D. Gupta

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Classification models for clear cell renal carcinoma stage progression, based on tumor RNAseq expression trained supervised machine learning algorithms

Zeenia Jagga, D. Gupta, 2014, BMC Proceedings.

Gene Network Rewiring to Study Melanoma Stage Progression and Elements Essential for Driving Melanoma

D. Gupta, A. Kaushik, Y. Bhatia, 2015, PloS one.

Machine learning for biomarker identification in cancer research - developments toward its clinical application.

Dinesh Gupta, Zeenia Jagga, D. Gupta, 2015, Personalized medicine.

PRmePRed: A protein arginine methylation prediction tool

D. Gupta, Pawan Kumar, Joseph Joy, 2017, PloS one.

ApicoTFdb: The comprehensive web repository of apicomplexan transcription factors and regulators

D. Gupta, A. Kaushik, Shakir Ali, 2019, bioRxiv.

Chaperones and foldases in endoplasmic reticulum stress signaling in plants

D. Gupta, N. Tuteja, 2011, Plant signaling & behavior.

FaaPred: A SVM-Based Prediction Method for Fungal Adhesins and Adhesin-Like Proteins

Dinesh Gupta, Jayashree Ramana, D. Gupta, 2010, PloS one.

Support Vector Machine Based Classification Model for Screening Plasmodium falciparum Proliferation Inhibitors and Non-Inhibitors

D. Gupta, S. Subramaniam, Monica Mehrotra, 2011 .

CyclinPred: A SVM-Based Method for Predicting Cyclin Protein Sequences

Dinesh Gupta, Gajendra P. S. Raghava, Umesh K. Nandal, 2008, PloS one.

Comparative insights into the saccharification potentials of a relatively unexplored but robust Penicillium funiculosum glycoside hydrolase 7 cellobiohydrolase

D. Gupta, Rakesh Kumar, S. Yazdani, 2017, Biotechnology for Biofuels.

Comparative analyses of SAR-CoV2 genomes from different geographical locations and other coronavirus family genomes reveals unique features potentially consequential to host-virus interaction and pathogenesis

D. Gupta, Rahila Sardar, D. Satish, 2020, bioRxiv.

Insights into the structural and dynamical changes of spike glycoprotein mutations associated with SARS-CoV-2 host receptor binding

D. Gupta, Shahzaib Ahamad, Hema Kanipakam, 2020, Journal of biomolecular structure & dynamics.

Widespread occurrence of lysine methylation in Plasmodium falciparum proteins at asexual blood stages

D. Gupta, A. Kaushik, P. Malhotra, 2016, Scientific Reports.

Classifying juvenile onset primary open angle glaucoma using cluster analysis

D. Gupta, Viney Gupta, B. I. Somarajan, 2019, British Journal of Ophthalmology.

Identification of Novel SARS-CoV-2 Drug Targets by Host MicroRNAs and Transcription Factors Co-regulatory Interaction Network Analysis

D. Gupta, Rahila Sardar, D. Satish, 2020, Frontiers in Genetics.

Characterization and localization of Plasmodium falciparum homolog of prokaryotic ClpQ/HslV protease.

Virander S. Chauhan, D. Gupta, G. Ramasamy, 2007, Molecular and biochemical parasitology.

Integrative analyses of SARS-CoV-2 genomes from different geographical locations reveal unique features potentially consequential to host-virus interaction, pathogenesis and clues for novel therapies

D. Gupta, Rahila Sardar, D. Satish, 2020, Heliyon.

In-silico profiling and structural insights into the impact of nSNPs in the P. falciparum acetyl-CoA transporter gene to understand the mechanism of drug resistance in malaria

D. Gupta, Shakir Ali, Shahzaib Ahamad, 2020, Journal of biomolecular structure & dynamics.

Ligand-based pharmacophore modeling of TNF-α to design novel inhibitors using virtual screening and molecular dynamics

D. Gupta, Rakesh Kumar, R. Pandey, 2020, Journal of biomolecular structure & dynamics.

Natural selection plays a significant role in governing the codon usage bias in the novel SARS-CoV-2 variants of concern (VOC)

D. Gupta, Rahila Sardar, Neetu Tyagi, 2022, PeerJ.

iRSVPred: A Web Server for Artificial Intelligence Based Prediction of Major Basmati Paddy Seed Varieties

