P. Ping

发表

A. Su, J. Yates, K. Watson, 2015, Circulation research.

SetSearch + : Entity-Set-Aware Search and Mining for Scientific Literature

Carl Yang, Yu Zhang, R. Weinshilboum, 2018 .

Mitochondrial PKCepsilon and MAPK form signaling modules in the murine heart: enhanced mitochondrial PKCepsilon-MAPK interactions and differential MAPK activation in PKCepsilon-induced cardioprotection.

P. Ping, R. Bolli, C. Baines, 2002, Circulation research.

Acquisition, Analysis, and Sharing of Data in 2015 and Beyond: A Survey of the Landscape

A. Philippakis, D. DeMets, R. Califf, 2015, Journal of the American Heart Association.

Thematic review series: Systems Biology Approaches to Metabolic and Cardiovascular Disorders. Proteomics approaches to the systems biology of cardiovascular diseases Published, JLR Papers in Press, October 25, 2006.

T. Drake, P. Ping, 2007, Journal of Lipid Research.

The crystal structure of mouse VDAC1 at 2.3 Å resolution reveals mechanistic insights into metabolite gating

Peipei Ping, Duilio Cascio, Ligia Toro, 2008, Proceedings of the National Academy of Sciences.

Integrated omics dissection of proteome dynamics during cardiac remodeling

Brian J. Bleakley, H. Hermjakob, P. Ping, 2018, Nature Communications.

Proteomics Research in Cardiovascular Medicine and Biomarker Discovery.

P. Ping, M. Lam, E. Murphy, 2016, Journal of the American College of Cardiology.

Mapping the Murine Cardiac 26S Proteasome Complexes

P. Ping, E. Stefani, A. Gomes, 2006, Circulation research.

Proteomics-based Development of Biomarkers in Cardiovascular Disease

M. Mayr, P. Ping, Jun Zhang, 2006, Molecular & Cellular Proteomics.

Integration of Cardiac Proteome Biology and Medicine by a Specialized Knowledgebase

Nobel C. Zong, J. Yates, R. Apweiler, 2013, Circulation research.

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)

Richard D. Smith, J. Yates, R. Moritz, 2012, Proteomics.

Construction Algorithm pool Knowledge Bases Temp Result Network Database Full-text Index Storage Data Visualization Network Analysis Engine Query Interpreter User Query User LINECaseOLAP Network Analysis Algorithm pool 1

R. Weinshilboum, Jiawei Han, Xiang Ren, 2017 .

Reactive Oxygen Species Production in Energized Cardiac Mitochondria During Hypoxia/Reoxygenation: Modulation by Nitric Oxide

P. Ping, J. Weiss, P. Korge, 2008, Circulation research.

ProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects.

John R Yates, Tao Xu, Lipi Acharya, 2015, Journal of proteomics.

Heterogeneity of proteome dynamics between connective tissue phases of adult tendon

P. Ping, D. Simpson, A. Pitsillides, 2020, eLife.

Cardiovascular proteomics: tools to develop novel biomarkers and potential applications.

Peipei Ping, Andrew Emili, Thomas Kislinger, 2006, Journal of the American College of Cardiology.

Post-translational modification of cardiac proteasomes: functional delineation enabled by proteomics.

Nobel C. Zong, Sarah B. Scruggs, P. Ping, 2012, American journal of physiology. Heart and circulatory physiology.

Equipping Physiologists with an Informatics Tool Chest: Toward an Integerated Mitochondrial Phenome.

H. Hermjakob, P. Ping, K. Garlid, 2017, Handbook of experimental pharmacology.

Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria

Rolf Apweiler, Peipei Ping, Chenggong Zong, 2008, Proteomics.

Isoflurane Protects the Myocardium Against Ischemic Injury via the Preservation of Mitochondrial Respiration and Its Supramolecular Organization

P. Ping, Caiyun Fang, D. Liem, 2015, Anesthesia and analgesia.

Metabolic Labeling Reveals Proteome Dynamics of Mouse Mitochondria*

Nobel C. Zong, P. Ping, D. Liem, 2012, Molecular & Cellular Proteomics.

Proteomic insights into cardiac cell death and survival

P. Ping, J. Weiss, T. Vondriska, 2008, Proteomics. Clinical applications.

Protein kinase C epsilon signaling complexes include metabolism- and transcription/translation-related proteins: complimentary separation techniques with LC/MS/MS.

D. Allen, P. Ping, T. Vondriska, 2002, Molecular & cellular proteomics : MCP.

Understanding proteasome assembly and regulation: importance to cardiovascular medicine.

P. Ping, Yueju Wang, Glen W. Young, 2008, Trends in cardiovascular medicine.

Contrasting Proteome Biology and Functional Heterogeneity of the 20 S Proteasome Complexes in Mammalian Tissues*S

P. Ping, E. Stefani, Haojie Lu, 2009, Molecular & Cellular Proteomics.

Heterogeneous cardiac proteasomes: mandated by diverse substrates?

Sarah B. Scruggs, P. Ping, Chenggong Zong, 2011, Physiology.

Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine.

Henning Hermjakob, Peipei Ping, Wei Wang, 2018, Circulation research.

Unlocking the Secrets of Mitochondria in the Cardiovascular System: Path to a Cure in Heart Failure—A Report from the 2018 National Heart, Lung, and Blood Institute Workshop

G. Dorn, P. Ping, R. Weiss, 2019, Circulation.

Transgenic Overexpression of Constitutively Active Protein Kinase C ε Causes Concentric Cardiac Hypertrophy

P. Ping, R. Bolli, Y. Takeishi, 2000 .

Transgenic overexpression of constitutively active protein kinase C epsilon causes concentric cardiac hypertrophy.

P. Ping, R. Bolli, Y. Takeishi, 2000, Circulation research.

Guidelines for experimental models of myocardial ischemia and infarction

Steven P Jones, J. Holmes, M. Lindsey, 2018, American journal of physiology. Heart and circulatory physiology.

