B. Dalrymple

发表

The Transcriptional Landscape of the Mammalian Genome

S. Salzberg, C. Bult, S. Batalov, 2005, Science.

The sheep genome illuminates biology of the rumen and lipid metabolism

Bronwen L. Aken, S. Searle, P. Flicek, 2014, Science.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

Hans H. Cheng, S. Foissac, C. Elsik, 2015, Genome Biology.

A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach.

Robert J. Moore, B. Dalrymple, Evgeny A. Glazov, 2008, Genome research.

Origin, evolution, and biological role of miRNA cluster in DLK-DIO3 genomic region in placental mammals.

Sean McWilliam, B. Dalrymple, S. McWilliam, 2008, Molecular biology and evolution.

Morphogenetic expression of Bacteroides nodosus fimbriae in Pseudomonas aeruginosa

J. Mattick, B. Dalrymple, M. Bills, 1987, Journal of bacteriology.

Organization of the fimbrial gene region of Bacteroides nodosus: class I and class II strains

J. Mattick, B. Dalrymple, P. Cox, 1991, Molecular microbiology.

Molecular Biology of the Fimbriae of Dichelobacter (Previously Bacteroides) nodosus

J. Mattick, B. Dalrymple, P. Cox, 1993 .

A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds

B. Dalrymple, S. McWilliam, M. P. Heaton, 2009, PloS one.

An interactive bovine in silico SNP database (IBISS)

B. Dalrymple, S. McWilliam, W. Barris, 2004, Mammalian Genome.

A gene coexpression network for bovine skeletal muscle inferred from microarray data.

Antonio Reverter, Siok-Hwee Tan, Wes Barris, 2006, Physiological genomics.

Approaches taken, progress made, and enhanced utility of long read-based goat, swine, cattle and sheep reference genomes

Timothy P. L. Smith, S. Koren, A. Phillippy, 2016 .

Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues

B. Dalrymple, V. H. Oddy, A. Archibald, 2016, PeerJ.

Beyond differential expression: the quest for causal mutations and effector molecules

Antonio Reverter, Nicholas J Hudson, B. Dalrymple, 2012, BMC Genomics.

Inferring the in vivo cellular program of developing bovine skeletal muscle from expression data.

R. Lyons, B. Dalrymple, A. Reverter, 2013, Gene expression patterns : GEP.

Ashley J. Waardenberg, T. Vuocolo, B. Dalrymple, 2012, BMC Research Notes.

Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle

Antonio Reverter, Shivashankar H. Nagaraj, Quan Gu, 2011, BMC Genomics.

Porcine Tissue-Specific Regulatory Networks Derived from Meta-Analysis of the Transcriptome

B. Dalrymple, A. Reverter, Y. Ramayo-Caldas, 2012, PloS one.

A radiation hybrid comparative map of ovine chromosome 1 aligned to the virtual sheep genome.

B. Dalrymple, J. Maddox, N. Cockett, 2009, Animal genetics.

A physical map of the bovine genome

Steven J. M. Jones, Timothy P. L. Smith, G. L. Bennett, 2007, Genome Biology.

Nucleotide sequence of the prokaryotic mobile genetic element IS30.

B. Dalrymple, P. Caspers, W. Arber, 1984, The EMBO journal.

Promotion of RNA transcription on the insertion element IS30 of E. coli K12.

B. Dalrymple, W. Arber, 1985, The EMBO journal.

The Neocallimastix patriciarum cellulase, CelD, contains three almost identical catalytic domains with high specific activities on Avicel

B. Dalrymple, G. Xue, K. Gobius, 1999 .

Distribution and Evolution of the Xylanase GenesxynA and xynB and Their Homologues in Strains ofButyrivibrio fibrisolvens

B. Dalrymple, G. Xue, K. Gobius, 1999, Applied and Environmental Microbiology.

articleTranscription profiling provides insights into gene pathways involved in horn and scurs development in cattle

B. Dalrymple, A. Reverter, W. Barris, 2010 .

A high-resolution comparative radiation hybrid map of ovine chromosomal regions that are homologous to human chromosome 6 (HSA6).

B. Dalrymple, J. Maddox, N. Cockett, 2008, Animal genetics.

Dissection of beef quality phenotypes using a myogenin network-anchored systems biology approach

B. Dalrymple, S. McWilliam, A. Reverter, 2008 .

The effect of combination treatment with trenbolone acetate and estradiol-17β on skeletal muscle expression and plasma concentrations of oxytocin in sheep.