D. Gupta, Arun Sharma, D. Satish, 2020, Frontiers in Plant Science.

Bazedoxifene, a Postmenopausal Drug, Acts as an Antimalarial and Inhibits Hemozoin Formation

D. Gupta, P. Sijwali, Abhipsa Panda, 2022, Microbiology spectrum.

Targeting SARS-CoV-2 nucleocapsid oligomerization: Insights from molecular docking and molecular dynamics simulations

D. Gupta, Vijay Kumar, Shahzaib Ahamad, 2020, Journal of biomolecular structure & dynamics.

ASCoVPred: a machine learning-based platform for quantitative prediction of anti-SARS-CoV-2 activity and human cell toxicity of molecules

D. Gupta, Arun Sharma, N. Chaturvedi, 2021 .

Indian major basmati paddy seed varieties images dataset

D. Gupta, Arun Sharma, D. Satish, 2020, Data in brief.

Latent Tuberculosis Infection Diagnosis among Household Contacts in a High Tuberculosis-Burden Area: a Comparison between Transcript Signature and Interferon Gamma Release Assay

D. Gupta, Shakir Ali, A. Khanna, 2022, Microbiology spectrum.

A genome-wide analysis of coatomer protein (COP) subunits of apicomplexan parasites and their evolutionary relationships

D. Gupta, P. Malhotra, J. Ferdous, 2019, BMC Genomics.

The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host–parasite interaction

Tareq B. Malas, M. Quail, J. Gamble, 2014, Nucleic acids research.

Structural stability predictions and molecular dynamics simulations of RBD and HR1 mutations associated with SARS-CoV-2 spike glycoprotein

D. Gupta, Shahzaib Ahamad, K. Hema, 2021, Journal of biomolecular structure & dynamics.

A novel identification approach for discovery of 5-HydroxyTriptamine 2A antagonists: combination of 2D/3D similarity screening, molecular docking and molecular dynamics

D. Gupta, Rakesh Kumar, Dhananjay Jade, 2019, Journal of biomolecular structure & dynamics.

High throughput in silico identification and characterization of Plasmodium falciparum PRL phosphatase inhibitors

D. Gupta, R. Tewari, Rakesh Kumar, 2018, Journal of biomolecular structure & dynamics.

Role of CYP1B1, p.E229K and p.R368H mutations among 120 families with sporadic juvenile onset open-angle glaucoma

D. Gupta, A. Kaushik, Viney Gupta, 2018, Graefe's Archive for Clinical and Experimental Ophthalmology.

Changes in strand 6B and helix B during neuroserpin inhibition: Implication in severity of clinical phenotype.

D. Gupta, A. Kaushik, M. A. Jairajpuri, 2020, Biochimica et biophysica acta. Proteins and proteomics.

S.Typhi derived OmpC peptide conjugated with Vi-polysaccharide evokes better immune response than free Vi-polysaccharide in mice.

D. Gupta, M. Bhan, S. Haque, 2019, Biologicals : journal of the International Association of Biological Standardization.

Identification and characterization of a novel isoform of heparin cofactor II in human liver

D. Gupta, S. Fatima, Shahzaib Ahamad, 2020, IUBMB life.

Exploring Heme and Hemoglobin Binding Regions of Plasmodium Heme Detoxification Protein for New Antimalarial Discovery.

D. Gupta, R. Bhatnagar, A. Kaushik, 2017, Journal of medicinal chemistry.

Characterization of Plasmodium falciparum RAP domain proteins-RAP291 and RAP070, and their association with ribosomal RNAs

D. Gupta, M. Theisen, P. Malhotra, 2022, bioRxiv.

RNAi Suppressors: Biology and Mechanisms

D. Gupta, S. Chakraborty, S. Mukherjee, 2017 .

Investigation of Multiple Resistance Mechanisms in Voriconazole-Resistant Aspergillus flavus Clinical Isolates from a Chest Hospital Surveillance in Delhi, India

D. Gupta, Nitin Kumar, A. Chowdhary, 2018, Antimicrobial Agents and Chemotherapy.

Identification of COVID-19 prognostic markers and therapeutic targets through meta-analysis and validation of Omics data from nasopharyngeal samples

D. Gupta, D. Saini, S. Tripathi, 2021, bioRxiv.

Screening Malaria-box compounds to identify potential inhibitors against SARS-CoV-2 Mpro, using molecular docking and dynamics simulation studies

D. Gupta, Shahzaib Ahamad, S. Birla, 2020, European Journal of Pharmacology.

Metagenomic analysis of the fecal microbiome of an adult elephant reveals the diversity of CAZymes related to lignocellulosic biomass degradation

Manoj Kumar, D. Gupta, Manoj Kumar, 2020, Symbiosis.

