Hua Xu

发表

A new clustering method for detecting rare senses of abbreviations in clinical notes

Carol Friedman, Hua Xu, Peter D. Stetson, 2012, J. Biomed. Informatics.

Recognizing and Encoding Discorder Concepts in Clinical Text using Machine Learning and Vector Space Model

Hua Xu, Yonghui Wu, Joshua C. Denny, 2013, CLEF.

Recognizing Medication related Entities in Hospital Discharge Summaries using Support Vector Machine

Son Doan, Hua Xu, Hua Xu, 2010, COLING.

Predicting warfarin dosage in European-Americans and African-Americans using DNA samples linked to an electronic health record.

Melissa A. Basford, Raquel M. Zink, D. Roden, 2012, Pharmacogenomics.

An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies

Jing Huang, Rui Duan, Yong Chen, 2016, AMIA.

Recognizing clinical entities in hospital discharge summaries using Structural Support Vector Machines with word representation features

Hua Xu, Yonghui Wu, Min Jiang, 2013, BMC Medical Informatics and Decision Making.

PIE: A prior knowledge guided integrated likelihood estimation method for bias reduction in association studies using electronic health records data

Jing Huang, Rui Duan, Yong Chen, 2017, J. Am. Medical Informatics Assoc..

Finding useful data across multiple biomedical data repositories using DataMed

Anupama E. Gururaj, Alejandra N. González-Beltrán, L. Ohno-Machado, 2017, Nature Genetics.

Time-sensitive clinical concept embeddings learned from large electronic health records

Yang Xiang, Cui Tao, Zhiheng Li, 2019, BMC Medical Informatics and Decision Making.

Chemical named entity recognition in patents by domain knowledge and unsupervised feature learning

Hui Chen, Yaoyun Zhang, Jun Xu, 2016, Database J. Biol. Databases Curation.

Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action

Hua Xu, Peilin Jia, Zhongming Zhao, 2015, PLoS Comput. Biol..

UTHealth at SemEval-2016 Task 12: an End-to-End System for Temporal Information Extraction from Clinical Notes

Yaoyun Zhang, Jun Xu, Jingqi Wang, 2016, *SEMEVAL.

Extracting and integrating data from entire electronic health records for detecting colorectal cancer cases.

S. Mani, J. Denny, M. Levy, 2011, AMIA ... Annual Symposium proceedings. AMIA Symposium.

Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data

Melissa A. Basford, Raquel M. Zink, J. Haines, 2013, Nature Biotechnology.

A polymorphism in HLA-G modifies statin benefit in asthma

Dan M Roden, Hua Xu, Joshua Denny, 2014, The Pharmacogenomics Journal.

Classification of Cancer Primary Sites Using Machine Learning and Somatic Mutations

Zhongming Zhao, Jingchun Sun, Hua Xu, 2015, BioMed research international.

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Hua Xu, Yang Xiang, L. Rasmy, 2019, Journal of medical Internet research.

Comorbidity in Adult Patients Hospitalized with Type 2 Diabetes in Northeast China: An Analysis of Hospital Discharge Data from 2002 to 2013

Yonghui Wu, Hua Xu, Yaoyun Zhang, 2016, BioMed research international.

A pilot study of mining association between psychiatric stressors and symptoms in tweets

Jingcheng Du, Cui Tao, Yaoyun Zhang, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Psychiatric symptom recognition without labeled data using distributional representations of phrases and on-line knowledge.

Olivia R. Zhang, Yonghui Wu, Kirk Roberts, 2017, Journal of biomedical informatics.

How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles

L. Ohno-Machado, Hua Xu, Yong Chen, 2020, Briefings Bioinform..

Toward Repurposing Metformin as a Precision Anti-Cancer Therapy Using Structural Systems Pharmacology

Zhongming Zhao, Lei Xie, Hua Xu, 2016, Scientific Reports.

Learning from local to global: An efficient distributed algorithm for modeling time-to-event data.

Howard H. Chang, Kevin B. Mahoney, Jason H. Moore, 2020, Journal of the American Medical Informatics Association : JAMIA.

Novel informatics approaches to COVID-19 Research: From methods to applications

D. Buckeridge, Hua Xu, P. Tarczy-Hornoch, 2022, Journal of Biomedical Informatics.

CTNNA3 and SEMA3D: Promising loci for asthma exacerbation identified through multiple genome-wide association studies.