B. Dalrymple, R. Pearson, K. Kongsuwan, 2012, Domestic animal endocrinology.

Longitudinal muscle gene expression patterns associated with differential intramuscular fat in cattle.

B. Dalrymple, A. Reverter, P. Greenwood, 2015, Animal : an international journal of animal bioscience.

Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle.

Shivashankar H. Nagaraj, B. Dalrymple, A. Reverter, 2011, Physiological genomics.

Using comparative genomics to reorder the human genome sequence into a virtual sheep genome

E. Kirkness, Tim P. L. Smith, Shaying Zhao, 2007, Genome Biology.

Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data

B. Dalrymple, A. Reverter, J. Kijas, 2017, bioRxiv.

Molecular Cytogenetics and Gene Mapping in Sheep (Ovis aries, 2n = 54)

B. Dalrymple, J. Maddox, F. Nicholas, 2009, Cytogenetic and Genome Research.

The application of rumen biotechnology to improve the nutritive value of fibrous feedstuffs: Pre- and post-ingestion

B. Dalrymple, R. Mackie, G. Xue, 1999 .

Transformation and expression of an anaerobic fungal xylanase in several strains of the rumen bacterium Butyrivibrio fibrisolvens

B. Dalrymple, G. Xue, C. McSweeney, 2002, Journal of applied microbiology.

RNF14 is a regulator of mitochondrial and immune function in muscle

Wei Chen, Antonio Reverter, Brian P. Dalrymple, 2014, BMC Systems Biology.

Molecular variation and diversity in candidate vaccine antigens from Babesia.

B. Dalrymple, 1993, Acta tropica.

Harnessing the bovine genome sequence for the Australian cattle and sheep industries

B. Dalrymple, 2005 .

Binding inhibitors of the bacterial sliding clamp by design.

B. Dalrymple, D. Winkler, N. Dixon, 2011, Journal of medicinal chemistry.

Cloning and characterisation of members of a family of Babesia bigemina antigen genes containing repeated sequences.

J. Peters, B. Dalrymple, I. G. Wright, 1992, Molecular and biochemical parasitology.

Evidence for two genetically distinct DNA primase activities specified by plasmids of the B and I incompatibility groups

B. Dalrymple, P. Williams, G. Boulnois, 1982, Journal of bacteriology.

Distribution and evolution of the xylanase genes xynA and xynB and their homologues in strains of Butyrivibrio fibrisolvens.

B. Dalrymple, G. Xue, K. Gobius, 1999, Applied and environmental microbiology.

The development of a recombinant Babesia vaccine.

J. Peters, B. Dalrymple, R. Casu, 1992, Veterinary parasitology.

TRIENNIAL GROWTH AND DEVELOPMENT SYMPOSIUM: Intramuscular fat deposition in ruminants and pigs: A transcriptomics perspective.

B. Dalrymple, B. Guo, Brian P. Dalrymple, 2017, Journal of animal science.

Intramuscular fat deposition in ruminants and pigs : A transcriptomics perspective 1

B. Dalrymple, B. Guo, 2017 .

Transcriptome analysis of cattle muscle identifies potential markers for skeletal muscle growth rate and major cell types

Guang-hong Zhou, B. Dalrymple, P. Greenwood, 2015, BMC Genomics.

Gene expression phenotypes for lipid metabolism and intramuscular fat in skeletal muscle of cattle.

B. Dalrymple, A. Reverter, P. Greenwood, 2013, Journal of animal science.

Cloning and characterisation of cDNA clones encoding two Babesia bovis proteins with homologous amino- and carboxy-terminal domains.

J. Peters, B. Dalrymple, B. Goodger, 1993, Molecular and biochemical parasitology.

PCR methods for the discrimination of Babesia bovis isolates.

B. Dalrymple, P. Jeston, A. Lew, 1997, Veterinary parasitology.

Analysis of the composition of samples of Babesia bovis and the influence of different environmental conditions on genetically distinct subpopulations.

B. Dalrymple, I. G. Wright, W. Jorgensen, 1992, International journal for parasitology.

High osmolarity improves the electro-transformation efficiency of the gram-positive bacteria Bacillus subtilis and Bacillus licheniformis

B. Dalrymple, G. Xue, Jennifer S. Johnson, 1999 .

Transcription of the fimbrial subunit gene and an associated transfer RNA gene of Pseudomonas aeruginosa.

J. Mattick, B. Dalrymple, M. Hobbs, 1988, Gene.

A universal protein–protein interaction motif in the eubacterial DNA replication and repair systems

B. Dalrymple, N. Dixon, K. Kongsuwan, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Inferring the Transcriptional Landscape of Bovine Skeletal Muscle by Integrating Co-Expression Networks

Antonio Reverter, Paul L. Greenwood, Nicholas J. Hudson, 2009, PloS one.