Protein kinases and kinase-modulated effectors in the late phase of ischemic preconditioning

P. Ping, C. Baines, J. M. Pass, 2001, Basic Research in Cardiology.

PKCε activation induces dichotomous cardiac phenotypes and modulates PKCε-RACK interactions and RACK expression

P. Ping, R. Bolli, Jun Zhang, 2001 .

Early and Late Preconditioning Against Myocardial Stunning: Pathogenesis and Pathophysiology

P. Ping, R. Bolli, Xian-Liang Tang, 1998 .

Omics Discovery Index - Discovering and Linking Public ‘Omics’ Datasets

Christoph Steinbeck, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2016, bioRxiv.

Spatial and temporal dynamics of the cardiac mitochondrial proteome

P. Ping, D. Liem, E. Lau, 2015, Expert review of proteomics.

TAZ encodes tafazzin, a transacylase essential for cardiolipin formation and central to the etiology of Barth syndrome.

P. Ping, A. Garlid, Calvin T Schaffer, 2020, Gene.

Protein tyrosine kinase signaling is necessary for NO donor-induced late preconditioning against myocardial stunning.

P. Ping, T. Vondriska, R. Bolli, 2003, American journal of physiology. Heart and circulatory physiology.

Harnessing the Power of Integrated Mitochondrial Biology and Physiology: A Special Report on the NHLBI Mitochondria in Heart Diseases Initiative.

N. Trayanova, P. Ping, J. Weiss, 2015, Circulation research.

Lysine ubiquitination and acetylation of human cardiac 20S proteasomes

Nobel C. Zong, J. Yates, P. Ping, 2014, Proteomics. Clinical applications.

Molecular- and organelle-based predictive paradigm underlying recovery by left ventricular assist device support.

J. Mulder, E. Lundberg, F. Pontén, 2014, Circulation. Heart failure.

History of Mechanical Circulatory Support Devices

J. Mulder, E. Lundberg, F. Pontén, 2014 .

Cyclophilin D and acetylation: a new link in cardiac signaling.

P. Ping, D. Liem, E. Lau, 2013, Circulation research.

Regulation of Acetylation Restores Proteolytic Function of Diseased Myocardium in Mouse and Human*

Nobel C. Zong, Sarah B. Scruggs, P. Ping, 2013, Molecular & Cellular Proteomics.

A functional annotation of subproteomes in human plasma

Akhilesh Pandey, Min-Seok Kwon, Peipei Ping, 2005, Proteomics.

Uncovering Medical Insights from Vast Amounts of Biomedical Data in Clinical Case Reports

Yizhou Sun, Jiawei Han, Alex A. T. Bui, 2017, bioRxiv.

Phosphorylation of serine 262 in the gap junction protein connexin-43 regulates DNA synthesis in cell-cell contact forming cardiomyocytes

B. Doble, R. Fandrich, E. Kardami, 2003, Journal of Cell Science.

The epsilon subtype of protein kinase C is required for cardiomyocyte connexin-43 phosphorylation.

B. Doble, E. Kardami, P. Ping, 2000, Circulation research.

Abstract 353: Characterization Of Human Plasma Proteome Dynamics Using Deuterium Oxide

Brian J. Bleakley, P. Ping, D. Liem, 2014 .

Beta-adrenergic receptor blockade modulates Bcl-X(S) expression and reduces apoptosis in failing myocardium.

P. Ping, B. Chandrasekar, G. Wang, 2003, Journal of molecular and cellular cardiology.

Nitric oxide (NO) induces nitration of protein kinase Cepsilon (PKCepsilon ), facilitating PKCepsilon translocation via enhanced PKCepsilon -RACK2 interactions: a novel mechanism of no-triggered activation of PKCepsilon.

P. Ping, R. Bolli, Jun Zhang, 2002, The Journal of biological chemistry.

PKCε modulates NF-κB and AP-1 via mitogen-activated protein kinases in adult rabbit cardiomyocytes

Jiahuai Han, Shuang Huang, P. Ping, 2000, American Journal of Physiology-Heart and Circulatory Physiology.

Cardioprotection involves activation of NF-kappa B via PKC-dependent tyrosine and serine phosphorylation of I kappa B-alpha.

P. Ping, T. Vondriska, R. Bolli, 2003, American journal of physiology. Heart and circulatory physiology.

Molecular conformation dictates signaling module formation: example of PKCepsilon and Src tyrosine kinase.

J. Klein, P. Ping, T. Vondriska, 2002, American journal of physiology. Heart and circulatory physiology.

Role of p38 mitogen-activated protein kinases in preconditioning: a detrimental factor or a protective kinase?

P. Ping, E. Murphy, 2000, Circulation research.

Letter by Lotz et al regarding article, "Reactive oxygen species-induced stimulation of 5' AMP-activated protein kinase mediates sevoflurane-induced cardioprotection".

P. Ping, C. Lotz, F. Kehl, 2010, Circulation.

Reduced beta-adrenergic receptor activation decreases G-protein expression and beta-adrenergic receptor kinase activity in porcine heart.

P. Ping, P. Insel, H. Hammond, 1995, The Journal of clinical investigation.

Netrin-1 abrogates ischemia/reperfusion-induced cardiac mitochondrial dysfunction via nitric oxide-dependent attenuation of NOX4 activation and recoupling of NOS.

P. Ping, K. Siu, H. Cai, 2015, Journal of molecular and cellular cardiology.

Cardiac G-protein receptor kinase activity: effect of a beta-adrenergic receptor antagonist.

P. Ping, P. Insel, H. Hammond, 1998, Advances in pharmacology.

A Protein-Centric Perspective of Autophagy and Apoptosis Signaling and Crosstalk in Health and Disease

P. Ping, D. Liem, Jessica M. Lee, 2021, Biochemistry of Apoptosis and Autophagy.

Adenylyl cyclase and G protein receptor kinase expression during development of heart failure.

