Matthew D. Shirley

PISCES: a package for rapid quantitation and quality control of large scale mRNA-seq datasets

Joshua M. Korn, Matthew D. Shirley, Viveksagar K. Radhakrishna, 2020, bioRxiv.

CRISPR Screens Provide a Comprehensive Assessment of Cancer Vulnerabilities but Generate False-Positive Hits for Highly Amplified Genomic Regions.

Joshua M. Korn, Eric Billy, Tobias Schmelzle, 2016, Cancer discovery.

Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent-of-Origin-based Detection (POD) method

Matthew D. Shirley, Joseph D. Baugher, J. Pevsner, 2013, BMC Genomics.

Inhibition of MDM2 Promotes Antitumor Responses in p53 Wild-Type Cancer Cells through Their Interaction with the Immune and Stromal Microenvironment

Matthew D. Shirley, Hao Wang, P. Hammerman, 2021, Cancer Research.

Unexpected Relationships and Inbreeding in HapMap Phase III Populations

Matthew D. Shirley, Joseph D. Baugher, J. Pevsner, 2012, PloS one.

Sturge-Weber syndrome and port-wine stains caused by somatic mutation in GNAQ.

Matthew D. Shirley, Joseph D. Baugher, B. Cohen, 2013, The New England journal of medicine.