Xiujie Chen

发表

The analysis of the drug–targets based on the topological properties in the human protein–protein interaction network

Wei Jiang, Mingzhu Zhu, Lei Gao, 2009, Journal of drug targeting.

CHG: A Systematically Integrated Database of Cancer Hallmark Genes

Xiujie Chen, H. Xie, Denan Zhang, 2020, Frontiers in Genetics.

Identification of Early Warning Signals at the Critical Transition Point of Colorectal Cancer Based on Dynamic Network Analysis

Xiujie Chen, H. Xie, Denan Zhang, 2020, Frontiers in Bioengineering and Biotechnology.

Identification of links between small molecules and miRNAs in human cancers based on transcriptional responses

Mingzhi Liao, Wei Jiang, Wei Li, 2012, Scientific Reports.

Biological evaluation and energetic analyses of novel GSK‐3β inhibitors

Xiujie Chen, H. Xie, Lin Pang, 2018, Journal of cellular biochemistry.

Synthetic Lethality-based Identification of Targets for Anticancer Drugs in the Human Signaling Network

Xiujie Chen, H. Xie, Denan Zhang, 2018, Scientific Reports.

Designing of dual inhibitors for GSK-3β and CDK5: Virtual screening and in vitro biological activities study

Xiujie Chen, H. Xie, Denan Zhang, 2017, Oncotarget.

Network Characteristic Analysis of ADR-related Proteins and Identification of ADR-ADR Associations

Xiujie Chen, Lei Liu, Yunfeng Wang, 2013, Scientific Reports.

Identifying the causative proteins of similar side effect pairs to explore the common molecular basis of these side effects.

Xiujie Chen, Yunfeng Wang, Leiyu Liu, 2015, Molecular bioSystems.

Drug repositioning by applying 'expression profiles' generated by integrating chemical structure similarity and gene semantic similarity.

Xin Wu, Xiujie Chen, Lei Liu, 2014, Molecular bioSystems.

Predicting hepatocellular carcinoma through cross-talk genes identified by risk pathways

Xiujie Chen, H. Xie, Lin Pang, 2018, Oncotarget.

Large-Scale Analysis of Drug Side Effects via Complex Regulatory Modules Composed of microRNAs, Transcription Factors and Gene Sets

Xiujie Chen, Mingliang Gu, Lei Liu, 2017, Scientific Reports.

Concepts and applications of chemical fingerprint for hit and lead screening.

Xiujie Chen, H. Xie, Jingbo Yang, 2022, Drug discovery today.

Identification of Warning Transition Points from Hepatitis B to Hepatocellular Carcinoma Based on Mutation Accumulation for the Early Diagnosis and Potential Drug Treatment of HBV-HCC

Xiujie Chen, Lei Liu, Fei Xu, 2022, Oxidative medicine and cellular longevity.

In silico drug repositioning for the treatment of Alzheimer's disease using molecular docking and gene expression data

Xiujie Chen, H. Xie, Denan Zhang, 2016 .

Prediction on the risk population of idiosyncratic adverse reactions based on molecular docking with mutant proteins

Xiujie Chen, H. Xie, Denan Zhang, 2017, Oncotarget.

Complex integrated analysis of lncRNAs-miRNAs-mRNAs in oral squamous cell carcinoma.

Yang Yu, Xiujie Chen, Dirk Ziebolz, 2017, Oral oncology.

Precision treatment exploration of breast cancer based on heterogeneity analysis of lncRNAs at the single-cell level

Xiujie Chen, Yan Zhang, H. Xie, 2021, BMC cancer.

New insights for precision treatment of glioblastoma from analysis of single-cell lncRNA expression

Xiujie Chen, Yan Zhang, H. Xie, 2021, Journal of Cancer Research and Clinical Oncology.

Computational drug repositioning based on the relationships between substructure-indication

Guoqi Li, Lei Liu, Jingbo Yang, 2020, Briefings Bioinform..

Synthetic Lethality-based Identification of Targets for Anticancer Drugs in the Human Signaling Network

Xiujie Chen, H. Xie, Denan Zhang, 2018, Scientific Reports.

A sensitive method for computing GO-based functional similarities among genes with 'shallow annotation'.

Lei Liu, Xiujie Chen, Jiankai Xu, 2012, Gene.

Synthetic Lethality-based Identification of Targets for Anticancer Drugs in the Human Signaling Network

Xiujie Chen, H. Xie, Denan Zhang, 2018, Scientific Reports.

Exploring Precise Medication Strategies for OSCC Based on Single-Cell Transcriptome Analysis from a Dynamic Perspective

Xiujie Chen, H. Xie, Denan Zhang, 2022, Cancers.

A sub-pathway-based approach for identifying drug response principal network

Xia Li, Xin Wu, Lei Liu, 2011, Bioinform..

Computational drug repositioning for ischemic stroke: neuroprotective drug discovery.

A. Bender, Xiujie Chen, Yan Zhang, 2021, Future medicinal chemistry.

Identification of breast cancer recurrence risk factors based on functional pathways in tumor and normal tissues

Xiujie Chen, H. Xie, Denan Zhang, 2016, Oncotarget.

IGSA: Individual Gene Sets Analysis, including Enrichment and Clustering

Xiujie Chen, H. Xie, Denan Zhang, 2016, PloS one.

Discovering Proangiogenic Drugs in Ischemic Stroke Based on the Relationship between Protein Domain and Drug Substructure.

Xiujie Chen, Yulan Zhu, Kehui Ke, 2018, ACS chemical neuroscience.

Integrating multiple machine learning algorithms for prognostic prediction of gastric cancer based on immune-related lncRNAs

Xiujie Chen, H. Xie, Denan Zhang, 2023, Frontiers in Genetics.

Large-Scale Analysis of Drug Side Effects via Complex Regulatory Modules Composed of microRNAs, Transcription Factors and Gene Sets

Xiujie Chen, Mingliang Gu, Lei Liu, 2017, Scientific Reports.

Computational Prediction of Drug Phenotypic Effects Based on Substructure-Phenotype Associations

Kexin Yu, Xiujie Chen, Denan Zhang, 2022, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Decoding temporal heterogeneity in NSCLC through machine learning and prognostic model construction

Xiujie Chen, Denan Zhang, Lei Liu, 2024, World journal of surgical oncology.

Multi-level characteristics recognition of cancer core therapeutic targets and drug screening for a broader patient population

Xiujie Chen, Denan Zhang, Yangguang Su, 2023, Frontiers in pharmacology.

Crosstalk of different cell-death patterns predicts prognosis and drug sensitivity in glioma

Xiujie Chen, Diwei Huo, Qingkang Meng, 2024, Comput. Biol. Medicine.

BIOINFORMATICS ORIGINAL PAPER

Xia Li, Jiankai Xu, Xiujie Chen, 2022 .