J. Sáez-Rodríguez
发表
E. Gilles,
S. Klamt,
J. Sáez-Rodríguez,
2008,
IET systems biology.
D. Lauffenburger,
P. Sorger,
S. Klamt,
2009,
Molecular systems biology.
N. D. Clarke,
P. Sorger,
D. Marbach,
2010,
PloS one.
Julio Saez-Rodriguez,
Peter K. Sorger,
Douglas A. Lauffenburger,
2012,
BMC Systems Biology.
D. Lauffenburger,
P. Sorger,
J. Sáez-Rodríguez,
2010,
Molecular & Cellular Proteomics.
Beatriz Peñalver Bernabé,
J. Sáez-Rodríguez,
Aidan MacNamara,
2012,
Physical biology.
Michael P. Morrissey,
S. Ramaswamy,
J. Lehár,
2015,
Nature.
Julio Saez-Rodriguez,
Andreas Kremling,
Ernst Dieter Gilles,
2005,
Comput. Chem. Eng..
Community assessment of cancer drug combination screens identifies strategies for synergy prediction
Tin Chi Nguyen,
Robert M. Vogel,
M. Zaslavskiy,
2017,
bioRxiv.
Donna K. Slonim,
Junpeng Zhang,
Daniel Marbach,
2018
.
J. Sáez-Rodríguez,
Luz Garcia-Alonso,
Mahmoud M. Ibrahim,
2018,
bioRxiv.
Emanuel J. V. Gonçalves,
U. Sauer,
J. Sáez-Rodríguez,
2016,
bioRxiv.
J. Sáez-Rodríguez,
M. Garnett,
M. Menden,
2019,
npj Systems Biology and Applications.
Ingo Roeder,
Olaf Wolkenhauer,
Nils Blüthgen,
2018,
Experimental & Molecular Medicine.
David R. Willé,
I. Martincorena,
U. McDermott,
2016,
bioRxiv.
Bertram Klinger,
Nils Blüthgen,
Julio Saez-Rodriguez,
2016
.
Junedh M. Amrute,
M. Morshuis,
L. V. Van Laake,
2020,
Nature.
Emanuel J. V. Gonçalves,
F. Iorio,
J. Sáez-Rodríguez,
2019,
Nature.
V. Hatzimanikatis,
J. Sáez-Rodríguez,
2015,
Integrative biology : quantitative biosciences from nano to macro.
A. Beyer,
J. Sáez-Rodríguez,
Bernd Bodenmiller,
2020,
bioRxiv.
Construction of signaling pathways and identification of drug effects on the liver cancer cell HepG2
A. Mitsos,
J. Sáez-Rodríguez,
L. Alexopoulos,
2010,
2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.
E D Gilles,
E. Gilles,
J. Raisch,
2005,
Systems biology.
Donna K. Slonim,
Daniel Marbach,
Xiaozhe Hu,
2019,
Nature Methods.
Tero Aittokallio,
Julio Saez-Rodriguez,
Francesco Iorio,
2016,
Drug discovery today.
Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component Analysis
O. Stegle,
J. Sáez-Rodríguez,
Bernd Bodenmiller,
2018,
bioRxiv.
J. Sáez-Rodríguez,
L. Alexopoulos,
T. Sakellaropoulos,
2017
.
Christian H. Holland,
J. Sáez-Rodríguez,
L. Alexopoulos,
2019,
Kidney international reports.
J. Sáez-Rodríguez,
L. Alexopoulos,
Mahmoud M. Ibrahim,
2018,
bioRxiv.
Julio Saez-Rodriguez,
Bence Szalai,
J. Sáez-Rodríguez,
2018,
bioRxiv.
D. Lauffenburger,
P. Sorger,
J. Sáez-Rodríguez,
2010
.
Christian H. Holland,
J. Sáez-Rodríguez,
J. Saez-Rodriguez,
2019,
bioRxiv.
J. Sáez-Rodríguez,
T. Korcsmáros,
D. Turei,
2022,
npj Systems Biology and Applications.
Emanuel J. V. Gonçalves,
H. Grabsch,
H. Lehrach,
2015
.
Lena Maier-Hein,
Annika Reinke,
Matthias Eisenmann,
2020
.
Mar'ia Rodr'iguez Mart'inez,
D. Parsons,
Pavel Sumazin,
2017,
npj Systems Biology and Applications.
Keith A. Boroevich,
Mathew R Divine,
Benjamin J. Hescott,
2019
.