P. Ping, T. Anzai, M. Gao, 1997, The American journal of physiology.

Altered β‐Adrenergic Receptor Signaling in Heart Failure, In Vivo Gene Transfer Via Adeno and Adeno‐Associated Virus

P. Ping, H. Hammond, Q. Yang, 1996 .

PKCepsilon activation induces dichotomous cardiac phenotypes and modulates PKCepsilon-RACK interactions and RACK expression.

P. Ping, R. Bolli, W. B. Wead, 2001, American journal of physiology. Heart and circulatory physiology.

Enhanced PKC b II translocation and PKC b II-RACK 1 interactions in PKC e-induced heart failure : a role for RACK 1

P. Ping, R. Bolli, C. Baines, 2001 .

Bmx, a member of the Tec family of nonreceptor tyrosine kinases, is a novel participant in pharmacological cardioprotection.

P. Ping, T. Vondriska, R. Bolli, 2004, American journal of physiology. Heart and circulatory physiology.

The nitric oxide hypothesis of late preconditioning

P. Ping, R. Bolli, B. Dawn, 1998, Basic Research in Cardiology.

Cardioprotection involves activation of NF- (cid:1) B via PKC-dependent tyrosine and serine phosphorylation of I (cid:1) B- (cid:2)

P. Ping, T. Vondriska, R. Bolli, 2003 .

Cyclin-dependent kinase 2 signaling regulates myocardial ischemia/reperfusion injury.

P. Ping, D. Liem, P. Kaldis, 2008, Journal of molecular and cellular cardiology.

REVIEW Guidelines in Cardiovascular Research Guidelines for experimental models of myocardial ischemia and infarction

J. Holmes, M. Lindsey, P. Ping, 2018 .

Formation of protein kinase Cε-Lck signaling modules confers cardioprotection

W. Pierce, P. Ping, T. Vondriska, 2002 .

Protein phosphatase 2Cm is a critical regulator of branched-chain amino acid catabolism in mice and cultured cells.

P. Ping, T. Vondriska, Yibin Wang, 2009, The Journal of clinical investigation.

Direct evidence that protein kinase C plays an essential role in the development of late preconditioning against myocardial stunning in conscious rabbits and that epsilon is the isoform involved.

P. Ping, R. Bolli, H. Takano, 1998, The Journal of clinical investigation.

Regional myocardial downregulation of the inhibitory guanosine triphosphate-binding protein (Gi alpha 2) and beta-adrenergic receptors in a porcine model of chronic episodic myocardial ischemia.

P. Ping, H. Hammond, D. Roth, 1993, The Journal of clinical investigation.

Protein phosphatase 2 Cm is a critical regulator of branched-chain amino acid catabolism in mice and cultured cells

P. Ping, T. Vondriska, Yibin Wang, 2009 .

Loss of ABCG1 Results in Chronic Pulmonary Inflammation1

P. Ping, P. Edwards, A. Gomes, 2008, The Journal of Immunology.

PKC-dependent activation of p44/p42 MAPKs during myocardial ischemia-reperfusion in conscious rabbits

P. Ping, R. Bolli, Jun Zhang, 1999 .

Pulmonary Inflammation Loss of ABCG1 Results in Chronic

P. Ping, A. Gomes, Á. Baldán, 2013 .

A new chapter in cardiac PKC signaling studies: searching for isoform-specific molecular targets. Focus on: "isoenzyme-selective regulation of SERCA2 gene expression by protein kinase C in neonatal rat ventricular myocytes".

P. Ping, 2003, American journal of physiology. Cell physiology.

Characterization of alpha-adrenoceptor gene expression in arterial and venous smooth muscle.

P. Ping, J. Faber, 1993, The American journal of physiology.

Functional proteomic analysis of a three-tier PKCepsilon-Akt-eNOS signaling module in cardiac protection.

P. Ping, T. Vondriska, C. Baines, 2005, American journal of physiology. Heart and circulatory physiology.

Protein Kinase C-Epsilon Mediates Phorbol Ester-Induced Phosphorylation of Connexin-43

B. Doble, R. Fandrich, E. Kardami, 2001, Cell communication & adhesion.

An MRM-based workflow for quantifying cardiac mitochondrial protein phosphorylation in murine and human tissue.

Sarah B. Scruggs, P. Ping, K. Faull, 2012, Journal of Proteomics.

Expression of activated PKC epsilon (PKC epsilon) protects the ischemic heart, without attenuating ischemic H(+) production.

P. Ping, R. Bolli, E. Murphy, 2002, Journal of molecular and cellular cardiology.

Characterization, design, and function of the mitochondrial proteome: from organs to organisms.

John R Yates, Rolf Apweiler, Henning Hermjakob, 2014, Journal of proteome research.

PKCepsilon modulates NF-kappaB and AP-1 via mitogen-activated protein kinases in adult rabbit cardiomyocytes.

P. Ping, Shile Huang, R. Bolli, 2000, American journal of physiology. Heart and circulatory physiology.

PKC-dependent activation of p46/p54 JNKs during ischemic preconditioning in conscious rabbits.

P. Ping, R. Bolli, S. Huang, 1999, The American journal of physiology.

Mitochondrial PKC (cid:1) and MAPK Form Signaling Modules in the Murine Heart Enhanced Mitochondrial PKC (cid:1) -MAPK Interactions and Differential MAPK Activation in PKC (cid:1) -Induced Cardioprotection

P. Ping, R. Bolli, C. Baines, 2002 .

New horizons in cardioprotection: recommendations from the 2010 National Heart, Lung, and Blood Institute Workshop.

J. Downey, R. Gibbons, E. Braunwald, 2011, Circulation.

Embryonic Stem Cells Attenuate Viral Myocarditis in Murine Model

P. Ping, G. Wang, Yong-Fu Xiao, 2002, Cell transplantation.

Cardioprotection'' AMP-Activated Protein Kinase Mediates Sevoflurane-Induced ' Stimulation of 5 Induced - Letter by Lotz et al Regarding Article, ''Reactive Oxygen Species

P. Ping, C. Lotz, F. Kehl, 2012 .

Formation of protein kinase C(epsilon)-Lck signaling modules confers cardioprotection.

