Mary Yang

发表

Multi-label Deep Learning for Gene Function Annotation in Cancer Pathways

Renchu Guan, Xu Wang, Mary Yang, 2018, Scientific Reports.

A comparative study of different machine learning methods on microarray gene expression data

Jack Y. Yang, Youping Deng, M. Pirooznia, 2008, BMC Genomics.

BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features

Jack Y. Yang, Mary Yang, Liangjiang Wang, 2010, BMC Systems Biology.

Enhancing Joint Protein Structural Prediction by Ensemble Methods

Jack Y. Yang, Mary Yang, 2005 .

Invited talk: Developing deep multi-source intelligent learning that facilitates the advancement of single cell genomics research

Jialing Zhang, Renchu Guan, William Yang, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Selecting subsets of newly extracted features from PCA and PLS in microarray data analysis

Jack Y. Yang, Guozheng Li, Mary Yang, 2008, BMC Genomics.

Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition

Chaoyang Zhang, Youping Deng, Jack Y. Yang, 2008, BMC Genomics.

Transcription Factor and lncRNA Regulatory Networks Identify Key Elements in Lung Adenocarcinoma

Jack Y. Yang, Renchu Guan, Mary Yang, 2018, Genes.

Investigation of transmembrane proteins using a computational approach

Jack Y. Yang, A. Dunker, Youping Deng, 2008, BMC Genomics.

Analyzing adjuvant radiotherapy suggests a non monotonic radio-sensitivity over tumor volumes

Youping Deng, Andrzej Niemierko, Jack Y. Yang, 2008, BMC Genomics.

Ensemble of Probabilistic Neural Networks for Protein Fold Recognition

Yuehui Chen, Xueqin Zhang, Jack Y. Yang, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Improving Prediction Accuracy of Tumor Classification by Re-using the Discarded Genes during Gene Selection

Jack Y. Yang, Guozheng Li, Youping Deng, 2007 .

The up-regulation of Myb may help mediate EGCG inhibition effect on mouse lung adenocarcinoma

Hong Wang, Hong Wang, Mary Yang, 2016, Human Genomics.

Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches

Jack Y. Yang, Mary Yang, Zuojie Luo, 2007, 2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology.

Scientific Review: A new insight on predicting tumour malignancies using synergistic computational intelligence and bioinformatics approaches

Jack Y. Yang, A. Niemierko, Mary Yang, 2009, CI 2009.

Toward the precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis

Yifan Zhang, Renchu Guan, Weida Tong, 2018, BMC Medical Genomics.

Exploring Protein Functional Relationships Using Genomic Information and Data Mining Techniques

Jack Y. Yang, Mary Yang, Okan K. Ersoy, 2003, ICANN.

MicroRNA and messenger RNA profiling reveals new biomarkers and mechanisms for RDX induced neurotoxicity

Mitchell S. Wilbanks, Youping Deng, Mary Yang, 2014, BMC Genomics.

Title MicroRNA and messenger RNA profiling reveals new biomarkersand mechanisms for RDX induced neurotoxicity

Mitchell S. Wilbanks, Youping Deng, Mary Yang, 2014 .

An Integrative Approach Revealing the Landscape of Long Noncoding RNAs in Human Brain

Jun S. Liu, W. Tong, Mary Yang, 2016, 2016 International Conference on Computational Science and Computational Intelligence (CSCI).

Gene regulation mediated by microRNAs in response to green tea polyphenol EGCG in mouse lung cancer

Hong Wang, Youping Deng, Hong Zhou, 2014, BMC Genomics.

Genome-wide detection of a TFIID localization element from an initial human disease mutation

Jens Lichtenberg, Valer Gotea, Lonnie Welch, 2010, Nucleic acids research.

A Systems Biology Comparison of Ovarian Cancers Implicates Putative Somatic Driver Mutations through Protein-Protein Interaction Models

Laura Elnitski, Mary Qu Yang, L. Elnitski, 2016, PloS one.

A Gene Module-Based eQTL Analysis Prioritizing Disease Genes and Pathways in Kidney Cancer

Jun S. Liu, Jun Liu, William Yang, 2017, Computational and structural biotechnology journal.

A hybrid machine learning-based method for classifying the Cushing's Syndrome with comorbid adrenocortical lesions

Xudong Huang, Youping Deng, Jack Y. Yang, 2008, BMC Genomics.