Comparative analysis of codon usage patterns in SARS-CoV-2, its mutants and other respiratory viruses

D. Gupta, N. Tyagi, Rahila Sardar, 2021, bioRxiv.

Comparative insight into nucleotide excision repair components of Plasmodium falciparum.

D. Gupta, R. Tuteja, L. Tajedin, 2015, DNA repair.

The landscape of microRNAs in plant viral infections

D. Gupta, S. Mukherjee, D. Satish, 2021 .

Identification of mirtrons in rice using MirtronPred: a tool for predicting plant mirtrons.

D. Gupta, U. Nandal, S. Mukherjee, 2012, Genomics.

Artemisinin Binds and Inhibits the Activity of Plasmodium falciparum Ddi1, a Retroviral Aspartyl Protease

D. Gupta, Mohit Kumar, P. Malhotra, 2021, Pathogens.

Artemisinin acts by inhibiting Plasmodium falciparum Ddi1, a retropepsin, resulting into the accumulation of ubiquitinated proteins

D. Gupta, Mohit Kumar, P. Malhotra, 2021, bioRxiv.

PAmiRDB: A web resource for plant miRNAs targeting viruses

D. Gupta, S. Mukherjee, D. Satish, 2019, Scientific Reports.

A systematic classification of Plasmodium falciparum P-loop NTPases: structural and functional correlation

Virander S. Chauhan, D. Gupta, Mridul K. Kalita, 2009, Malaria Journal.

Machine Learning Methods for Prediction of CDK-Inhibitors

Dinesh Gupta, Jayashree Ramana, D. Gupta, 2010, PloS one.

Genome wide in silico analysis of Plasmodium falciparum phosphatome

D. Gupta, P. Malhotra, A. Mohmmed, 2014, BMC Genomics.

Artificial Intelligence-Based Classification of Chest X-Ray Images into COVID-19 and Other Infectious Diseases

Sheeba J. Rani, D. Gupta, Arun Sharma, 2020, Int. J. Biomed. Imaging.

Plasmodium falciparum metacaspase-2 capture its natural substrate in a non-canonical way.

D. Gupta, K. Pandey, R. Pandey, 2021, Journal of biochemistry.

Lead optimization, pharmacophore development and scaffold design of protein kinase CK2 inhibitors as potential COVID-19 therapeutics

D. Gupta, Shahzaib Ahamad, Siddharth Yadav, 2022, Journal of biomolecular structure & dynamics.

The ORF3 Protein of Hepatitis E Virus Binds to Src Homology 3 Domains and Activates MAPK*

D. Gupta, S. Jameel, S. Lal, 2001, The Journal of Biological Chemistry.

In-Silico Functional Annotation of Plasmodium falciparum Hypothetical Proteins to Identify Novel Drug Targets

D. Gupta, Gagandeep Singh, 2022, Frontiers in Genetics.

Proteomic Identification and Analysis of Arginine-Methylated Proteins of Plasmodium falciparum at Asexual Blood Stages.

D. Gupta, A. Kaushik, P. Malhotra, 2017, Journal of proteome research.

ProtRepeatsDB: a database of amino acid repeats in genomes

Dinesh Gupta, Sekhar Duraisamy, Gowthaman Ramasamy, 2006, BMC Bioinformatics.

VirulentPred: a SVM based prediction method for virulent proteins in bacterial pathogens

Dinesh Gupta, Aarti Garg, D. Gupta, 2008, BMC Bioinformatics.

