2019,
bioRxiv.
J. Parkhill,
D. Maskell,
R. Chaudhuri,
2015,
Front. Microbiol..
J. Parkhill,
F. Kunst,
A. Givaudan,
2004,
Journal of bacteriology.
David Goldblatt,
Paul Turner,
Julian Parkhill,
2017,
bioRxiv.
P. Lemey,
J. Parkhill,
S. Cauchemez,
2022,
Science Translational Medicine.
Nicola K. Petty,
Lisa C. Crossman,
M. Pallen,
2010,
Journal of bacteriology.
T G Harrison,
C. Buchrieser,
J. Parkhill,
2017,
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
M. Quail,
J. Parkhill,
S. Bentley,
2013,
Emerging infectious diseases.
N. Brown,
J. Parkhill,
D. Rouch,
1995,
Journal of Industrial Microbiology.
Integration of tools and resources for display and analysis of genomic data for protozoan parasites.
B. Barrell,
V. Wood,
A. Ivens,
2005,
International journal for parasitology.
J. Parkhill,
S. Bentley,
S. Earle,
2012,
Microbiology.
J. Parkhill,
S. Bentley,
N. Croucher,
2012,
The Journal of infectious diseases.
G. Dougan,
J. Parkhill,
S. Baker,
2014,
Emerging infectious diseases.
J. Parkhill,
R. Bruton,
P. Barral,
2007
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J. Parkhill,
S. Bentley,
Erik Hjerde,
2014,
The Journal of antimicrobial chemotherapy.
J. Corander,
J. Parkhill,
S. Bentley,
2018,
bioRxiv.
J. Parkhill,
N. Thomson,
S. Bentley,
2003,
Nature Reviews Microbiology.
Julian Parkhill,
Roland Grunow,
Christiane Bouchier,
2017,
Science.
M. Quail,
D. Harris,
L. Murphy,
2002,
Applied and Environmental Microbiology.
J. Parkhill,
J. Crosby,
E. Mahenthiralingam,
2017,
Journal of bacteriology.
J. Parkhill,
J. Bryant,
R. Floto,
2013,
The Lancet.
Lisa C. Crossman,
J. Parkhill,
M. Sebaihia,
2003,
Nature Reviews Microbiology.
J. Corander,
J. Farrar,
J. Parkhill,
2015,
Nature Communications.
J. Parkhill,
P. Beckert,
S. Niemann,
2017,
Antimicrobial Agents and Chemotherapy.
J. Parkhill,
K. Malcolm,
J. Nick,
2020,
ACS infectious diseases.
J. Parkhill,
V. Sintchenko,
B. Javid,
2016,
Antimicrobial Agents and Chemotherapy.
T. Clark,
J. Parkhill,
S. Tongsima,
2019,
Scientific Reports.
Lisa C. Crossman,
M. Quail,
K. Brooks,
2012,
The ISME Journal.
J. Parkhill,
M. Holden,
A. Efstratiou,
2020,
International journal of molecular sciences.
Gemma C. Langridge,
J. Parkhill,
A. Preston,
2020,
Microbial genomics.
L. Hurst,
J. Parkhill,
S. Harris,
2015,
The Journal of infectious diseases.
C. Boesch,
J. Parkhill,
S. Niemann,
2013,
Emerging infectious diseases.
J. Parkhill,
P. Lecane,
S. Roberts,
1997,
Journal of virology.
G. Smith,
M. Martí-Renom,
J. Parkhill,
2013,
The New England journal of medicine.
D. Falush,
J. Corander,
L. Hurst,
2022,
bioRxiv.
J. Parkhill,
A. Walker,
Yin Li,
2012,
Molecular microbiology.
J. Parkhill,
R. ffrench-Constant,
N. Thomson,
2008,
Proceedings of the National Academy of Sciences.
J. Parkhill,
S. Peacock,
C. Köser,
2016
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J. Parkhill,
S. Peacock,
C. Köser,
2016,
Antimicrobial Agents and Chemotherapy.
J. Corander,
A. Honkela,
J. Parkhill,
2016
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B. Barrell,
A. Bignell,
M. Quail,
2009,
BMC Genomics.