Developing New Variants of the Self-Organizing Feature Map Algorithms

Mary Qu Yang, Jack Y. Yang, Okan K. Ersoy, 2006 .

Identification of Transmembrane Proteins Using Variants of the Self‐Organizing Feature Map Algorithm

Mary Qu Yang, Jack Y. Yang, Jack Y. Yang, 2007 .

Sequential bifurcation Approach to Learning protein Functional Classes

Mary Qu Yang, Jack Y. Yang, Okan K. Ersoy, 2005, Advances in Bioinformatics and Its Applications.

International Conference on Bioinformatics & Computational Biology, BIOCOMP 2007, Volume II, June 25-28, 2007, Las Vegas Nevada, USA

Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang, 2007, BIOCOMP.

Proceedings of the 2007 International Conference on Machine Learning; Models, Technologies & Applications, MLMTA 2007, June 25-28, 2007, Las Vegas Nevada, USA

Hamid R. Arabnia, Mary Qu Yang, Matthias Dehmer, 2007, MLMTA.

International Conference on Bioinformatics & Computational Biology, BIOCOMP 2008, July 14-17, 2008, Las Vegas Nevada, USA, 2 Volumes

Hamid R. Arabnia, Mary Qu Yang, Keith E. Schubert, 2008, BIOCOMP.

Proceedings of the 2007 International Conference on Artificial Intelligence, ICAI 2007, Volume II, June 25-28, 2007, Las Vegas, Nevada, USA

Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang, 2007, IC-AI.

WITHDRAWN: Developing new variants of the self-organizing feature map algorithms with identification of transmembrane proteins

Mary Qu Yang, Jack Y. Yang, Jack Y. Yang, 2006 .

Proceedings of the 2007 International Conference on Genetic and Evolutionary Methods, GEM 2007, June 25-28, 2007, Las Vegas, Nevada, USA

Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang, 2007, GEM.

Developing Intelligent Systems for Distinguishing Benign and Malignant Tumors

Yan Ma, Mary Qu Yang, Jack Y. Yang, 2006 .

Unfolding and refolding of Sol - Gel encapsulated carbonmonoxymyoglobin: An orchestrated spectroscopic study of intermediates and kinetics

Mary Yang, J. Friedman, U. Samuni, 2000 .

An Integrating Analysis Reveals Key Regulatory Networks in Breast Cancer

Jun S. Liu, Mary Yang, William Yang, 2019, 2019 International Conference on Computational Science and Computational Intelligence (CSCI).

Functional Analysis of a Novel cis -Acting Regulatory Region within the Human Ankyrin Gene ( ANK-1 ) Promoter (cid:1)

Mary Yang, D. Bodine, P. Gallagher, 2010 .

Integrating Single-Cell Transcriptome and Network Analysis to Characterize the Therapeutic Response of Chronic Myeloid Leukemia

S. Weissman, Mary Yang, Jialu Ma, 2022, International journal of molecular sciences.

Cross-species mapping of bidirectional promoters enables prediction of unannotated 5' UTRs and identification of species-specific transcripts

Helen Piontkivska, Laura Elnitski, James Reecy, 2009, BMC Genomics.

3D Protein structure prediction with genetic tabu search algorithm

Ting Wang, Jack Y. Yang, Mary Yang, 2009, 2009 Second International Symposium on Knowledge Acquisition and Modeling.

Multi-label Deep Learning for Gene Function Annotation in Cancer Pathways

Renchu Guan, Xu Wang, Mary Yang, 2018, Scientific Reports.

Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology

Paul M. Rindler, Ira W. Deveson, S. Cawley, 2021, Nature Biotechnology.

MISC: missing imputation for single-cell RNA sequencing data

Renchu Guan, William Yang, Mary Yang, 2018, BMC Systems Biology.

Co-expression of long non-coding RNAs and autism risk genes in the developing human brain

Mary Yang, Steven B. Cogill, Anand K. Srivastava, 2018, BMC Systems Biology.

Prediction-based approaches to characterize bidirectional promoters in the mammalian genome

Mary Qu Yang, L. Elnitski, Mary Yang, 2008, BMC Genomics.

Gene Regulation Analysis Reveals Perturbations of Autism Spectrum Disorder during Neural System Development

Joshua Xu, Mary Yang, Dan Li, 2021, Genes.

Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer

Bin Jiang, Mary Yang, Hongming Huang, 2018, BMC Systems Biology.