Metagenomic analysis of the fecal microbiome of an adult elephant reveals the diversity of CAZymes related to lignocellulosic biomass degradation

M. Kumar, D. Gupta, Joginder Singh, 2020, Symbiosis.

KiPho: malaria parasite kinome and phosphatome portal

Dinesh Gupta, Pawan Kumar, Rajan Pandey, 2017, Database J. Biol. Databases Curation.

Molecular characterization of the Rep protein of the blackgram isolate of Indian mungbean yellow mosaic virus.

D. Gupta, S. Mukherjee, A. Varma, 2001, The Journal of general virology.

Plasmodium DEH is crucial for oocyst mitotic division but not cell size during malaria transmission

D. Gupta, A. Holder, D. Ferguson, 2020, bioRxiv.

Plasmodium DEH is ER-localized and crucial for oocyst mitotic division during malaria transmission

D. Gupta, A. Holder, D. Ferguson, 2020, Life Science Alliance.

A 3-hydroxyacyl-CoA dehydratase (DEH) involved in very long chain fatty acid synthesis is crucial for oocyst mitotic division but not cell size during parasite transmission in Plasmodium

D. Gupta, A. Holder, D. Ferguson, 2020 .

Thermo and pH stable ATP-independent chaperone activity of heat-inducible Hsp70 from Pennisetum glaucum

D. Gupta, N. Tuteja, P. S. Reddy, 2010, Plant signaling & behavior.

Targeting cathepsins: A potential link between COVID-19 and associated neurological manifestations

D. Gupta, Vijay Kumar, Shahzaib Ahamad, 2021, Heliyon.

Plasmodium Condensin Core Subunits SMC2/SMC4 Mediate Atypical Mitosis and Are Essential for Parasite Proliferation and Transmission

D. Gupta, K. L. Le Roch, A. Holder, 2019, bioRxiv.

Identification of CYP1B1‐specific candidate inhibitors using combination of in silico screening, integrated knowledge‐based filtering, and molecular dynamics simulations

D. Gupta, Rakesh Kumar, 2016, Chemical biology & drug design.

The structural, functional, and dynamic effect of Tau tubulin kinase1 upon a mutation: A neuro‐degenerative hotspot

D. Gupta, Vijay Kumar, Shahzaib Ahamad, 2021, Journal of cellular biochemistry.

Anti-Fungal Drug Anidulafungin Inhibits SARS-CoV-2 Spike-Induced Syncytia Formation by Targeting ACE2-Spike Protein Interaction

M. Giacca, D. Gupta, Shahzaib Ahamad, 2022, Frontiers in Genetics.

Identification of new oxospiro chromane quinoline-carboxylate antimalarials that arrest parasite growth at ring stage.

D. Gupta, P. Malhotra, M. Malik, 2023, Journal of biomolecular structure & dynamics.

Atomic Resolution Homology Models and Molecular Dynamics Simulations of Plasmodium falciparum Tubulins

D. Gupta, Shahzaib Ahamad, R. Pandey, 2021, ACS omega.

Detection of truncated isoforms of human neuroserpin lacking the reactive center loop: Implications in noninhibitory role

D. Gupta, S. Fatima, Shahzaib Ahamad, 2021, IUBMB life.

Quantitative Structure Activity Relationship Study of MF-63 (Phenanthrene Imidazole Series) Derivatives for mPGES-1 Inhibitory Activity

D. Gupta, Rakesh Kumar, S. Misra, 2016 .

Plasmodium falciparum DDX17 is an RNA helicase crucial for parasite development

D. Gupta, R. Tuteja, M. Chauhan, 2021, Biochemistry and biophysics reports.

Computational Design of Novel Allosteric Inhibitors for Plasmodium falciparum DegP

D. Gupta, P. Malhotra, R. Pandey, 2021, Molecules.

Designing of new tetrahydro-β-carboline-based ABCG2 inhibitors using 3D-QSAR, molecular docking, and DFT tools.

D. Gupta, A. Islam, Shahnawaz Ahmad, 2023, Journal of biomolecular structure & dynamics.

Supervised Learning Classification Models for Prediction of Plant Virus Encoded RNA Silencing Suppressors

Dinesh Gupta, Zeenia Jagga, D. Gupta, 2014, PloS one.

Distribution of proline-rich (PxxP) motifs in distinct proteomes: functional and therapeutic implications for malaria and tuberculosis.