Emanuel J. V. Gonçalves,
M. Stratton,
G. Bignell,
2016
.
Ludovic C. Gillet,
C. Sander,
P. Bork,
2018,
bioRxiv.
Emanuel J. V. Gonçalves,
Fengtang Yang,
G. Bignell,
2019,
bioRxiv.
J. Sáez-Rodríguez,
M. Garnett,
F. Kogera,
2016,
bioRxiv.
J. Kleinjans,
J. Sáez-Rodríguez,
L. Furlong,
2018,
Front. Genet..
System-wide quantitative proteomics of the metabolic syndrome in mice: genotypic and dietary effects
Emanuel J. V. Gonçalves,
R. Aebersold,
J. Sáez-Rodríguez,
2016,
bioRxiv.
S. Bulik,
H. Holzhütter,
J. Sáez-Rodríguez,
2018,
bioRxiv.
A. Gavin,
J. Sáez-Rodríguez,
D. Turei,
2016,
Progress in lipid research.
J. Banga,
J. Sáez-Rodríguez,
A. Gábor,
2022,
Expert Syst. Appl..
G. Superti-Furga,
J. Sáez-Rodríguez,
M. Brehme,
2018,
bioRxiv.
G. Superti-Furga,
J. Sáez-Rodríguez,
M. Brehme,
2018,
bioRxiv.
J. Sáez-Rodríguez,
K. Knobeloch,
M. Prinz,
2020,
SSRN Electronic Journal.
J. Sáez-Rodríguez,
Michael Schubert,
2013
.
Julio Saez-Rodriguez,
Theodore Sakellaropoulos,
Leonidas G Alexopoulos,
2015,
Integrative biology : quantitative biosciences from nano to macro.
Benjamin M. Gyori,
John A. Bachman,
Sara Sadat Aghamiri,
2021,
Molecular systems biology.
Jonathan R. Karr,
J. Hasenauer,
J. Sáez-Rodríguez,
2020,
Bioinform..
J. Sáez-Rodríguez,
L. Broadbelt,
L. Shea,
2014,
Integrative biology : quantitative biosciences from nano to macro.
Benjamin M. Gyori,
Charles Tapley Hoyt,
Maximilian T. Strauss,
2022,
2212.13543.
J. Sáez-Rodríguez,
J. Tanevski,
L. Vale-Silva,
2023,
ArXiv.
Frank Allgöwer,
E. D. Gilles,
H. Conzelmann,
2004
.
Steffen Klamt,
Miguel Rocha,
Julio Saez-Rodriguez,
2013,
Molecular bioSystems.
James Hensman,
Julio Saez-Rodriguez,
Frank Dondelinger,
2020,
bioRxiv.
Douglas A. Lauffenburger,
Julio Saez-Rodriguez,
Oliver Stegle,
2019,
bioRxiv.
Ke Xu,
Thomas Yu,
Julio Saez-Rodriguez,
2019,
bioRxiv.
Steffen Klamt,
Julio Saez-Rodriguez,
Ernst Dieter Gilles,
2007,
PLoS Comput. Biol..
Steffen Klamt,
Julio Saez-Rodriguez,
Ernst Dieter Gilles,
2006,
BMC Bioinformatics.
A. Kremling,
E.D. Gilles,
J. Saez-Rodriguez,
2004,
IEEE Control Systems.
Julio Saez-Rodriguez,
Ernst Dieter Gilles,
Martin Ginkel,
2008,
ECCB.
J. Sáez-Rodríguez,
R. Schneider,
I. Costa,
2021,
bioRxiv.
Julio Saez-Rodriguez,
Douglas A. Lauffenburger,
R. Krishna Murthy Karuturi,
2010
.
J. Sáez-Rodríguez,
T. Korcsmáros,
D. Turei,
2022,
npj Systems Biology and Applications.
A. Schlitzer,
J. Sáez-Rodríguez,
J. Lundeberg,
2021,
Immunity.
Tamás Korcsmáros,
Attila Gábor,
Dénes Türei,
2020,
bioRxiv.
V. Beneš,
J. Sáez-Rodríguez,
L. Mathur,
2022,
Nature Communications.
Steffen Klamt,
Fabian J. Theis,
Julio Saez-Rodriguez,
2009,
BMC Systems Biology.
Panuwat Trairatphisan,
Julio Saez-Rodriguez,
Enio Gjerga,
2019,
npj Systems Biology and Applications.
