J. Zola

发表

Reverse engineering and analysis of large genome-scale gene networks

M. Aluru, J. Zola, D. Nettleton, 2012, Nucleic acids research.

Large Scale Metagenomic Sequence Clustering via Sketching and Maximal Quasi-clique Enumeration on MapReduce Clusters

J. Zola, S. Aluru, X. Yang, 2012 .

A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana.

M. Aluru, J. Zola, S. Aluru, 2011, The Plant journal : for cell and molecular biology.

Microstructure design using graphs

B. Ganapathysubramanian, J. Zola, O. Wodo, 2018, npj Computational Materials.

Message from the workshop chairs

David A. Bader, J. Zola, S. Aluru, 2010, 2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW).

HiCOMB Introduction

Srinivas Aluru, David A. Bader, Jaroslaw Zola, 2011, 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum.

HiCOMB Introduction and Committees

Srinivas Aluru, David A. Bader, Alba Cristina Magalhaes Alves de Melo, 2014, 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).

GreenABR: energy-aware adaptive bitrate streaming with deep reinforcement learning

Muhammed Fatih Bulut, Daby M. Sow, Bekir O. Turkkan, 2022, MMSys.

GreenABR

Muhammed Fatih Bulut, Bekir O. Turkkan, Changyou Chen, 2022, Proceedings of the 13th ACM Multimedia Systems Conference.

Parallel server for multiple sequence alignment

Jaroslaw Zola, J. Zola, 2005 .

Graph-based Strategy for Establishing Morphology Similarity

Olga Wodo, Varun Chandola, Jaroslaw Zola, 2021, SSDBM.

Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L

Srinivas Aluru, Alexandros Stamatakis, Michael Ott, 2007, Proceedings of the 2007 ACM/IEEE Conference on Supercomputing (SC '07).

ParBaum: Large-Scale Maximum Likelihood-Based Phylogenetic Analyses

Srinivas Aluru, Alexandros Stamatakis, Michael Ott, 2009 .

Large-scale phylogenetic analysis on current HPC architectures

Srinivas Aluru, Alexandros Stamatakis, Michael Ott, 2008, Sci. Program..

Parallel Metagenomic Sequence Clustering Via Sketching and Maximal Quasi-clique Enumeration on Map-Reduce Clouds

Srinivas Aluru, Xiao Yang, Jaroslaw Zola, 2011, 2011 IEEE International Parallel & Distributed Processing Symposium.

GraSPI: Extensible software for the graph-based quantification of morphology in organic electronics

B. Ganapathysubramanian, J. Zola, O. Wodo, 2022, SoftwareX.

Cache-Based Parallelization of Multiple Sequence Alignment Problem

Denis Trystram, Jaroslaw Zola, Gilles Parmentier, 2004, Euro-Par.

Parallel Framework for Dimensionality Reduction of Large-Scale Datasets

Srinivas Aluru, Baskar Ganapathysubramanian, Jaroslaw Zola, 2015, Sci. Program..

An Object Oriented Library for Evolution Programs

Roman Wyrzykowski, Łukasz Łaciński, Jarosław Żola, 2004 .

Chloroplast Photooxidation-Induced Transcriptome Reprogramming in Arabidopsis immutans White Leaf Sectors1[W][OA]

M. Aluru, J. Zola, S. Rodermel, 2009, Plant Physiology.

Exact structure learning of Bayesian networks by optimal path extension

Jaroslaw Zola, Subhadeep Karan, J. Zola, 2016, 2016 IEEE International Conference on Big Data (Big Data).

Federated Computing for the Masses--Aggregating Resources to Tackle Large-Scale Engineering Problems

Yu Xie, Baskar Ganapathysubramanian, Manish Parashar, 2014, Computing in Science & Engineering.

Multiple Sequence Alignment and Phylogenetic Inference

Denis Trystram, Jaroslaw Zola, J. Zola, 2007, Grid Computing for Bioinformatics and Computational Biology.

Automated, high throughput exploration of process–structure–property relationships using the MapReduce paradigm

Olga Wodo, Baskar Ganapathysubramanian, Jaroslaw Zola, 2015 .

Entropy-Isomap: Manifold Learning for High-dimensional Dynamic Processes

Olga Wodo, Varun Chandola, Jaroslaw Zola, 2018, 2018 IEEE International Conference on Big Data (Big Data).

Counting Induced 6-Cycles in Bipartite Graphs

J. Zola, Ahmet Erdem Sarıyüce, A. E. Sarıyüce, 2022, ICPP.

Parallel globally optimal structure learning of Bayesian networks

Srinivas Aluru, Jaroslaw Zola, Olga Nikolova, 2013, J. Parallel Distributed Comput..