J. Parkhill,
S. Bentley,
A. van der Ende,
2016,
bioRxiv.
J. Parkhill,
M. Sebaihia,
N. Thomson,
2002
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J. Parkhill,
S. Peacock,
Danesh Moradigaravand,
2017,
mBio.
J. Parkhill,
L. Sánchez-Busó,
S. Harris,
2017,
Scientific Reports.
J. Parkhill,
L. Sánchez-Busó,
S. Harris,
2017,
bioRxiv.
T. Clark,
J. Parkhill,
J. A. Guerra-Assunção,
2018,
BMC Genomics.
J. Corander,
M. D. de Goffau,
J. Parkhill,
2018,
mBio.
J. Parkhill,
S. Bentley,
N. Croucher,
2012,
Genome Biology.
J. Parkhill,
G. Gerken,
A. Walker,
2015
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Christine J. Boinett,
J. Parkhill,
M. Murphy,
2018,
mBio.
J. Parkhill,
S. Peacock,
N. Brown,
2020,
The Lancet. Microbe.
J. Parkhill,
P. Rhodes,
S. Peacock,
2020,
The Journal of antimicrobial chemotherapy.
J. Parkhill,
S. Peacock,
E. Bragin,
2020,
Microbial genomics.
J. Parkhill,
P. Rhodes,
S. Peacock,
2019,
Journal of Clinical Microbiology.
J. Parkhill,
S. Peacock,
N. Brown,
2019,
The Journal of antimicrobial chemotherapy.
J. Parkhill,
N. Wheeler,
D. Aanensen,
2019,
bioRxiv.
J. Parkhill,
S. Peacock,
A. Kearns,
2019,
Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
J. Betley,
Louise J. Fraser,
P. Kokko-Gonzales,
2019,
Journal of Clinical Microbiology.
C. Churcher,
J. Parkhill,
S. Peacock,
2018,
Microbial genomics.
J. Parkhill,
S. Peacock,
N. F. Brown,
2017
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J. Parkhill,
S. Peacock,
N. Brown,
2017,
Genome Medicine.
J. Parkhill,
S. Peacock,
N. Brown,
2017,
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
J. Parkhill,
S. Bentley,
S. Harris,
2019,
mBio.
J. Parkhill,
B. D. de Jong,
S. Niemann,
2017,
Antimicrobial Agents and Chemotherapy.
J. Parkhill,
S. Bentley,
S. Harris,
2017,
bioRxiv.
J. Parkhill,
N. Woodford,
K. Hopkins,
2017,
Microbial genomics.
G. Dougan,
J. Parkhill,
S. Harris,
2019,
Communications Biology.
Judith,
Terese,
L. Morawska,
2016
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J. Parkhill,
S. Harris,
I. Podglajen,
2017,
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
G. Smith,
J. Parkhill,
S. Bentley,
2013,
BMJ Open.
J. Parkhill,
N. Thomson,
G. Thomas,
2009,
BMC Genomics.
J. Parkhill,
N. Thomson,
J. Nataro,
2006,
Molecular microbiology.
Lisa C. Crossman,
J. Parkhill,
A. Cerdeño-Tárraga,
2003,
Trends in microbiology.
J. Parkhill,
M. Sebaihia,
S. Bentley,
2002,
Trends in microbiology.
J. Parkhill,
F. Weill,
S. Baker,
2015,
eLife.
D. Charnock-Jones,
M. D. de Goffau,
U. Sovio,
2019,
Nature.
Mihai Pop,
Julian Parkhill,
Hector Corrada Bravo,
2014,
Genome Biology.
Amy K. Cain,
Christine J. Boinett,
K. Holt,
2018,
Scientific Reports.
J. Parkhill,
2016,
Nature Reviews Microbiology.
Thomas M. Keane,
Nicola K. Petty,
S. Nair,
2011,
PLoS pathogens.
Amy K. Cain,
Christine J. Boinett,
Nicholas S. Gleadall,
2019,
Genome Biology.
J. Parkhill,
S. Sriskandan,
T. Lamagni,
2019,
The Lancet. Infectious diseases.
J. Parkhill,
S. Bentley,
Craig Corton,
2014
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W. Hanage,
J. Parkhill,
S. Bentley,
2014,
Genome biology and evolution.