W. Pierce, P. Ping, T. Vondriska, 2002, The Journal of clinical investigation.

ABCC6 Localizes to the Mitochondria-Associated Membrane

T. Drake, P. Ping, E. Stefani, 2012, Circulation research.

PRKCE gene encoding protein kinase C-epsilon-Dual roles at sarcomeres and mitochondria in cardiomyocytes.

Sarah B. Scruggs, P. Ping, Ding Wang, 2016, Gene.

Convergences of Life Sciences and Engineering in Understanding and Treating Heart Failure.

N. Bursac, G. Vunjak‐Novakovic, W. Pu, 2019, Circulation research.

Brief UltraRapid Communication ABCC6 Localizes to the Mitochondria-Associated Membrane

T. Drake, P. Ping, E. Stefani, 2012 .

A reference set of curated biomedical data and metadata from clinical case reports

Yizhou Sun, Henning Hermjakob, Peipei Ping, 2018, Scientific Data.

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop

Ruben Verborgh, Michel Dumontier, Lucila Ohno-Machado, 2017, J. Biomed. Informatics.

Cardiovascular‐related proteins identified in human plasma by the HUPO Plasma Proteome Project Pilot Phase

Peipei Ping, Chenggong Zong, P. Ping, 2005, Proteomics.

Unsupervised classification of multi-omics data during cardiac remodeling using deep learning.

Wei Wang, Ding Wang, Jie Wang, 2019, Methods.

Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly‐available database

Eugene A. Kapp, S. Hanash, R. Aebersold, 2005, Proteomics.

Bifunctional role of protein tyrosine kinases in late preconditioning against myocardial stunning in conscious rabbits.

P. Ping, R. Bolli, B. Dawn, 1999, Circulation research.

Demonstration of selective protein kinase C-dependent activation of Src and Lck tyrosine kinases during ischemic preconditioning in conscious rabbits.

P. Ping, R. Bolli, B. Dawn, 1999, Circulation research.

Formation of protein kinase Cε-Lck signaling modules confers cardioprotection

W. Pierce, P. Ping, T. Vondriska, 2002 .

PKC-dependent activation of p44/p42 MAPKs during myocardial ischemia-reperfusion in conscious rabbits.

P. Ping, R. Bolli, Jun Zhang, 1999, American journal of physiology. Heart and circulatory physiology.

Mitochondrial Function, Biology, and Role in Disease: A Scientific Statement From the American Heart Association.

G. Dorn, R. Balaban, P. Ping, 2016, Circulation research.

The minimum information about a proteomics experiment (MIAPE)

Lennart Martens, Chris F. Taylor, John R Yates, 2007, Nature Biotechnology.

A Membrane Receptor for Retinol Binding Protein Mediates Cellular Uptake of Vitamin A

P. Ping, D. Bok, R. Kawaguchi, 2007, Science.

New advances in extracting and learning from protein-protein interactions within unstructured biomedical text data.

Peipei Ping, J. Harry Caufield, P. Ping, 2019, Emerging topics in life sciences.

Intracoronary gene transfer of fibroblast growth factor–5 increases blood flow and contractile function in an ischemic region of the heart

Peipei Ping, P. Ping, A. DeMaria, 1996, Nature Medicine.

Mitochondrial Permeability Transition in Cardiac Cell Injury and Death

P. Ping, H. Honda, 2006, Cardiovascular Drugs and Therapy.

Role of the mitochondrial permeability transition in myocardial disease.

Peipei Ping, P. Ping, J. Weiss, 2003, Circulation research.

Machine Learning and Integrative Analysis of Biomedical Big Data

Bilal Mirza, Peipei Ping, Wei Wang, 2019, Genes.

Protein Kinase C&egr; Interacts With and Inhibits the Permeability Transition Pore in Cardiac Mitochondria

P. Ping, R. Bolli, C. Baines, 2003, Circulation research.

Specific Regulation of Noncanonical p38&agr; Activation by Hsp90-Cdc37 Chaperone Complex in Cardiomyocyte

Jiahuai Han, P. Ping, Yibin Wang, 2010, Circulation research.

Characterization of the Cardiac Overexpression of HSPB2 Reveals Mitochondrial and Myogenic Roles Supported by a Cardiac HspB2 Interactome

P. Ping, I. Benjamin, E. Lewandowski, 2015, PloS one.

Quantifying the impact of public omics data

Robert Petryszak, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2018, Nature Communications.

High-Resolution Mapping of Chromatin Conformation in Cardiac Myocytes Reveals Structural Remodeling of the Epigenome in Heart Failure

Matteo Pellegrini, Bing Ren, Peipei Ping, 2017, Circulation.

The ε Subtype of Protein Kinase C Is Required for Cardiomyocyte Connexin-43 Phosphorylation

B. Doble, E. Kardami, P. Ping, 2000 .

PKCε activation augments cardiac mitochondrial respiratory post-anoxic reserve—a putative mechanism in PKCε cardioprotection

P. Ping, M. Sack, M. Essop, 2005 .

Mitochondrial proteome design: From molecular identity to pathophysiological regulation

Hua Cai, Edward Lau, Peipei Ping, 2012, The Journal of general physiology.

Multiprotein signaling complexes and regulation of cardiac phenotype.

P. Ping, T. Vondriska, 2003, Journal of molecular and cellular cardiology.

Specialized compartments of cardiac nuclei exhibit distinct proteomic anatomy*

P. Ping, S. Franklin, T. Vondriska, 2011, Molecular & Cellular Proteomics.

Identification of novel signaling complexes by functional proteomics.

P. Ping, 2003, Circulation research.

New insights into the functional significance of the acidic region of the unique N-terminal extension of cardiac troponin I.

P. Ping, P. D. de Tombe, R. Solaro, 2013, Biochimica et biophysica acta.

The contribution of Alu exons to the human proteome

Lan Lin, P. Ping, M. Lam, 2016, Genome Biology.

PKC-dependent activation of p46/p54 JNKs during ischemic preconditioning in conscious rabbits.

