Dongwon Lee

发表

A method to predict the impact of regulatory variants from DNA sequence

Benjamin J. Strober, Michael A. Beer, A. McCallion, 2015, Nature Genetics.

Discriminative prediction of mammalian enhancers from DNA sequence.

Michael A. Beer, R. Karchin, M. Beer, 2011, Genome research.

A comparative encyclopedia of DNA elements in the mouse genome

Shane J. Neph, Dmitri D. Pervouchine, Matthew D. Rasmussen, 2014, Nature.

Rare coding variants associated with blood pressure variation in 15 914 individuals of African ancestry

M. Fornage, C. Rotimi, A. Chakravarti, 2017, Journal of hypertension.

Design of a synthetic yeast genome

Yizhi Cai, Joel S. Bader, Jef D. Boeke, 2017, Science.

Analysis of putative cis-regulatory elements regulating blood pressure variation

E. Boerwinkle, N. Risch, P. Kwok, 2019, bioRxiv.

Analysis of putative cis-regulatory elements regulating blood pressure variation

E. Boerwinkle, N. Risch, P. Kwok, 2019, bioRxiv.

Recent Advances in Anti-inflammatory Strategies for Implantable Biosensors and Medical Implants

Dongwon Lee, Jungmok Seo, Kijun Park, 2020, BioChip Journal.

Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes

Michael A. Beer, Christopher Fletez-Brant, Michael A Beer, 2012, Genome research.

a predictive regulatory sequence vocabulary in melanocytes Integration of ChIP-seq and machine learning reveals enhancers Material Supplemental

Michael A. Beer, Seneca L. Bessling, A. McCallion, 2012 .

gkmSVM: an R package for gapped-kmer SVM

Morteza Mohammad Noori, Narges Ghareghani, Mahmoud Ghandi, 2016, Bioinform..

Sequence-based correction of barcode bias in massively parallel reporter assays

Michael A. Beer, A. Chakravarti, M. Beer, 2021, bioRxiv.

Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features

Morteza Mohammad Noori, Mahmoud Ghandi, Dongwon Lee, 2014, PLoS Comput. Biol..

Quality assessment and refinement of chromatin accessibility data using a sequence-based predictive model

A. Chakravarti, Dongwon Lee, M. Sampson, 2022, bioRxiv.

Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis

Ross C Hardison, Michael A. Beer, Michael A Beer, 2014, Genome research.

Enhancer Variants Synergistically Drive Dysfunction of a Gene Regulatory Network In Hirschsprung Disease

Len A. Pennacchio, Aravinda Chakravarti, Stacey Gabriel, 2016, Cell.

Early Correction of N-Methyl-D-Aspartate Receptor Function Improves Autistic-like Social Behaviors in Adult Shank2 −/− Mice

Yeonseung Chung, B. Kaang, Dongwon Lee, 2019, Biological Psychiatry.

Cerebellar Shank2 Regulates Excitatory Synapse Density, Motor Coordination, and Specific Repetitive and Anxiety-Like Behaviors

Dongwon Lee, Y. Bae, Eunjoon Kim, 2016, The Journal of Neuroscience.

LS-GKM: a new gkm-SVM for large-scale datasets

Dongwon Lee, Dongwon Lee, 2016, Bioinform..

Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

A. Chakravarti, G. Crawford, M. Halushka, 2018, Genome research.

Rare coding TTN variants are associated with electrocardiographic QT interval in the general population

E. Boerwinkle, A. Chakravarti, D. Arking, 2016, Scientific Reports.

Multiple SCN5A variant enhancers modulate its cardiac gene expression and the QT interval

E. Boerwinkle, A. Chakravarti, D. Arking, 2019, Proceedings of the National Academy of Sciences.

Raf Kinase Inhibitory Protein is Required for Cerebellar Long-Term Synaptic Depression by Mediating PKC-Dependent MAPK Activation

Dongwon Lee, Shinya Kuroda, Bokyoung Lee, 2012, The Journal of Neuroscience.

Functional and Physical Interaction of Diacylglycerol Kinase ζ with Protein Kinase Cα Is Required for Cerebellar Long-Term Depression

Dongwon Lee, Eunjoon Kim, Keiko Tanaka-Yamamoto, 2015, The Journal of Neuroscience.

Diacylglycerol Kinases in the Coordination of Synaptic Plasticity

Dongwon Lee, Eunjoon Kim, Keiko Tanaka-Yamamoto, 2016, Front. Cell Dev. Biol..

kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets

Dongwon Lee, Michael A. Beer, Christopher Fletez-Brant, 2013, Nucleic Acids Res..

Testing the Ret and Sema3d genetic interaction in mouse enteric nervous system development

A. Chakravarti, Dongwon Lee, S. Chatterjee, 2017, Human molecular genetics.

Tissue-specific and tissue-agnostic effects of genome sequence variation modulating blood pressure

A. Chakravarti, Dongwon Lee, S. Ganesh, 2022, bioRxiv.

Cardiomyocytes have mosaic patterns of protein expression.

A. Chakravarti, D. Arking, M. Halushka, 2018, Cardiovascular pathology : the official journal of the Society for Cardiovascular Pathology.

Advances in Computational Identification and Modeling of DNA Regulatory Elements in the Human Genome

Michael A. Beer, Dongwon Lee, 2013 .

Discriminative prediction of mammalian enhancers from DNA sequence.

Michael A. Beer, R. Karchin, Dongwon Lee, 2011, Genome research.

A comparative encyclopedia of DNA elements in the mouse genome

Mukul S. Bansal, Shane J. Neph, Dmitri D. Pervouchine, 2014, Nature.

A Lubricated Nonimmunogenic Neural Probe for Acute Insertion Trauma Minimization and Long‐Term Signal Recording

Il-Joo Cho, Dongwon Lee, Jungmok Seo, 2021, Advanced science.