Parallel Information-Theory-Based Construction of Genome-Wide Gene Regulatory Networks

Srinivas Aluru, Jaroslaw Zola, Abhinav Sarje, 2010, IEEE Transactions on Parallel and Distributed Systems.

A parallel algorithm for exact Bayesian network inference

Srinivas Aluru, Jaroslaw Zola, Olga Nikolova, 2009, 2009 International Conference on High Performance Computing (HiPC).

Parallel information theory based construction of gene regulatory networks

Srinivas Aluru, Jaroslaw Zola, Maneesha Aluru, 2008, HiPC'08.

Parallel Computing for Gene Networks Reverse Engineering

Jaroslaw Zola, J. Zola, 2014, Approaches in Integrative Bioinformatics.

A Parallel Algorithm for Exact Structure Learning of Bayesian Networks

J. Zola, S. Aluru, Olga Nikolova, 2010 .

A software framework for data dimensionality reduction: application to chemical crystallography

Baskar Ganapathysubramanian, Krishna Rajan, Jaroslaw Zola, 2014, Integrating Materials and Manufacturing Innovation.

Grid Portal for Multiple Sequence Alignment

Jaroslaw Zola, Piotr Dziubecki, J. Zola, 2007 .

Grid portal formultiple sequence alibnment

Jaroslaw Zola, Piotr Dziubecki, J. Zola, 2007 .

Longitudinal K-means approaches to clustering and analyzing EHR opioid use trajectories for clinical subtypes

Peter L. Elkin, Sarah Mullin, Jaroslaw Zola, 2021, J. Biomed. Informatics.

Large scale multiple sequence alignment with simultaneous phylogeny inference

Denis Trystram, Jaroslaw Zola, Gilles Parmentier, 2006, J. Parallel Distributed Comput..

PARALLEL-TCOFFEE: A parallel multiple sequence aligner

Srinivas Aluru, Xiao Yang, Jaroslaw Zola, 2007, PDCS.

Identifying Taxonomic Units in Metagenomic DNA Streams on Mobile Devices

J. Zola, A. E. Sariyuce, Vicky Zheng, 2022, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Identifying Taxonomic Units in Metagenomic DNA Streams

Jaroslaw Zola, Vicky Zheng, Ahmet Erdem Sariyuce, 2020, bioRxiv.

Applications and Challenges of Real-time Mobile DNA Analysis pdf

Steven Y. Ko, Jaroslaw Zola, Lauren M. Sassoubre, 2017, HotMobile.

Jaroslaw Zola, J. Zola, 2014, 2014 IEEE International Parallel & Distributed Processing Symposium Workshops.

Exploring the Use of Elastic Resource Federations for Enabling Large-Scale Scientific Workflows

Baskar Ganapathysubramanian, Ivan Rodero, Javier Diaz-Montes, 2013 .

System Integration

Michael L. Scott, Gerrit Muller Buskerud, H. Bungartz, 2011, Encyclopedia of Parallel Computing.

Scalable Exact Parent Sets Identification in Bayesian Networks Learning with Apache Spark

Jaroslaw Zola, Subhadeep Karan, J. Zola, 2017, 2017 IEEE 24th International Conference on High Performance Computing (HiPC).

Privacy Preserving Analytics on Distributed Medical Data pdf

Marina Blanton, Ah Reum Kang, Jaroslaw Zola, 2018, ArXiv.

Efficient Execution of Dynamic Programming Algorithms on Apache Spark

Robert J. Harrison, Louis-Noël Pouchet, Rezaul Alam Chowdhury, 2020, 2020 IEEE International Conference on Cluster Computing (CLUSTER).

Solving All-Pairs Shortest-Paths Problem in Large Graphs Using Apache Spark

Jaroslaw Zola, Frank Schoeneman, J. Zola, 2019, ICPP.

Parallel server for multiple sequence alignment

J. Zola, 2005 .

Chloroplast Photooxidation-Induced Transcriptome Reprogramming in Arabidopsis immutans White Leaf Sectors1[W][OA]

M. Aluru, J. Zola, S. Rodermel, 2009, Plant Physiology.

Predicting the Impact of Batch Refactoring Code Smells on Application Resource Consumption

Muhammed Fatih Bulut, J. Zola, T. Kosar, 2023, ArXiv.

Accelerating Pairwise Computations on Cell Processors

Srinivas Aluru, Jaroslaw Zola, Abhinav Sarje, 2011, IEEE Transactions on Parallel and Distributed Systems.

Pairwise Computations on the Cell Processor

Srinivas Aluru, Jaroslaw Zola, Abhinav Sarje, 2010, Scientific Computing with Multicore and Accelerators.