Jiahuai Han, Shuang Huang, P. Ping, 1999, American journal of physiology. Heart and circulatory physiology.

Oxidative stress in atrial fibrillation: an emerging role of NADPH oxidase.

P. Ping, J. Weiss, Jun Zhang, 2013, Journal of molecular and cellular cardiology.

Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles)*

Richard D Smith, Mark Baker, John R Yates, 2011, Molecular & Cellular Proteomics.

Protein Kinase C ε Signaling Complexes Include Metabolism- and Transcription/Translation-related Proteins

D. Allen, P. Ping, T. Vondriska, 2002, Molecular & Cellular Proteomics.

Functional Proteomic Analysis of Protein Kinase C &egr; Signaling Complexes in the Normal Heart and During Cardioprotection

W. Pierce, P. Ping, R. Bolli, 2001, Circulation research.

Cardiovascular Informatics: building a bridge to data harmony.

P. Ping, Ding Wang, J. Caufield, 2021, Cardiovascular research.

Use of functional proteomics to investigate PKCε-mediated cardioprotection: the signaling module hypothesis

J. Klein, P. Ping, T. Vondriska, 2001 .

Ischemic preconditioning induces selective translocation of protein kinase C isoforms epsilon and eta in the heart of conscious rabbits without subcellular redistribution of total protein kinase C activity.

P. Ping, R. Bolli, X. Cao, 1997, Circulation research.

Reactome graph database: Efficient access to complex pathway data

Henning Hermjakob, Lincoln Stein, Guanming Wu, 2018, PLoS Comput. Biol..

Expression of Activated PKC Epsilon (PKC ϵ) Protects the Ischemic Heart, without Attenuating Ischemic H+ Production

Peipei Ping, Elizabeth Murphy, Roberto Bolli, 2002 .

Regulation of cardiac proteasomes by ubiquitination, SUMOylation, and beyond.

Jennifer E. Gilda, Sarah B. Scruggs, P. Ping, 2014, Journal of molecular and cellular cardiology.

Priorities and trends in the study of proteins in eye research, 1924–2014

L. Ferrucci, P. Ping, Pingbo Zhang, 2015, Proteomics. Clinical applications.

A high-stringency blueprint of the human proteome

Rebekah L. Gundry, Joshua L. Justice, R. Aebersold, 2020, Nature Communications.

Divergent Mitochondrial Biogenesis Responses in Human Cardiomyopathy

I. Antoshechkin, P. Ping, D. Liem, 2013, Circulation.

Divergent Mitochondrial Biogenesis Responses in Human Cardiomyopathy Running title :

I. Antoshechkin, P. Ping, D. Liem, 2013 .

BioJS: an open source JavaScript framework for biological data visualization

Maria Jesus Martin, Alexander García Castro, Rafael C. Jimenez, 2013, Bioinform..

Functional proteomics to study protection of the ischaemic myocardium

P. Ping, T. Vondriska, 2002, Expert opinion on therapeutic targets.

HSPA5 Gene encoding Hsp70 chaperone BiP in the endoplasmic reticulum.

P. Ping, D. Liem, Jie Wang, 2017, Gene.

Revealing the Dynamics of the 20 S Proteasome Phosphoproteome

P. Ping, Haojie Lu, Peng-Yuan Yang, 2008, Molecular & Cellular Proteomics.

Cardiovascular proteomics in the era of big data: experimental and computational advances

Edward Lau, Peipei Ping, Maggie P Y Lam, 2016, Clinical Proteomics.

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

J. Nielsen, M. Huss, C. Lindskog, 2015, BMC Genomics.

Functional proteomic analysis of a three-tier PKCε-Akt-eNOS signaling module in cardiac protection

P. Ping, T. Vondriska, C. Baines, 2005 .

Proteome Dynamics and Proteome Function of Cardiac 19S Proteasomes*

Peipei Ping, Chenggong Zong, Caiyun Fang, 2011, Molecular & Cellular Proteomics.

Comparison of Whole Blood and Peripheral Blood Mononuclear Cell Gene Expression for Evaluation of the Perioperative Inflammatory Response in Patients with Advanced Heart Failure

Peipei Ping, Martin Cadeiras, Nicholas Wisniewski, 2014, PloS one.

Exploring proteasome complexes by proteomic approaches

P. Ping, O. Drews, Chenggong Zong, 2007, Proteomics.

Quantitative temporal analysis of protein dynamics in cardiac remodeling.

Peipei Ping, John R. Yates, David A. Liem, 2018, Journal of molecular and cellular cardiology.

Association between preoperative peripheral blood mononuclear cell gene expression profiles, early postoperative organ function recovery potential and long-term survival in advanced heart failure patients undergoing mechanical circulatory support

P. Ping, D. Elashoff, E. Reed, 2017, PloS one.

Past and present course of cardioprotection against ischemia-reperfusion injury.

P. Ping, D. Liem, Jun Zhang, 2007, Journal of applied physiology.

Perspectives in Innate and Acquired Cardioprotection Past and present course of cardioprotection against ischemia-reperfusion injury

P. Ping, D. Liem, Jun Zhang, 2022 .

Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems.

Andrew I Su, Edward Lau, Peipei Ping, 2016, Journal of proteome research.

Reactome diagram viewer: data structures and strategies to boost performance

Lincoln Stein, Henning Hermjakob, Peipei Ping, 2017, Bioinform..

Junctophilin-4, a component of the endoplasmic reticulum–plasma membrane junctions, regulates Ca2+ dynamics in T cells

P. Ping, Y. Gwack, S. Srikanth, 2016, Proceedings of the National Academy of Sciences.

Abstract 20290: Protein Half-Life of Degradation Machineries in Healthy and Stressed Myocardium

Sarah B. Scruggs, P. Ping, M. Lam, 2016 .

The late phase of ischemic preconditioning is abrogated by targeted disruption of the inducible NO synthase gene.

P. Ping, W. Bao, R. Bolli, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Integrated omics dissection of proteome dynamics during cardiac remodeling

Brian J. Bleakley, H. Hermjakob, P. Ping, 2018, Nature Communications.