A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation

Antonio Reverter, Brian P. Dalrymple, Nicholas J. Hudson, 2009, PLoS Comput. Biol..

Using muscle gene expression to estimate triacylglyceride deposition, and relative contributions of fatty acid synthesis and fatty acid import in intramuscular fat in cattle

B. Dalrymple, G. Zhou, B. Guo, 2014 .

Manipulation of Rumen Function by the Inoculation of Novel Microorganisms

B. Dalrymple, C. McSweeney, 1998 .

Modification of the substrate specificity of porcine pepsin for the enzymatic production of bovine hide gelatin

B. Dalrymple, C. Galea, R. Kuypers, 2000, Protein science : a publication of the Protein Society.

Ribosomal DNA sequence comparison of Babesia and Theileria.

B. Dalrymple, A. Johnson, J. Ellis, 1992, Molecular and biochemical parasitology.

16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep.

B. Dalrymple, R. Mackie, C. McSweeney, 1999, Microbiology.

Gene network analysis identifies rumen epithelial cell proliferation, differentiation and metabolic pathways perturbed by diet and correlated with methane production

B. Dalrymple, V. H. Oddy, J. McEwan, 2016, Scientific Reports.

Across-Experiment Transcriptomics of Sheep Rumen Identifies Expression of Lipid/Oxo-Acid Metabolism and Muscle Cell Junction Genes Associated With Variation in Methane-Related Phenotypes

B. Dalrymple, V. H. Oddy, J. McEwan, 2018, Front. Genet..

Modes of genetic adaptations underlying functional innovations in the rumen

B. Dalrymple, Bin Wei, J. Hua, 2020, Science China Life Sciences.

Modes of genetic adaptations underlying functional innovations in the rumen

B. Dalrymple, Yulin Chen, Bin Wei, 2020, Science China Life Sciences.

Improvement of expression and secretion of a fungal xylanase in the rumen bacterium Butyrivibrio fibrisolvens OB156 by manipulation of promoter and signal sequences.

B. Dalrymple, G. Xue, K. Bransgrove, 1997, Journal of biotechnology.

Gene sequences and comparison of the fimbrial subunits representative of Bacteroides nodosus serotypes A to I: class I and class II strains

J. Mattick, B. Dalrymple, P. Cox, 1991, Molecular microbiology.

Biochemical and molecular characterization of serine proteases from larvae of Chrysomya bezziana, the Old World Screwworm fly.

T. Vuocolo, B. Dalrymple, S. Hamilton, 2001, Insect biochemistry and molecular biology.

Conservation of the regulatory subunit for the Clp ATP-dependent protease in prokaryotes and eukaryotes.

J. Mattick, S. Gottesman, B. Dalrymple, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Expression of a Butyrivibrio fibrisolvens E14 gene (cinB) encoding an enzyme with cinnamoyl ester hydrolase activity is negatively regulated by the product of an adjacent gene (cinR).

B. Dalrymple, Y. Swadling, 1997, Microbiology.

Cloning of a gene encoding cinnamoyl ester hydrolase from the ruminal bacterium Butyrivibrio fibrisolvens E14 by a novel method.

B. Dalrymple, G. Xue, D. Cybinski, 1996, FEMS microbiology letters.

A comparison of transcriptomic patterns measured in the skin of Chinese fine and coarse wool sheep breeds

T. Vuocolo, B. Dalrymple, A. Ingham, 2017, Scientific Reports.

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data

Brian P. Dalrymple, Antonio Reverter, Nicholas J. Hudson, 2010, Bioinform..

Transcriptomics of Meat Quality

B. Guo, B. P. Dalrymple, B. Dalrymple, 2017 .

Three Neocallimastix patriciarum esterases associated with the degradation of complex polysaccharides are members of a new family of hydrolases.

B. Dalrymple, G. Xue, C. McSweeney, 1997, Microbiology.

An acetylxylan esterase and a xylanase expressed from genes cloned from the ruminal fungus Neocallimastix patriciarum act synergistically to degrade acetylated xylans

B. P. Dalrymple, J. B. Lowry, B. Dalrymple, 1999, Applied Microbiology and Biotechnology.

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

Bertrand Servin, Simon Boitard, John McEwan, 2012, PLoS biology.