The upregulation of Myb and Peg3 may mediate EGCG inhibition effect on mouse lung adenocarcinoma

Hong Wang, Hong Zhou, Joseph Manthey, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Liquid biopsy and its role in an advanced clinical trial for lung cancer

Erich A. Peterson, Joshua Xu, Mary Yang, 2018, Experimental biology and medicine.

The emerging genomics and systems biology research lead to systems genomics studies

Jun S. Liu, Jack Y. Yang, A. Niemierko, 2014, BMC Genomics.

Diversity of core promoter elements comprising human bidirectional promoters

Mary Qu Yang, L. Elnitski, Mary Yang, 2008, BMC Genomics.

Identification of genes and pathways involved in kidney renal clear cell carcinoma

Yunlong Liu, Dong Xu, Hamid R. Arabnia, 2014, BMC Bioinformatics.

Characterizing Mutually Exclusive Driver Mutations in Pan-Cancer

Mary Qu Yang, Jun S. Liu, William Yang, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

The clinical significance of snail protein expression in gastric cancer: a meta-analysis

Hamid R. Arabnia, Jun S. Liu, Youping Deng, 2016, Human Genomics.

Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

Paul M. Rindler, David P. Kreil, Paweł P. Łabaj, 2021, Genome biology.

Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms

Yunlong Liu, Dong Xu, Hamid R. Arabnia, 2014, BMC Bioinformatics.

DNAp: A Pipeline for DNA-seq Data Analysis

Y. Guan, Mary Yang, Xiuzhen Huang, 2018, Scientific Reports.

Merging Deep Learning and Data Analytics for Inferring Coronavirus Human Adaptive Transmutability and Transmissibility

John R. Talburt, Jack Y. Yang, Xuesen Wu, 2021, Transactions on Computational Science and Computational Intelligence.

Predicting protein disorder by analyzing amino acid sequence

Jack Y. Yang, Mary Qu Yang, Mary Yang, 2008, BMC Genomics.

Identification of Intrinsically Unstructured Proteins using hierarchical classifier

Jack Y. Yang, Mary Yang, Jack Y. Yang, 2008, Int. J. Data Min. Bioinform..

IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences

Jack Y. Yang, Mary Yang, Jack Y. Yang, 2006, Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06).

Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure

Jack Y. Yang, Mary Yang, Jack Y. Yang, 2006, BIOCOMP.

Differential expression of human telomerase catalytic subunit mRNA by In situ hybridization in pheochromocytomas

Yinfen Qin, Minyi Wei, Jack Y. Yang, 2006, Endocrine pathology.

Functional Analysis of a Novel cis-Acting Regulatory Region within the Human Ankyrin Gene (ANK-1) Promoter

Mary Yang, D. Bodine, P. Gallagher, 2010, Molecular and Cellular Biology.

Comparison of feature selection and classification for MALDI-MS data

Qingzhong Liu, Mary Qu Yang, Mengyu Qiao, 2009, BMC Genomics.

Comprehensive analysis of pulmonary adenocarcinoma in situ (AIS) revealed new insights into lung cancer progression

Yifan Zhang, Renchu Guan, Weida Tong, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

INTERNATIONAL CONFERENCE ON INTELLIGENT SYSTEMS FOR MOLECULAR BIOLOGY (ISMB)

Kai Wang, Elon Portugaly, Miao Zhang, 2009 .

Comprehensive Annotation of Bidirectional Promoters Identifies Co-Regulation among Breast and Ovarian Cancer Genes

Mary Yang, Laura M. Koehly, Laura Elnitski, 2007, PLoS Comput. Biol..

Promoting inter/multidisciplinary education and research in bioinformatics, systems biology and intelligent computing

Yufang Jin, Jack Y. Yang, Mary Yang, 2009, Int. J. Comput. Biol. Drug Des..

Genomics, molecular imaging, bioinformatics, and bio-nano-info integration are synergistic components of translational medicine and personalized healthcare research

Mary Qu Yang, Youping Deng, Hamid R Arabnia, 2008, BMC Genomics.

Visualized analysis of incomplete TCM meridian conductance data

Mary Yang, Zhimin Yang, Guo-Zheng Li, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Comparative analyses of bidirectional promoters in vertebrates

Mary Yang, Laura Elnitski, James Taylor, 2008, BMC Bioinformatics.

Association of six CpG-SNPs in the inflammation-related genes with coronary heart disease

Jack Y. Yang, S. Duan, Youping Deng, 2016, Human Genomics.