Hexokinases and cardioprotection.

S. John, P. Ping, J. Weiss, 2015, Journal of molecular and cellular cardiology.

Protein kinetic signatures of the remodeling heart following isoproterenol stimulation.

Edward Lau, Chenguang Liu, Peipei Ping, 2014, The Journal of clinical investigation.

Phosphoproteome Analysis Reveals Regulatory Sites in Major Pathways of Cardiac Mitochondria*

R. Apweiler, P. Ping, J. Weiss, 2010, Molecular & Cellular Proteomics.

Nitric oxide donors protect murine myocardium against infarction via modulation of mitochondrial permeability transition.

P. Ping, J. Weiss, T. Vondriska, 2005, American journal of physiology. Heart and circulatory physiology.

Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles.

Phil Andrews, John R Yates, Rolf Apweiler, 2009, Journal of proteome research.

The Future: Translation from Discovery to the Clinic – Roles of HUPO and Industry in Biomarker Discovery

Gilbert S. Omenn, Peipei Ping, G. Omenn, 2008 .

Mitochondrial protein turnover: methods to measure turnover rates on a large scale.

P. Ping, E. Lau, Amanda J Lin, 2015, Journal of molecular and cellular cardiology.

Advancing cardiovascular biology and medicine via proteomics: Opportunities and present challenges of cardiovascular proteomics.

D. Chan, P. Ping, P. Srinivas, 2010, Circulation.

New Frontiers in Myocardial Protection: A Systems Biology Approach

P. Ping, D. Liem, C. Lotz, 2011, Journal of cardiovascular pharmacology and therapeutics.

S-nitrosylation of TRIM72 mends the broken heart: a molecular modifier-mediated cardioprotection.

P. Ping, Ding Wang, M. Deng, 2014, Journal of molecular and cellular cardiology.

Technology platform development for targeted plasma metabolites in human heart failure

P. Ping, M. Deng, M. Cadeiras, 2013, Clinical Proteomics.

Reductive Stress Causes Pathological Cardiac Remodeling and Diastolic Dysfunction.

Dean P. Jones, P. Ping, S. Franklin, 2020, Antioxidants & redox signaling.

Proteomic and metabolomic analysis of cardioprotection: Interplay between protein kinase C epsilon and delta in regulating glucose metabolism of murine hearts.

Qingbo Xu, M. Mayr, P. Ping, 2009, Journal of molecular and cellular cardiology.

PKC-dependent activation of p44/p42 MAPKs during myocardial ischemia-reperfusion in conscious rabbits.

P. Ping, R. Bolli, X. Cao, 1999, The American journal of physiology.

Cardioprotection involves activation of NF-κB via PKC-dependent tyrosine and serine phosphorylation of IκB-α

P. Ping, T. Vondriska, R. Bolli, 2003 .

Isoform-selective activation of protein kinase C by nitric oxide in the heart of conscious rabbits: a signaling mechanism for both nitric oxide-induced and ischemia-induced preconditioning.

P. Ping, R. Bolli, B. Dawn, 1999, Circulation research.

Discovering and linking public omics data sets using the Omics Discovery Index

Robert Petryszak, Christoph Steinbeck, Yasset Perez-Riverol, 2017, Nature Biotechnology.

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study

Rafael C. Jimenez, Henning Hermjakob, Jose M. Villaveces, 2015, Database J. Biol. Databases Curation.

Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy.

Peipei Ping, Quan Cao, Howard Choi, 2018, Journal of proteome research.

A Comprehensive Typing System for Information Extraction from Clinical Narratives

Yizhou Sun, Peipei Ping, Kai-Wei Chang, 2019 .

Nitric Oxide (NO) Induces Nitration of Protein Kinase Cε (PKCε), Facilitating PKCε Translocation via Enhanced PKCε-RACK2 Interactions

P. Ping, R. Bolli, Jun Zhang, 2002, The Journal of Biological Chemistry.

Protein Kinase C &egr;–Src Modules Direct Signal Transduction in Nitric Oxide–Induced Cardioprotection: Complex Formation as a Means for Cardioprotective Signaling

P. Ping, T. Vondriska, R. Bolli, 2001, Circulation research.

Cardiac toxic effects of trans-2-hexenal are mediated by induction of cardiomyocyte apoptotic pathways

P. Ping, T. Vondriska, C. Baines, 2007, Cardiovascular Toxicology.

Flow-Responsive Vascular Endothelial Growth Factor Receptor-Protein Kinase C Isoform Epsilon Signaling Mediates Glycolytic Metabolites for Vascular Repair.

P. Ping, D. Liem, N. Jen, 2018, Antioxidants & redox signaling.

Regulation of the Protein

B. Doble, R. Fandrich, E. Kardami, 2007 .

Clinical Temporal Relation Extraction with Probabilistic Soft Logic Regularization and Global Inference pdf

Yizhou Sun, Wei Wang, Yichao Zhou, 2020, AAAI.

Reactome enhanced pathway visualization

Lincoln Stein, Henning Hermjakob, Peipei Ping, 2017, Bioinform..

A large dataset of protein dynamics in the mammalian heart proteome

Edward Lau, Peipei Ping, David A Liem, 2016, Scientific Data.

Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease.

Xuan Wang, Jiaming Shen, Peipei Ping, 2018, American journal of physiology. Heart and circulatory physiology.

Site-specific quantitative analysis of cardiac mitochondrial protein phosphorylation.

Sarah B. Scruggs, P. Ping, D. Liem, 2013, Journal of proteomics.

A Second Look at FAIR in Proteomic Investigations.

P. Ping, Ding Wang, J. Caufield, 2021, Journal of proteome research.

Quantitative Temporal Analysis of Protein Dynamics in Maladaptive Cardiac Remodeling

Daniel B. McClatchy, J. Yates, P. Ping, 2018, bioRxiv.

PPM1l encodes an inositol requiring-protein 1 (IRE1) specific phosphatase that regulates the functional outcome of the ER stress response.