Tracing the origin of a new organ by inferring the genetic basis of rumen evolution

B. Dalrymple, Yulin Chen, Bin Wei, 2020, bioRxiv.

A multiway analysis for identifying high integrity bovine BACs

B. Dalrymple, S. McWilliam, R. Brauning, 2009, BMC Genomics.

Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes

Antonio Reverter, Brian P. Dalrymple, Aaron Ingham, 2008, BioData Mining.

Characterisation and application of a bovine U6 promoter for expression of short hairpin RNAs

B. Dalrymple, S. McWilliam, L. Lambeth, 2005, BMC biotechnology.

Phosphoinositide 3-Kinase (PI3K(p110α)) Directly Regulates Key Components of the Z-disc and Cardiac Structure*

Ashley J. Waardenberg, C. Wells, B. Dalrymple, 2011, The Journal of Biological Chemistry.

Validation of alternative methods of data normalization in gene co-expression studies

Antonio Reverter, Brian P. Dalrymple, Siok-Hwee Tan, 2005, Bioinform..

A gene expression estimator of intramuscular fat percentage for use in both cattle and sheep

B. Dalrymple, K. Kongsuwan, P. Greenwood, 2014, Journal of Animal Science and Biotechnology.

Babesia bovis, Babesia bigemina, Babesia canis, Babesia microti and Babesia rodhaini: comparison of ribosomal RNA gene organization.

B. Dalrymple, C. Dimmock, I. G. Wright, 1992, International journal for parasitology.

Towards an understanding of protein-protein interaction network heirarchies. Analysis of DnaN-binding peptide motifs in members of protein families interacting with the eubacterial processivity clamp, the subunit of DNA Polymerase III

Brian P. Dalrymple, Gene Wijffels, Philip J. Jennings, 2003, APBC.

Analysis of the complement and molecular evolution of tRNA genes in cow

B. Dalrymple, S. McWilliam, Evgeny A. Glazov, 2009, BMC Genomics.

A Divergent Artiodactyl MYADM-like Repeat Is Associated with Erythrocyte Traits and Weight of Lamb Weaned in Domestic Sheep

David R. Herndon, B. Dalrymple, S. White, 2013, PloS one.

Using Bacterial Artificial Chromosomes to Refine Genome Assemblies and to Build Virtual Genomes

B. Dalrymple, S. McWilliam, W. Barris, 2011 .

A rapid method for computationally inferring transcriptome coverage and microarray sensitivity

Brian P. Dalrymple, Toni Reverter-Gomez, S. M. McWilliam, 2005, Bioinform..

A comparative radiation hybrid map of sheep chromosome 10

B. Dalrymple, N. Cockett, C. Drögemüller, 2008, Cytogenetic and Genome Research.

Interaction of the Sliding Clamp β-Subunit and Hda, a DnaA-Related Protein

B. Dalrymple, K. Kongsuwan, G. Wijffels, 2004 .

Beta-globin gene evolution in the ruminants: evidence for an ancient origin of sheep haplotype B.

B. Dalrymple, J. Kijas, X. Wang, 2015, Animal genetics.

Novel rearrangements of IS30 carrying plasmids leading to the reactivation of gene expression

B. Dalrymple, 1987, Molecular and General Genetics MGG.

The sheep genome reference sequence: a work in progress.

C. Wade, T. Faraut, B. Dalrymple, 2010, Animal genetics.

Evolutionary relevance of genetic rearrangements involving plasmids.

B. Dalrymple, P. Caspers, C. Sengstag, 1985, Basic life sciences.

Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle

Ashley J. Waardenberg, Antonio Reverter, Christine A. Wells, 2008, BMC Systems Biology.

Detection of primase specified by IncB plasmid R864a

B. Dalrymple, P. Williams, 1982 .

Detection of Primase Specified by IncB Plasmid R864a

B. Dalrymple, P. Williams, 1982, Journal of bacteriology.

Plasmid encoded DNA primases

B. Dalrymple, 1982 .

IS30, a new insertion sequence of Escherichia coli K12

B. Dalrymple, P. Caspers, W. Arber, 2004, Molecular and General Genetics MGG.

Characterisation of a family of multi-copy genes encoding rhoptry protein homologues in Babesia bovis, Babesia ovis and Babesia canis.

J. Peters, B. Dalrymple, R. Casu, 1993, Molecular and biochemical parasitology.

Characterization of a cDNA clone from the haemoparasite Babesia bovis encoding a protein containing an "HMG-Box".

J. Peters, B. Dalrymple, 1992, Biochemical and biophysical research communications.

Sequence of a putative glutathione synthetase II gene and flanking regions from Anaplasma centrale.