Redundant Gene Selection Based on Particle Swarm Optimization

Jack Y. Yang, Mary Yang, Guo-Zheng Li, 2009, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.

Irrelevant gene elimination for Partial Least Squares based Dimension Reduction by using feature probes

Gengfeng Wu, Jack Y. Yang, Mary Yang, 2009, Int. J. Data Min. Bioinform..

Orthogonal projection weights in dimension reduction based on Partial Least Squares

Mary Qu Yang, Jack Y. Yang, Guo-Zheng Li, 2009, CI 2009.

Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor Classification

Jack Y. Yang, Mary Yang, Guo-Zheng Li, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Comparison of machine learning approaches for enhancing Alzheimer’s disease classification

Mary Yang, Qi Li, 2021, PeerJ.

Developing discriminate model and comparative analysis of differentially expressed genes and pathways for bloodstream samples of diabetes mellitus type 2

Xinyu Yang, Yan Li, Chang Liu, 2014, BMC Bioinformatics.

A new statistical approach to combining p-values using gamma distribution and its application to genome-wide association study

Qingzhong Liu, Jing Li, William Yang, 2014, BMC Bioinformatics.

Toward the precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis

Jack Y. Yang, W. Tong, Renchu Guan, 2018, BMC Medical Genomics.

Byzantine fault tolerance for collaborative editing with commutative operations

Xiong Luo, Chaomin Luo, Wenbing Zhao, 2016, 2016 IEEE International Conference on Electro Information Technology (EIT).

Feature space learning model

Maurizio Marchese, Yanchun Liang, Renchu Guan, 2018, J. Ambient Intell. Humaniz. Comput..

Feature selection for semi-supervised multi-label learning with application to gene function analysis

Jack Y. Yang, Mary Yang, Guo-Zheng Li, 2010, BCB '10.

Image Captioning with Bidirectional Semantic Attention-Based Guiding of Long Short-Term Memory

Renchu Guan, Mary Yang, Yanchun Liang, 2019, Neural Processing Letters.

Genomic analyses based on pulmonary adenocarcinoma in situ reveal early lung cancer signature

Jack Y. Yang, Dong Xu, Renchu Guan, 2018, BMC Medical Genomics.

Word-based characterization of promoters involved in human DNA repair pathways

Jens Lichtenberg, Frank Drews, Xiaoyu Liang, 2009, BMC Genomics.

An Enhanced Lipschitz Embedding Classifier for Multi-Emotion Speech Analysis

Jack Y. Yang, Mary Yang, Guo-Zheng Li, 2009, Int. J. Pattern Recognit. Artif. Intell..

Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection

Guo-Zheng Li, Hao-Hua Meng, Youping Deng, 2008, BMC Genomics.

A Knowledge Base Completion Model Based on Path Feature Learning

Yanchun Liang, Xixun Lin, Renchu Guan, 2018, Int. J. Comput. Commun. Control.

Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor Classification

Jack Y. Yang, Mary Yang, Guo-Zheng Li, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Combinatorial Mutagenesis Algorithms, Digital Imaging Spectroscopy, and Solid-Phase Assays for Directed Evolution

Mary Yang, D. Youvan, S. Robles, 2003 .

Supervised learning-based tagSNP selection for genome-wide disease classifications

Qingzhong Liu, Xudong Huang, Andrew H Sung, 2008, BMC Genomics.

Deep oncopanel sequencing reveals fixation time- and within block position-dependent quality degradation in FFPE processed samples

Thomas M. Blomquist, C. Mason, R. Sebra, 2021, bioRxiv.

Abnormal Traffic Detection in VoIP by Using Machine Learning Approaches

Wenqian Yu, Jack Y. Yang, Mary Yang, 2008, IC-AI.

Transforming medicine: functional informatics, drug design, and personalised healthcare

Jack Y. Yang, Mary Yang, Jack Y. Yang, 2008, Int. J. Funct. Informatics Pers. Medicine.

The up-regulation of Myb may help mediate EGCG inhibition effect on mouse lung adenocarcinoma

Hong Wang, Mary Yang, K. Yoshigoe, 2016, Human Genomics.

Systems biology analysis reveals new insights into invasive lung cancer

William Yang, Mary Yang, Jun S. Liu, 2018, BMC Systems Biology.