J. Sáez-Rodríguez,
M. Garnett,
J. Saez-Rodriguez,
2016,
Nature Communications.
Aurelien Dugourd,
Julio Saez-Rodriguez,
Rafael Kramann,
2020,
bioRxiv.
Benjamin M. Gyori,
Charles Tapley Hoyt,
Maximilian T. Strauss,
2022,
2212.13543.
J. Sáez-Rodríguez,
J. Tanevski,
A. Gábor,
2022,
Genome Biology.
Peter K. Sorger,
Douglas A. Lauffenburger,
Melody K. Morris,
2010,
Biochemistry.
Julio Saez-Rodriguez,
Peter K. Sorger,
Douglas A. Lauffenburger,
2007,
PLoS Comput. Biol..
Andreas Zell,
Claudine Chaouiya,
Julio Saez-Rodriguez,
2013,
BMC Systems Biology.
Steffen Klamt,
Julio Saez-Rodriguez,
Ernst Dieter Gilles,
2007,
BMC Systems Biology.
Markus M. Rinschen,
J. Sáez-Rodríguez,
2020,
Nature Reviews Nephrology.
Jannis Born,
Matteo Manica,
Ali Oskooei,
2019,
Molecular pharmaceutics.
M. Stratton,
L. Stebbings,
G. Bignell,
2017,
bioRxiv.
Julio Saez-Rodriguez,
Mi Yang,
Jonathan R Dry,
2016,
Genome Medicine.
Julio Saez-Rodriguez,
Francesco Iorio,
Pedro J. Ballester,
2012,
PloS one.
E. Barillot,
J. Sáez-Rodríguez,
L. Calzone,
2022
.
Julio Saez-Rodriguez,
Aurelien Dugourd,
J. Sáez-Rodríguez,
2019,
Current opinion in systems biology.
Linda G. Griffith,
Julio Saez-Rodriguez,
Douglas A. Lauffenburger,
2009,
2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.
James C. Wright,
Emanuel J. V. Gonçalves,
A. Brazma,
2018
.
Emanuel J. V. Gonçalves,
J. Sáez-Rodríguez,
P. Beltrão,
2016,
bioRxiv.
Julio Saez-Rodriguez,
Panuwat Trairatphisan,
Jonathan Barratt,
2019,
NPJ systems biology and applications.
David R. Willé,
I. Martincorena,
U. McDermott,
2016
.
Steffen Klamt,
Julio Saez-Rodriguez,
Peter K. Sorger,
2009,
PLoS Comput. Biol..
Emanuel J. V. Gonçalves,
A. Butler,
F. Iorio,
2017,
BMC Genomics.
Julio Saez-Rodriguez,
Francesco Iorio,
Viji M. Draviam,
2015,
PloS one.
Julio Saez-Rodriguez,
Federica Eduati,
Ramesh Utharala,
2016,
bioRxiv.
R. Pepperkok,
J. Sáez-Rodríguez,
Aidan MacNamara,
2014,
Science Signaling.
Julio Saez-Rodriguez,
Boris N. Kholodenko,
Ernst Dieter Gilles,
2006,
BMC Bioinformatics.
Emanuel J. V. Gonçalves,
F. Iorio,
J. Sáez-Rodríguez,
2019,
Nature.
Denis Thieffry,
Claudine Chaouiya,
Julio Saez-Rodriguez,
2016,
Front. Genet..
Steffen Klamt,
Aurélien Naldi,
Denis Thieffry,
2013,
BMC Systems Biology.
Steffen Klamt,
Julio Saez-Rodriguez,
Ernst Dieter Gilles,
2006,
BMC Bioinformatics.
Emanuel J. V. Gonçalves,
Fengtang Yang,
G. Bignell,
2019,
Nature Communications.
Aurélien Naldi,
Denis Thieffry,
Claudine Chaouiya,
2014,
bioRxiv.
Giuseppe Jurman,
D. Wedge,
L. Alexandrov,
2012
.
Julio Saez-Rodriguez,
David Tamborero,
Francesco Iorio,
2014,
Bioinform..
I. Catalá,
M. Esteller,
A. Sieuwerts,
2016,
Oncogene.
Julio Saez-Rodriguez,
Thomas Cokelaer,
Jordi Serra-Musach,
2013,
Bioinform..
Julio Saez-Rodriguez,
Camille Terfve,
J. Sáez-Rodríguez,
2012,
Advances in experimental medicine and biology.