Z. Zhou, P. Ping, S. Franklin, 2013, Molecular metabolism.

MIND-S is a deep-learning prediction model for elucidating protein post-translational modifications in human diseases.

P. Ping, Dominic C. M. Ng, Ding Wang, 2023, Cell reports methods.

Substrate- and Isoform-Specific Proteome Stability in Normal and Stressed Cardiac Mitochondria

P. Ping, Jun Zhang, E. Lau, 2012, Circulation research.

Protein degradation by the 26S proteasome system in the normal and stressed myocardium.

P. Ping, A. Gomes, Chenggong Zong, 2006, Antioxidants & redox signaling.

The Murine Cardiac 26S Proteasome: An Organelle Awaiting Exploration

P. Ping, T. Vondriska, A. Gomes, 2005, Annals of the New York Academy of Sciences.

Capillary blood flow and tissue metabolism in skeletal muscle during sympathetic trunk stimulation.

P. Ping, A. Tóth, M. Pál, 1998, American journal of physiology. Heart and circulatory physiology.

Crystal packing analysis of murine VDAC1 crystals in a lipidic environment reveals novel insights on oligomerization and orientation

P. Ping, D. Cascio, R. Ujwal, 2009, Channels.

Altered proteome biology of cardiac mitochondria under stress conditions.

Rolf Apweiler, Peipei Ping, Chenggong Zong, 2008, Journal of proteome research.

Scaffold proteins and assembly of multiprotein signaling complexes.

Peipei Ping, Thomas M Vondriska, P. Ping, 2004, Journal of molecular and cellular cardiology.

Mechanism of enhanced myogenic response in arterioles during sympathetic nerve stimulation.

P. Ping, P. Johnson, 1992, The American journal of physiology.

Differential Regulation of Proteasome Function in Isoproterenol-Induced Cardiac Hypertrophy

P. Ping, D. Liem, Yibin Wang, 2010, Circulation research.

Cloud-Based Phrase Mining and Analysis of User-Defined Phrase-Category Association in Biomedical Publications.

Xuan Wang, Wei Wang, Peipei Ping, 2019, Journal of visualized experiments : JoVE.

Life-iNet: A Structured Network-Based Knowledge Exploration and Analytics System for Life Sciences

Xuan Wang, Jiawei Han, Qi Zhu, 2017, ACL.

A reference set of curated biomedical data and metadata from clinical case reports.

Wei Wang, Yizhou Sun, K. Watson, 2018 .

Mammalian Proteasome Subpopulations with Distinct Molecular Compositions and Proteolytic Activities*

Peipei Ping, Chenggong Zong, Aldrin V. Gomes, 2007, Molecular & Cellular Proteomics.

Regulation of Murine Cardiac 20S Proteasomes: Role of Associating Partners

Peipei Ping, Chenggong Zong, Aldrin V. Gomes, 2006, Circulation research.

EVIDENCEMINER: Textual Evidence Discovery for Life Sciences

Xuan Wang, Qi Li, Weili Liu, 2020, ACL.

Enhanced PKCβII translocation and PKCβII-RACK1 interactions in PKCε-induced heart failure: a role for RACK1

P. Ping, R. Bolli, C. Baines, 2001 .

Increased expression of adenylylcyclase type VI proportionately increases beta-adrenergic receptor-stimulated production of cAMP in neonatal rat cardiac myocytes.

P. Ping, P. Insel, S. Post, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Role of myogenic response in enhancing autoregulation of flow during sympathetic nerve stimulation.

P. Ping, P. Johnson, 1992, The American journal of physiology.

Capillary blood flow and tissue metabolism in skeletal muscle during sympathetic trunk stimulation.

P. Ping, P. Johnson, A. Tóth, 1998, The American journal of physiology.

A novel spectral library workflow to enhance protein identifications.

Huilong Duan, Ning Deng, Peipei Ping, 2013, Journal of proteomics.

Heterogeneity of proteome dynamics between connective tissue phases of adult tendon

P. Ping, D. Simpson, A. Pitsillides, 2020, bioRxiv.

Post-translational Modifications of Integral Membrane Proteins Resolved by Top-down Fourier Transform Mass Spectrometry with Collisionally Activated Dissociation*

J. Bowie, P. Ping, J. Whitelegge, 2010, Molecular & Cellular Proteomics.

Two‐dimensional electrophoresis‐based characterization of post‐translational modifications of mammalian 20S proteasome complexes

P. Ping, Haojie Lu, O. Drews, 2008, Proteomics.

Combining alkaline phosphatase treatment and hybrid linear ion trap/Orbitrap high mass accuracy liquid chromatography-mass spectrometry data for the efficient and confident identification of protein phosphorylation.

Lien-Chin Chen, Hsin-Yi Wu, Peipei Ping, 2009, Analytical chemistry.

Mitochondrial Aldehyde Dehydrogenase 2 Plays Protective Roles in Heart Failure After Myocardial Infarction via Suppression of the Cytosolic JNK/p53 Pathway in Mice

P. Ping, I. Komuro, T. Kawamoto, 2014, Journal of the American Heart Association.

Aztec: A Platform to Render Biomedical Software Findable, Accessible, Interoperable, and Reusable pdf

Wei Wang, Ding Wang, Yichao Zhou, 2017, ArXiv.

Altered beta-adrenergic receptor signaling in heart failure, in vivo gene transfer via adeno and adeno-associated virus.

P. Ping, H. Hammond, Q. Yang, 1996, Microcirculation.

Cardiovascular proteomics in the era of big data: experimental and computational advances

P. Ping, E. Lau, M. Lam, 2016, Clinical Proteomics.

Getting to the heart of proteomics.

Peipei Ping, P. Ping, 2009, The New England journal of medicine.

HUPO 3rd Annual World Congress on Proteomics

G. Omenn, P. Ping, 2005 .

Molecular conformation dictates signaling module formation: example of PKCε and Src tyrosine kinase

J. Klein, P. Ping, T. Vondriska, 2002 .

Adenosine and Clinical€Forms of Neurally-Mediated Syncope

A. Su, P. Ping, Vidya Venkatraman, 2015 .

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles).