Dinesh Gupta, D. Gupta, Amit Sharma, 2004, Protein engineering, design & selection : PEDS.

Design and evaluation of pyrimidine derivatives as potent inhibitors of ABCG2, a breast cancer resistance protein

D. Gupta, A. Islam, Shahnawaz Ahmad, 2022, 3 Biotech.

A cyanobacterial serine protease of Plasmodium falciparum is targeted to the apicoplast and plays an important role in its growth and development

Virander S. Chauhan, D. Gupta, S. Sieber, 2010, Molecular microbiology.

A molecular journey to check the conformational dynamics of tau tubulin kinase 2 mutations associated with Alzheimer's disease

D. Gupta, Vijay Kumar, Shahzaib Ahamad, 2021, RSC advances.

Virtual high throughput screening (vHTS) - A perspective

D. Gupta, S. Subramaniam, Monica Mehrotra, 2008, Bioinformation.

Deciphering novel common gene signatures for rheumatoid arthritis and systemic lupus erythematosus by integrative analysis of transcriptomic profiles

D. Gupta, N. Tyagi, Kusum Mehla, 2023, PloS one.

Structural insights into the mechanism of human methyltransferase hPRMT4

D. Gupta, Rakesh Kumar, A. Singh, 2021, Journal of biomolecular structure & dynamics.

Heme Detoxification Protein ( PfHDP) is essential for the hemoglobin uptake and metabolism in Plasmodium falciparum

D. Gupta, P. Malhotra, A. Mohmmed, 2022, FASEB bioAdvances.

Identification of Novel Tau-Tubulin Kinase 2 Inhibitors Using Computational Approaches

D. Gupta, Shahzaib Ahamad, K. Hema, 2023, ACS omega.

A Plasmodium falciparum protein tyrosine phosphatase inhibitor identified from the ChEMBL‐NTD database blocks parasite growth

D. Gupta, P. Malhotra, A. Mohmmed, 2021, FEBS open bio.

Molecular Modeling Studies of the Interaction Between Plasmodium falciparum HslU and HslV Subunits

Dinesh Gupta, Sangeetha Subramaniam, Asif Mohmmed, 2009, Journal of biomolecular structure & dynamics.

Biochemical characterization of Plasmodium complement factors binding protein for its role in immune modulation.

K. Natarajan, D. Gupta, Shweta Sharma, 2018, The Biochemical journal.

Insights into the structure and dynamics of SARS-CoV-2 spike glycoprotein double mutant L452R-E484Q

D. Gupta, Shahzaib Ahamad, Vijay Kumar, 2022, 3 Biotech.

LipocalinPred: a SVM-based method for prediction of lipocalins

Dinesh Gupta, Jayashree Ramana, D. Gupta, 2009, BMC Bioinformatics.

ProtVirDB: a database of protozoan virulent proteins

Dinesh Gupta, Jayashree Ramana, D. Gupta, 2009, Bioinform..

DriverFuse: An R package for analysis of next-generation sequencing datasets to identify cancer driver fusion genes

D. Gupta, Shikha Roy, 2022, PloS one.

In silico characterization and molecular dynamics simulation of Pfcyc-1, a cyclin homolog of Plasmodium falciparum

D. Gupta, A. Kaushik, S. Subramaniam, 2014, Journal of biomolecular structure & dynamics.

3' and 5' microRNA-end post-biogenesis modifications in plant transcriptomes: Evidences from small RNA next generation sequencing data analysis.

Dinesh Gupta, Neeti Sanan-Mishra, D. Gupta, 2015, Biochemical and biophysical research communications.

miRMOD: a tool for identification and analysis of 5′ and 3′ miRNA modifications in Next Generation Sequencing small RNA data

Dinesh Gupta, Sunil K. Mukherjee, Abhinav Kaushik, 2015, PeerJ.

Whole-Genome Sequence of Drug-Resistant Mycobacterium tuberculosis Strain S7, Isolated from a Patient with Pulmonary Tuberculosis

D. Gupta, R. Arya, R. Nanda, 2020, Microbiology Resource Announcements.

A genome-wide analysis of coatomer protein (COP) subunits of apicomplexan parasites and their evolutionary relationships

D. Gupta, P. Malhotra, J. Ferdous, 2019, BMC Genomics.