Julio Saez-Rodriguez,
Martijn P. van Iersel,
Emanuel J. V. Gonçalves,
2012,
BMC Systems Biology.
Julio Saez-Rodriguez,
Howard Lightfoot,
Francesco Iorio,
2017,
bioRxiv.
Julio Saez-Rodriguez,
Diego di Bernardo,
Francesco Iorio,
2013,
BMC Systems Biology.
Julio Saez-Rodriguez,
Alexander Mitsos,
Leonidas G. Alexopoulos,
2009,
PLoS Comput. Biol..
Julio Saez-Rodriguez,
Francesco Iorio,
Giuseppe Jurman,
2016,
BMC Bioinformatics.
Ludovic C. Gillet,
A. Beyer,
Nicola Zamboni,
2020,
Cell.
Julio Saez-Rodriguez,
Javier De Las Rivas,
Gianna Toffolo,
2012,
Bioinform..
Mingsheng Zhang,
Leonidas G Alexopoulos,
Douglas A Lauffenburger,
2011,
Cancer research.
Amir K. Foroushani,
Yuanfang Guan,
Jaewoo Kang,
2019,
Nature Communications.
Pauline Traynard,
Laurence Calzone,
Luis Tobalina,
2017,
CPT: pharmacometrics & systems pharmacology.
Julio Saez-Rodriguez,
Peter K. Sorger,
Douglas A. Lauffenburger,
2008,
Bioinform..
Julio Saez-Rodriguez,
Peter K. Sorger,
Douglas A. Lauffenburger,
2011,
PLoS Comput. Biol..
P. Boor,
J. Sáez-Rodríguez,
R. D. Bülow,
2021,
Seminars in Immunopathology.
Julio Saez-Rodriguez,
Leonidas G. Alexopoulos,
Christopher W. Espelin,
2022
.
J. Sáez-Rodríguez,
L. Alexopoulos,
T. Sakellaropoulos,
2021,
Genome Medicine.
Steffen Klamt,
Julio Saez-Rodriguez,
Carito Guziolowski,
2015,
BMC Bioinformatics.
David Henriques,
Julio Saez-Rodriguez,
Thomas Cokelaer,
2013,
BMC Bioinformatics.
Eva Balsa-Canto,
David Henriques,
Julio Saez-Rodriguez,
2015,
BMC Systems Biology.
Pedro Beltrão,
Julio Saez-Rodriguez,
Claudia Hernandez-Armenta,
2016,
bioRxiv.
Martin Gebser,
Torsten Schaub,
Julio Saez-Rodriguez,
2015,
Theor. Comput. Sci..
Pedro Beltrão,
Julio Saez-Rodriguez,
David Ochoa,
2016,
bioRxiv.
Miguel Rocha,
Julio Saez-Rodriguez,
Julio R. Banga,
2017,
PLoS Comput. Biol..
Aurélien Naldi,
Denis Thieffry,
Claudine Chaouiya,
2020,
Briefings Bioinform..
Julio Saez-Rodriguez,
Andreas Kremling,
Ernst Dieter Gilles,
2004
.
Steffen Klamt,
Julio Saez-Rodriguez,
Emanuel J. V. Gonçalves,
2014,
Biosyst..
Julio Saez-Rodriguez,
Jens Timmer,
Erhan Bilal,
2014,
BMC Systems Biology.
David Henriques,
Miguel Rocha,
Julio Saez-Rodriguez,
2015,
Bioinform..
Eva Balsa-Canto,
David Henriques,
Julio Saez-Rodriguez,
2014,
ArXiv.
PaccMann: Prediction of anticancer compound sensitivity with multi-modal attention-based neural networks
pdf
Vigneshwari Subramanian,
Jannis Born,
María Rodríguez Martínez,
2018,
ArXiv.
Rosa D. Hernansaiz-Ballesteros,
Julio Saez-Rodriguez,
Aurelien Dugourd,
2021,
Bioinform..
J. Sáez-Rodríguez,
Sebastian Lobentanzer,
2023,
2305.06488.
Thomas Yu,
Shrabanti Chowdhury,
Jun Zhu,
2020,
bioRxiv.
Julio Saez-Rodriguez,
Manuela Helmer-Citterich,
Pier Federico Gherardini,
2012,
Molecular systems biology.
Jonathan R. Karr,
J. Sáez-Rodríguez,
Reinhard Schneider,
2021,
Briefings Bioinform..
E D Gilles,
F Allgöwer,
F. Allgöwer,
2004,
Systems biology.