Richard D Smith, Mark Baker, John R Yates, 2012, Journal of proteome research.

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)

Richard D Smith, John R Yates, Henning Hermjakob, 2011, Proteomics. Clinical applications.

Understanding the Molecular Interface of Cardiovascular Diseases and COVID-19: A Data Science Approach

Wei Wang, P. Ping, D. Liem, 2022, Advanced Technologies in Cardiovascular Bioengineering.

Letter by Lotz et al Regarding Article, “Reactive Oxygen Species–Induced Stimulation of 5′ AMP-Activated Protein Kinase Mediates Sevoflurane-Induced Cardioprotection”

P. Ping, C. Lotz, F. Kehl, 2010 .

PKCepsilon activation augments cardiac mitochondrial respiratory post-anoxic reserve--a putative mechanism in PKCepsilon cardioprotection.

P. Ping, M. Sack, M. Essop, 2005, Journal of molecular and cellular cardiology.

Revealing the Dynamics of the 20 S Proteasome Phosphoproteome

P. Ping, Haojie Lu, Peng-Yuan Yang, 2008, Molecular & Cellular Proteomics.

Metabolic Labeling Reveals Proteome Dynamics of Mouse Mitochondria*

Nobel C. Zong, P. Ping, D. Liem, 2012, Molecular & Cellular Proteomics.

Guidelines for experimental models of myocardial ischemia and infarction

Steven P Jones, J. Holmes, M. Lindsey, 2018, American journal of physiology. Heart and circulatory physiology.

Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy.

Sarah B. Scruggs, P. Ping, Quan Cao, 2018, Journal of proteome research.

Proteomics Research in Cardiovascular Medicine and Biomarker Discovery.

P. Ping, M. Lam, E. Murphy, 2016, Journal of the American College of Cardiology.

Harnessing the heart of big data.

A. Su, J. Yates, K. Watson, 2015, Circulation research.

Enhanced PKC beta II translocation and PKC beta II-RACK1 interactions in PKC epsilon-induced heart failure: a role for RACK1.

P. Ping, R. Bolli, X. Wu, 2001, American journal of physiology. Heart and circulatory physiology.

Divergent Mitochondrial Biogenesis Responses in Human Cardiomyopathy

P. Ping, D. Liem, K. Margulies, 2013, Circulation.

Divergent Mitochondrial Biogenesis Responses in Human Cardiomyopathy Running Title: Ahuja Et Al.; Mitochondrial Biogenesis in Heart Failure

I. Antoshechkin, P. Ping, D. Liem, 2022 .

Differential Regulation of Proteasome Function in Isoproterenol-Induced Cardiac Hypertrophy

P. Ping, D. Liem, Yibin Wang, 2010, Circulation research.

Delayed Preconditioning Against Myocardial Stunning: Role of Nitric Oxide as Trigger and Mediator

P. Ping, R. Bolli, Jun Zhang, 1998 .

Gene Wiki Reviews-Raising the quality and accessibility of information about the human genome.

Benjamin M. Good, A. Su, P. Ping, 2016, Gene.

Arteriolar network response to pressure reduction during sympathetic nerve stimulation in cat skeletal muscle.

P. Ping, P. Johnson, 1994, The American journal of physiology.

Substrate- and Isoform-Specific Proteome Stability in Normal and Stressed Cardiac Mitochondria

Nobel C. Zong, P. Ping, Jun Zhang, 2012, Circulation research.

A reference set of curated biomedical data and metadata from clinical case reports

Wei Wang, Yizhou Sun, K. Watson, 2018, Scientific Data.

A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts

Wei Wang, Alex A. T. Bui, Peipei Ping, 2018, Journal of visualized experiments : JoVE.

Abstract 16331: Netrin-1 Abrogates Ischemia Reperfusion Induced Cardiac Mitochondrial Dysfunction via Attenuation Of NOX4 And NOS Uncoupling

P. Ping, Jun Zhang, K. Siu, 2011 .

Individualized Knowledge Graph: A Viable Informatics Path to Precision Medicine

Jiawei Han, Peipei Ping, Karol Watson, 2017, Circulation research.

Proteome Dynamics and Proteome Function of Cardiac 19S Proteasomes*

Sarah B. Scruggs, P. Ping, Caiyun Fang, 2011, Molecular & Cellular Proteomics.

Perspectives on: SGP symposium on mitochondrial physiology and medicine: mitochondrial proteome design: from molecular identity to pathophysiological regulation.

Nobel C. Zong, P. Ping, J. Weiss, 2012, The Journal of general physiology.

Discovering and linking public omics data sets using the Omics Discovery Index

Adam J Carroll, A. Nesvizhskii, H. Hermjakob, 2017, Nature Biotechnology.

Abstract 353: Characterization Of Human Plasma Proteome Dynamics Using Deuterium Oxide

Brian J. Bleakley, P. Ping, D. Liem, 2014 .

Heart disease leaves its mark: proteomics-based biosignatures in acute coronary syndromes.

P. Ping, T. Vondriska, W. R. MacLellan, 2004, Journal of the American College of Cardiology.

Proteomic and metabolomic analysis of cardioprotection: Interplay between protein kinase C epsilon and delta in regulating glucose metabolism of murine hearts.

Qingbo Xu, M. Mayr, P. Ping, 2009, Journal of molecular and cellular cardiology.

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop

Alex A. T. Bui, Ravi K. Madduri, Kathleen M. Jagodnik, 2017, J. Biomed. Informatics.

Molecular- and organelle-based predictive paradigm underlying recovery by left ventricular assist device support.

J. Mulder, E. Lundberg, F. Pontén, 2014, Circulation. Heart failure.

HUPO 2011: The New Cardiovascular Initiative ‐ Integrating Proteomics and Cardiovascular Biology in Health and Disease

H. Hermjakob, A. Scholten, P. Ping, 2012, Proteomics.