J. Peters, B. Dalrymple, W. Jorgensen, 1992, Biochemical and Biophysical Research Communications - BBRC.

The Plasmid RK2 Replication Initiator Protein (TrfA) Binds to the Sliding Clamp β Subunit of DNA Polymerase III: Implication for the Toxicity of a Peptide Derived from the Amino-Terminal Portion of 33-Kilodalton TrfA

B. Dalrymple, K. Kongsuwan, P. Josh, 2006, Journal of bacteriology.

Beyond differential expression: the quest for causal mutations and effector molecules

B. Dalrymple, A. Reverter, N. Hudson, 2012, BMC Genomics.

Identification of L10e/L12e ribosomal protein genes in Babesia bovis.

J. Peters, B. Dalrymple, 1992, Nucleic acids research.

Identification of putative DnaN-binding motifs in plasmid replication initiation proteins.

B. Dalrymple, K. Kongsuwan, G. Wijffels, 2007, Plasmid.

Conservation of Eubacterial Replicases

Gene Wijffels, Brian Dalrymple, Kritaya Kongsuwan, 2005, IUBMB life.

An analysis of the organization and evolution of type 4 fimbrial (MePhe) subunit proteins

J. Mattick, B. Dalrymple, 2005, Journal of Molecular Evolution.

Eukaryotic Evolutionary Transitions Are Associated with Extreme Codon Bias in Functionally-Related Proteins

Yong-Sheng Ding, Antonio Reverter, Nicholas J. Hudson, 2011, PloS one.

Diversity and selection in Babesia bovis and their impact on vaccine use.

B. Dalrymple, 1992, Parasitology today.

Cloning and characterization of the rRNA genes and flanking regions from Babesia bovis: use of the genes as strain discriminating probes.

B. Dalrymple, Brian P. Dalrymple, 1990, Molecular and biochemical parasitology.

Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer

Antonio Reverter, Brian P. Dalrymple, Aaron Ingham, 2006, Bioinform..

Transcriptome analysis of cattle muscle identifies potential markers for skeletal muscle growth rate and major cell types

B. Dalrymple, P. Greenwood, Wangang Zhang, 2015, BMC Genomics.

Simultaneous identification of differential gene expression and connectivity in inflammation , adipogenesis and cancer

B. Dalrymple, A. Reverter, A. Ingham, 2006 .

Quality control of the sheep bacterial artificial chromosome library, CHORI-243

E. Kirkness, B. Dalrymple, A. Ratnakumar, 2010, BMC Research Notes.

Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle

Ashley J. Waardenberg, C. Wells, B. Dalrymple, 2008 .

to accelerate genome-to-phenome with the Functional Annotation of Genomes project.

D. Burt, S. Foissac, C. Elsik, 2015 .

A High-Resolution Radiation Hybrid Map of Sheep Chromosome X and Comparison with Human and Cattle

B. Dalrymple, N. Cockett, C. Gill, 2009, Cytogenetic and Genome Research.

Sequencing and expression of the aroA gene from Dichelobacter nodosus.

J. Mattick, B. Dalrymple, R. Alm, 1994, Gene.

Genes encoding threonine tRNAs with the anticodon CGU from Escherichia coli and Pseudomonas aeruginosa.

J. Mattick, B. Dalrymple, 1986, Biochemistry international.

Cellular localisation of the clamp protein during DNA replication.

B. Dalrymple, K. Kongsuwan, G. Wijffels, 2002, FEMS microbiology letters.

Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer

B. Dalrymple, A. Reverter, A. Ingham, 2006, Bioinform..

Bioinformatics Original Paper Simultaneous Identification of Differential Gene Expression and Connectivity in Inflammation, Adipogenesis and Cancer

B. Dalrymple, S. Lehnert, Yonghong Wang, 2022 .

Molecular Cytogenetics and Gene Mapping in Sheep (Ovis aries, 2n = 54)

B. Dalrymple, J. Maddox, F. Nicholas, 2009, Cytogenetic and Genome Research.

Recent advances in sheep genomics

B. Dalrymple, J. Maddox, F. Nicholas, 2010 .

Longitudinal muscle gene expression patterns associated with differential intramuscular fat in cattle.

B. Dalrymple, A. Reverter, P. Greenwood, 2015, Animal : an international journal of animal bioscience.

Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle.

Shivashankar H. Nagaraj, B. Dalrymple, A. Reverter, 2011, Physiological genomics.

Open Access Research Article Transcription Profiling Provides Insights into Gene Pathways Involved in Horn and Scurs Development in Cattle

B. Dalrymple, A. Reverter, W. Barris, 2022 .

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B. Dalrymple, A. Reverter, W. Barris, 2004 .