Julio Saez-Rodriguez,
Peer Bork,
Emanuel J. V. Gonçalves,
2012,
Bioinform..
R. Norel,
R. Bellazzi,
R. Prill,
2016,
BMC Bioinformatics.
E. Gilles,
J. Sáez-Rodríguez,
Xiaoqian Wang,
2008
.
Giuseppe Jurman,
J. Sáez-Rodríguez,
Francesco Iorio,
2016,
bioRxiv.
Daniel Marbach,
Julio Saez-Rodriguez,
Peter K. Sorger,
2010,
PloS one.
D. Adams,
J. Sáez-Rodríguez,
R. McIntyre,
2019,
Nature Communications.
Christian H. Holland,
J. Sáez-Rodríguez,
Luz Garcia-Alonso,
2021,
Genome research.
J. Sáez-Rodríguez,
J. Tanevski,
L. Vale-Silva,
2023,
2301.01682.
Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component Analysis
Julio Saez-Rodriguez,
Bernd Bodenmiller,
Damien Arnol,
2019,
Cell reports.
Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing
Gary D Bader,
David B. Blumenthal,
Julian O. Matschinske,
2023,
ArXiv.
J. Sáez-Rodríguez,
Sebastian Lobentanzer,
2023,
2305.06488.
Julio Saez-Rodriguez,
Carito Guziolowski,
Thomas Cokelaer,
2013,
Bioinform..
David R. Penas,
J. Banga,
J. Sáez-Rodríguez,
2019,
The Journal of Supercomputing.
J. Sáez-Rodríguez,
F. Eduati,
T. Cokelaer,
2014,
Bioinformatics.
D. Lauffenburger,
P. Sorger,
Mingsheng Zhang,
2011
.
F. Iorio,
J. Sáez-Rodríguez,
M. Garnett,
2017,
bioRxiv.
J. Kleinjans,
J. Sáez-Rodríguez,
D. Jennen,
2021,
bioRxiv.
Yves Moreau,
Mi Yang,
Julio Saez-Rodriguez,
2017,
bioRxiv.
Christian H. Holland,
J. Sáez-Rodríguez,
J. Saez-Rodriguez,
2019,
Nucleic acids research.
Benjamin J. Hescott,
Ted E. Natoli,
L. Cowen,
2018
.
A. Schlitzer,
J. Sáez-Rodríguez,
J. Lundeberg,
2022,
Immunity.
Julio Saez-Rodriguez,
Alexander Mitsos,
Douglas A. Lauffenburger,
2012,
PloS one.
D. Lauffenburger,
P. Sorger,
J. Sáez-Rodríguez,
2009,
Molecular systems biology.
P. Boor,
B. Rovin,
V. Jha,
2023,
Kidney international.
Christian H. Holland,
J. Sáez-Rodríguez,
J. Lanzer,
2021,
Journal of the American Heart Association.
Suleiman A. Khan,
T. Aittokallio,
F. Iorio,
2016,
Drug discovery today.
Julio Saez-Rodriguez,
Mitja Lustrek,
Robert Patro,
2016,
BMC Bioinformatics.
A. Gavin,
J. Sáez-Rodríguez,
D. Turei,
2016,
Progress in lipid research.
Julio Saez-Rodriguez,
Tamás Korcsmáros,
Dénes Türei,
2016,
Nature Methods.
D. Lauffenburger,
P. Sorger,
Mingsheng Zhang,
2011,
Cancer research.
J. Sáez-Rodríguez,
J. Tanevski,
L. Vale-Silva,
2023,
2301.01682.
Sinem K. Saka,
J. Sáez-Rodríguez,
T. Alexandrov,
2023,
Molecular systems biology.
Julio Saez-Rodriguez,
Ernst Dieter Gilles,
Holger Conzelmann,
2011
.
E. Gilles,
J. Sáez-Rodríguez,
Martin Ginkel,
2008,
ECCB.
Aurélien Naldi,
Denis Thieffry,
Claudine Chaouiya,
2014,
bioRxiv.
J. Sáez-Rodríguez,
C. Pacini,
2013
.
J. Sáez-Rodríguez,
M. Garnett,
P. Jaaks,
2020,
Molecular Systems Biology.
Julio Saez-Rodriguez,
Julio Saez-Rodriguez,
Attila Gábor,
2019,
IFAC-PapersOnLine.
Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming
pdf
Julio Saez-Rodriguez,
Carito Guziolowski,
Niels Grabe,
2012,
ArXiv.