Feature selection for the imbalanced QSAR problems by using EasyEnsemble

Jack Y. Yang, Mary Yang, Guo-Zheng Li, 2008, Int. J. Comput. Biol. Drug Des..

Improving prediction accuracy of drug activities by utilising unlabelled instances with feature selection

Jack Y. Yang, Mary Yang, Guo-Zheng Li, 2008, Int. J. Comput. Biol. Drug Des..

Asymmetric bagging and feature selection for activities prediction of drug molecules

Jack Y. Yang, Mary Yang, Guo-Zheng Li, 2008, Second International Multi-Symposiums on Computer and Computational Sciences (IMSCCS 2007).

Prediction of DNA-binding residues from protein sequence information using random forests

Liangjiang Wang, Jack Y. Yang, Mary Qu Yang, 2009, BMC Genomics.

Promoting synergistic research and education in genomics and bioinformatics

Youping Deng, Jack Y. Yang, Mary Qu Yang, 2008, BMC Genomics.

A hybrid iterative approach for microarray missing value estimation

Chong He, Wei Zhu, William Yang, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Toward the precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis

Jack Y. Yang, Renchu Guan, Mary Yang, 2018, BMC Medical Genomics.

Word-Based Characterization of the Bidirectional Promoters from the Human DNA-Repair Pathway

Jens Lichtenberg, Lonnie R. Welch, Mary Yang, 2008, BIOCOMP.

High-throughput next-generation sequencing technologies foster new cutting-edge computing techniques in bioinformatics

Qingzhong Liu, Mary Qu Yang, Youping Deng, 2009, BMC Genomics.

Combining support vector regression with feature selection for multivariate calibration

Jack Y. Yang, Mary Yang, Guo-Zheng Li, 2009, Neural Computing and Applications.

DNAp: A Pipeline for DNA-seq Data Analysis

Xiuzhen Huang, Yuanfang Guan, Jason H Moore, 2018, Scientific Reports.

Genomic analyses based on pulmonary adenocarcinoma in situ reveal early lung cancer signature

Jack Y. Yang, Dong Xu, Renchu Guan, 2018, BMC Medical Genomics.

The emerging role of microRNA-4487/6845-3p in Alzheimer’s disease pathologies is induced by Aβ25–35 triggered in SH-SY5Y cell

Jing Cheng, Rong Zhang, William Yang, 2018, BMC Systems Biology.

Relation discovery and hotspots analysis on diabetes mellitus and obesity with representation model

Yan Chen, Yanchun Liang, Renchu Guan, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A hotspots analysis-relation discovery representation model for revealing diabetes mellitus and obesity

Yan Chen, Yanchun Liang, Renchu Guan, 2018, BMC Systems Biology.

Identification and characterization of conserved lncRNAs in human and rat brain

Mary Yang, Dan Li, 2017, BMC Bioinformatics.

Invited Talk: A Computational Study of Bidirectional Promoters in the Human Genome

Mary Yang, Laura Elnitski, L. Elnitski, 2007, ISBRA.

Assessing protein function using a combination of supervised and unsupervised learning

Jack Y. Yang, Mary Yang, Jack Y. Yang, 2006, Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06).

Support Vector Regression with Feature Selection for the Multivariate Calibration of Spectrofluorimetric Determination of Aromatic Amino Acids

Jack Y. Yang, Mary Yang, Guo-Zheng Li, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

New statistical learning theory paradigms adapted to breast cancer diagnosis/classification using image and non-image clinical data

Jack Y. Yang, Mary Yang, Alda Mizaku, 2008, Int. J. Funct. Informatics Pers. Medicine.

Orthology-driven mapping of bidirectional promoters in human and mouse genomes

L. Elnitski, Mary Yang, 2014, BMC Bioinformatics.

Diversity of core promoter elements comprising human bidirectional promoters

L. Elnitski, Mary Yang, 2008, BMC Genomics.

Image Captioning with Bidirectional Semantic Attention-Based Guiding of Long Short-Term Memory

Yanchun Liang, Renchu Guan, Mary Qu Yang, 2019, Neural Processing Letters.

Toward precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis

Renchu Guan, Mary Yang, William Yang, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Feature space learning model

M. Marchese, Renchu Guan, Xu Wang, 2018, Journal of Ambient Intelligence and Humanized Computing.

From Blockchain to Internet-Based Voting

Wenbing Zhao, Hamid R. Arabnia, Qing Wu, 2017, 2017 International Conference on Computational Science and Computational Intelligence (CSCI).