John A. Clark,
M. D. de Goffau,
J. Parkhill,
2021,
Scientific Reports.
J. Parkhill,
G. Frost,
N. Klein,
2013
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M. Quail,
J. Parkhill,
S. Bentley,
2009
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J. Parkhill,
M. Holden,
2001,
Trends in microbiology.
Lisa C. Crossman,
J. Parkhill,
M. Sebaihia,
2003,
Trends in microbiology.
G. Dougan,
J. Parkhill,
S. Bentley,
2019,
Nature Genetics.
J. Parkhill,
I. Feavers,
C. Bayliss,
2013,
PloS one.
J. Parkhill,
R. Rance,
A. West,
2010,
Journal of bacteriology.
Andries J. van Tonder,
J. Parkhill,
S. Bentley,
2011,
FEMS microbiology letters.
E. Willery,
C. Locht,
J. Tap,
2020
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J. Parkhill,
M. Tunney,
M. Ennis,
2016,
Thorax.
J. Parkhill,
S. Peacock,
C. Köser,
2016
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Lisa C. Crossman,
A. Pain,
J. Parkhill,
2004,
Nature Reviews Microbiology.
J. Parkhill,
S. Peacock,
E. Torok,
2017
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J. Parkhill,
S. Peacock,
N. Brown,
2016,
The Journal of infectious diseases.
M. Quail,
J. Parkhill,
S. Harris,
2014,
The Journal of antimicrobial chemotherapy.
Evelien M. Adriaenssens,
J. Parkhill,
D. Maskell,
2022,
Microbial Genomics.
J. Parkhill,
C. Proby,
A. Irvine,
2018,
The British journal of dermatology.
J. Parkhill,
C. Proby,
A. Irvine,
2018
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K. Holt,
J. Parkhill,
F. Weill,
2012,
Journal of Clinical Microbiology.
J. Parkhill,
S. Peacock,
M. Holmes,
2013,
Journal of Clinical Microbiology.
Richard J. Goater,
J. Parkhill,
S. Harris,
2021,
Microbial genomics.
Jukka Corander,
Julian Parkhill,
Nicholas J. Croucher,
2019,
mBio.
Stephen D. Bentley,
Julian Parkhill,
David M. Aanensen,
2016,
mBio.
Marcin J. Skwark,
T. Blundell,
J. Parkhill,
2022,
Nature Microbiology.
J. Parkhill,
D. Lye,
L. Hsu,
2017,
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
Christine J. Boinett,
Gemma C. Langridge,
J. Parkhill,
2015,
Genome Announcements.
L. Hurst,
J. Parkhill,
S. Harris,
2015
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Julian Parkhill,
Rosanna W. Peeling,
Simon R. Harris,
2012,
Nature Genetics.
J. Parkhill,
S. Harris,
G. Pluschke,
2016,
PLoS Neglected Tropical Diseases.
D. Falush,
J. Parkhill,
F. Weill,
2019,
bioRxiv.
Stephen D. Bentley,
Julian Parkhill,
Philip M. Giffard,
2011,
Genome biology and evolution.
J. Parkhill,
S. Harris,
S. Peacock,
2015,
International journal of antimicrobial agents.
J. Corander,
J. Parkhill,
S. Bentley,
2015,
International journal of systematic and evolutionary microbiology.
J. Parkhill,
M. Browna,
atthew J. Ellingtona,
2015
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J. Parkhill,
2022,
Engineering.
J. Parkhill,
R. Zadoks,
S. Peacock,
2012,
Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
J. Parkhill,
S. Harris,
S. Gagneux,
2016,
International journal of mycobacteriology.
J. Wain,
K. James,
G. Dougan,
2003,
Antimicrobial Agents and Chemotherapy.
J. Parkhill,
R. Floto,
A. Grant,
2022,
BMC Microbiology.
N. Luscombe,
M. Quail,
K. Mungall,
2008
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Amy K. Cain,
I. Paulsen,
J. Parkhill,
2021
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Amy K. Cain,
Christine J. Boinett,
Karl A. Hassan,
2016,
mBio.
C. Quince,
J. Parkhill,
A. Walker,
2022,
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