S. Weiss, D. Roden, J. Denny, 2015, The Journal of allergy and clinical immunology.

Privacy-Protecting, Reliable Response Data Discovery Using COVID-19 Patient Observations

Michele E. Day, Katherine K. Kim, L. Ohno-Machado, 2020, medRxiv.

Discovery of Noncancer Drug Effects on Survival in Electronic Health Records of Patients With Cancer: A New Paradigm for Drug Repurposing

Xianglin L. Du, Yonghui Wu, Hongfang Liu, 2019, JCO clinical cancer informatics.

A systematic analysis of FDA-approved anticancer drugs

Jingqi Wang, Hua Xu, Qi Liu, 2017, BMC Systems Biology.

Combining human and machine intelligence for clinical trial eligibility querying

K. Marder, Hua Xu, C. Weng, 2022, J. Am. Medical Informatics Assoc..

Using ensembles of NLP engines without a common type system to improve abbreviation disambiguation

Hongfang Liu, Hua Xu, Serguei V. S. Pakhomov, 2017, Summit on Clinical Research Informatics.

A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case

Ergin Soysal, Hua Xu, W. Jim Zheng, 2015, BMC Systems Biology.

Education, collaboration, and innovation: intelligent biology and medicine in the era of big data

Zhongming Zhao, Yufei Huang, J. Edwards, 2015, BMC Genomics.

Determining molecular predictors of adverse drug reactions with causality analysis based on structure learning

Jun Hu, Yong Hu, Hua Xu, 2014, J. Am. Medical Informatics Assoc..

Comparing content coverage in medical curriculum to trainee-authored clinical notes.

Hua Xu, Anderson Spickard, Joshua C Denny, 2010, AMIA ... Annual Symposium proceedings. AMIA Symposium.

Developing Combination Cancer Therapy from Ontology Fingerprint Derived Gene Network

Hua Xu, Guocai Chen, W. Jim Zheng, 2015, CRI.

Predict effective drug combination by deep belief network and ontology fingerprints

Hua Xu, Guocai Chen, W. Jim Zheng, 2018, J. Biomed. Informatics.

Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge

Lucila Ohno-Machado, Hua Xu, Trevor Cohen, 2017, Database J. Biol. Databases Curation.

Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records

Hua Xu, Randolph A. Miller, Mei Liu, 2013, J. Am. Medical Informatics Assoc..

Computational methods for omics data.

Hua Xu, Yufei Huang, Zhongming Zhao, 2014, International journal of computational biology and drug design.

Toward a normalized clinical drug knowledge base in China—applying the RxNorm model to Chinese clinical drugs

Cui Tao, Li Wang, Yi Zhou, 2018, J. Am. Medical Informatics Assoc..

Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature

Hua Xu, Guocai Chen, W. Jim Zheng, 2015, ICBO.

An Integrative Framework for Drug Target Prediction and Repurposing

Cui Tao, Junjie Chen, Hua Xu, 2014, AMIA.

Parsing clinical text: how good are the state-of-the-art parsers?

Buzhou Tang, Hua Xu, Jung-wei Fan, 2015, BMC medical informatics and decision making.

Genetic variation in the UGT1A locus is associated with simvastatin efficacy in a clinical practice setting.

R. Krauss, D. Roden, J. Denny, 2014, Pharmacogenomics.

Comprehensive Characterization of COVID-19 Patients with Repeatedly Positive SARS-CoV-2 Tests Using a Large U.S. Electronic Health Record Database

X. Shu, Hua Xu, D. Aronoff, 2021, medRxiv.

Building a search engine for finding biomedical datasets across repositories – the DataMed system

Anupama E. Gururaj, Alejandra N. González-Beltrán, Trevor, 2018 .

Asthma Exacerbation Prediction and Interpretation based on Time-sensitive Attentive Neural Network: A Retrospective Cohort Study

Hua Xu, Yang Xiang, Yujia Zhou, 2019 .

The UMLS knowledge sources at 30: indispensable to current research and applications in biomedical informatics

Guilherme Del Fiol, Betsy L. Humphreys, Hua Xu, 2020, J. Am. Medical Informatics Assoc..

Clinical text annotation - what factors are associated with the cost of time?

Hua Xu, A. Franklin, T. Cohen, 2018, AMIA.

Genotype and risk of major bleeding during warfarin treatment.

B. Gage, D. Roden, J. Denny, 2014, Pharmacogenomics.

Incidences and risk factors of serious infections among different rheumatic patients: a retrospective cohort study

Hua Xu, Yang Xiang, Yujia Zhou, 2020 .